Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004527

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004525 and ABIE53_004526 are separated by 105 nucleotidesABIE53_004526 and ABIE53_004527 are separated by 40 nucleotidesABIE53_004527 and ABIE53_004528 are separated by 8 nucleotidesABIE53_004528 and ABIE53_004529 are separated by 123 nucleotides ABIE53_004525: ABIE53_004525 - hypothetical protein, at 715,262 to 715,732 _004525 ABIE53_004526: ABIE53_004526 - uncharacterized protein (DUF1697 family), at 715,838 to 716,347 _004526 ABIE53_004527: ABIE53_004527 - putative metal-binding membrane protein, at 716,388 to 717,215 _004527 ABIE53_004528: ABIE53_004528 - putative dithiol-disulfide oxidoreductase (DUF899 family), at 717,224 to 717,991 _004528 ABIE53_004529: ABIE53_004529 - hypothetical protein, at 718,115 to 719,341 _004529 Position (kb) 716 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 715.439 kb on + strand, within ABIE53_004525at 715.730 kb on + strandat 715.812 kb on + strandat 715.813 kb on - strandat 715.813 kb on - strandat 715.813 kb on - strandat 715.813 kb on - strandat 715.816 kb on - strandat 715.834 kb on + strandat 715.834 kb on + strandat 715.835 kb on - strandat 715.835 kb on - strandat 715.859 kb on + strandat 715.944 kb on + strand, within ABIE53_004526at 715.945 kb on - strand, within ABIE53_004526at 715.945 kb on - strand, within ABIE53_004526at 715.945 kb on - strand, within ABIE53_004526at 716.093 kb on + strand, within ABIE53_004526at 716.094 kb on - strand, within ABIE53_004526at 716.231 kb on - strand, within ABIE53_004526at 716.231 kb on - strand, within ABIE53_004526at 716.232 kb on + strand, within ABIE53_004526at 716.233 kb on - strand, within ABIE53_004526at 716.336 kb on - strandat 716.364 kb on + strandat 716.389 kb on + strandat 716.390 kb on - strandat 716.443 kb on + strandat 716.451 kb on - strandat 716.507 kb on + strand, within ABIE53_004527at 716.508 kb on - strand, within ABIE53_004527at 716.733 kb on + strand, within ABIE53_004527at 716.910 kb on - strand, within ABIE53_004527at 716.910 kb on - strand, within ABIE53_004527at 717.237 kb on + strandat 717.307 kb on - strand, within ABIE53_004528at 717.307 kb on - strand, within ABIE53_004528at 717.339 kb on + strand, within ABIE53_004528at 717.340 kb on - strand, within ABIE53_004528at 717.340 kb on - strand, within ABIE53_004528at 717.348 kb on + strand, within ABIE53_004528at 717.349 kb on - strand, within ABIE53_004528at 717.412 kb on - strand, within ABIE53_004528at 717.501 kb on + strand, within ABIE53_004528at 717.501 kb on + strand, within ABIE53_004528at 717.501 kb on + strand, within ABIE53_004528at 717.501 kb on + strand, within ABIE53_004528at 717.502 kb on - strand, within ABIE53_004528at 717.506 kb on - strand, within ABIE53_004528at 717.506 kb on - strand, within ABIE53_004528at 717.508 kb on - strand, within ABIE53_004528at 717.551 kb on - strand, within ABIE53_004528at 717.619 kb on + strand, within ABIE53_004528at 717.772 kb on - strand, within ABIE53_004528at 717.976 kb on + strandat 717.976 kb on + strandat 717.976 kb on + strandat 717.976 kb on + strandat 717.977 kb on - strandat 717.977 kb on - strandat 718.042 kb on + strandat 718.042 kb on + strandat 718.043 kb on - strandat 718.062 kb on - strandat 718.062 kb on - strandat 718.066 kb on + strandat 718.066 kb on + strandat 718.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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715,439 + ABIE53_004525 0.38 -1.7
715,730 + +0.6
715,812 + -0.5
715,813 - +2.1
715,813 - -1.2
715,813 - -1.4
715,813 - +1.6
715,816 - -1.6
715,834 + -0.4
715,834 + +0.1
715,835 - +1.4
715,835 - +2.0
715,859 + -1.6
715,944 + ABIE53_004526 0.21 -1.2
715,945 - ABIE53_004526 0.21 +0.7
715,945 - ABIE53_004526 0.21 +1.7
715,945 - ABIE53_004526 0.21 -0.0
716,093 + ABIE53_004526 0.50 +2.4
716,094 - ABIE53_004526 0.50 +2.4
716,231 - ABIE53_004526 0.77 -0.6
716,231 - ABIE53_004526 0.77 +2.4
716,232 + ABIE53_004526 0.77 -2.3
716,233 - ABIE53_004526 0.77 +1.4
716,336 - +0.7
716,364 + -1.8
716,389 + -0.6
716,390 - +2.4
716,443 + -2.3
716,451 - -1.3
716,507 + ABIE53_004527 0.14 +0.5
716,508 - ABIE53_004527 0.14 +0.3
716,733 + ABIE53_004527 0.42 -0.7
716,910 - ABIE53_004527 0.63 +0.1
716,910 - ABIE53_004527 0.63 -2.4
717,237 + -0.5
717,307 - ABIE53_004528 0.11 -1.1
717,307 - ABIE53_004528 0.11 -1.7
717,339 + ABIE53_004528 0.15 +2.4
717,340 - ABIE53_004528 0.15 +0.8
717,340 - ABIE53_004528 0.15 -0.8
717,348 + ABIE53_004528 0.16 -0.4
717,349 - ABIE53_004528 0.16 -0.8
717,412 - ABIE53_004528 0.24 -1.1
717,501 + ABIE53_004528 0.36 -0.4
717,501 + ABIE53_004528 0.36 -0.2
717,501 + ABIE53_004528 0.36 +0.8
717,501 + ABIE53_004528 0.36 +0.1
717,502 - ABIE53_004528 0.36 -0.8
717,506 - ABIE53_004528 0.37 -0.6
717,506 - ABIE53_004528 0.37 +0.1
717,508 - ABIE53_004528 0.37 -1.6
717,551 - ABIE53_004528 0.43 +0.5
717,619 + ABIE53_004528 0.51 -0.6
717,772 - ABIE53_004528 0.71 -3.2
717,976 + +2.4
717,976 + -1.5
717,976 + +2.0
717,976 + -1.1
717,977 - +1.2
717,977 - -0.6
718,042 + +0.3
718,042 + +1.1
718,043 - -0.1
718,062 - +1.1
718,062 - +2.4
718,066 + +3.0
718,066 + -2.7
718,067 - -2.1

Or see this region's nucleotide sequence