Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002090

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,341,235	+		ABIE53_002089	0.47	+1.8
2,341,235	+		ABIE53_002089	0.47	-0.9
2,341,235	+		ABIE53_002089	0.47	-0.0
2,341,239	+		ABIE53_002089	0.47	-1.7
2,341,239	+		ABIE53_002089	0.47	-0.1
2,341,239	+		ABIE53_002089	0.47	-0.7
2,341,239	+		ABIE53_002089	0.47	-1.2
2,341,240	-		ABIE53_002089	0.47	-1.2
2,341,240	-		ABIE53_002089	0.47	-0.2
2,341,240	-		ABIE53_002089	0.47	+2.1
2,341,240	-		ABIE53_002089	0.47	-0.9
2,341,240	-		ABIE53_002089	0.47	-1.1
2,341,246	+		ABIE53_002089	0.48	-0.2
2,341,246	+		ABIE53_002089	0.48	-1.9
2,341,246	+		ABIE53_002089	0.48	+0.5
2,341,364	+		ABIE53_002089	0.56	+0.5
2,341,364	+		ABIE53_002089	0.56	-3.4
2,341,365	-		ABIE53_002089	0.56	-2.4
2,341,365	-		ABIE53_002089	0.56	-0.3
2,341,365	-		ABIE53_002089	0.56	+0.7
2,341,365	-		ABIE53_002089	0.56	-0.3
2,341,379	+		ABIE53_002089	0.57	+2.0
2,341,379	+		ABIE53_002089	0.57	-1.5
2,341,379	+		ABIE53_002089	0.57	-0.9
2,341,379	+		ABIE53_002089	0.57	+2.1
2,341,379	+		ABIE53_002089	0.57	+1.1
2,341,379	+		ABIE53_002089	0.57	-1.4
2,341,380	-		ABIE53_002089	0.57	-0.1
2,341,413	+		ABIE53_002089	0.59	-0.6
2,341,413	+		ABIE53_002089	0.59	+0.1
2,341,413	+		ABIE53_002089	0.59	+0.9
2,341,414	-		ABIE53_002089	0.60	+0.1
2,341,414	-		ABIE53_002089	0.60	+0.1
2,341,414	-		ABIE53_002089	0.60	+1.1
2,341,414	-		ABIE53_002089	0.60	-1.9
2,341,414	-		ABIE53_002089	0.60	-0.7
2,341,491	+		ABIE53_002089	0.65	-1.3
2,341,491	+		ABIE53_002089	0.65	+1.1
2,341,491	+		ABIE53_002089	0.65	-0.9
2,341,491	+		ABIE53_002089	0.65	+1.0
2,341,492	-		ABIE53_002089	0.65	+0.5
2,341,492	-		ABIE53_002089	0.65	-2.8
2,341,492	-		ABIE53_002089	0.65	-1.1
2,341,665	+		ABIE53_002089	0.77	-0.3
2,341,665	+		ABIE53_002089	0.77	-1.2
2,341,666	-		ABIE53_002089	0.77	-0.4
2,341,761	+		ABIE53_002089	0.84	-1.6
2,341,761	+		ABIE53_002089	0.84	-0.7
2,341,761	+		ABIE53_002089	0.84	-1.4
2,341,762	-		ABIE53_002089	0.84	-2.2
2,341,762	-		ABIE53_002089	0.84	+2.7
2,341,762	-		ABIE53_002089	0.84	-1.1
2,341,762	-		ABIE53_002089	0.84	-0.5
2,341,762	-		ABIE53_002089	0.84	+0.1
2,341,762	-		ABIE53_002089	0.84	-1.4
2,341,762	-		ABIE53_002089	0.84	-2.7
2,341,762	-		ABIE53_002089	0.84	-0.7
2,341,762	-		ABIE53_002089	0.84	+2.5
2,341,762	-		ABIE53_002089	0.84	-3.2
2,341,762	-		ABIE53_002089	0.84	-0.6
2,341,762	-		ABIE53_002089	0.84	-0.1
2,341,762	-		ABIE53_002089	0.84	-1.1
2,341,762	-		ABIE53_002089	0.84	-2.5
2,341,762	-		ABIE53_002089	0.84	-2.3
2,341,762	-		ABIE53_002089	0.84	-0.4
2,341,762	-		ABIE53_002089	0.84	-2.2
2,341,764	+		ABIE53_002089	0.84	-0.7
2,341,764	+		ABIE53_002089	0.84	-1.4
2,341,764	+		ABIE53_002089	0.84	-1.2
2,341,764	+		ABIE53_002089	0.84	-0.4
2,341,764	+		ABIE53_002089	0.84	+0.0
2,341,764	+		ABIE53_002089	0.84	+0.4
2,341,764	+		ABIE53_002089	0.84	-2.1
2,341,765	-		ABIE53_002089	0.84	+0.1
2,341,765	-		ABIE53_002089	0.84	+3.1
2,341,765	-		ABIE53_002089	0.84	-0.7
2,341,765	-		ABIE53_002089	0.84	+1.1
2,341,765	-		ABIE53_002089	0.84	-0.5
2,341,765	-		ABIE53_002089	0.84	-2.7
2,341,765	-		ABIE53_002089	0.84	+0.7
2,341,765	-		ABIE53_002089	0.84	-0.9
2,341,765	-		ABIE53_002089	0.84	-0.6
2,341,765	-		ABIE53_002089	0.84	-2.3
2,341,765	-		ABIE53_002089	0.84	-0.2
2,341,765	-		ABIE53_002089	0.84	-1.5
2,341,765	-		ABIE53_002089	0.84	-1.4
2,341,765	-		ABIE53_002089	0.84	+0.5
2,341,765	-		ABIE53_002089	0.84	-0.2
2,341,800	+		ABIE53_002089	0.87	-0.7
2,341,800	+		ABIE53_002089	0.87	-1.2
2,341,800	+		ABIE53_002089	0.87	-1.5
2,341,800	+		ABIE53_002089	0.87	+0.0
2,341,800	+		ABIE53_002089	0.87	-1.0
2,341,801	-		ABIE53_002089	0.87	-1.2
2,341,801	-		ABIE53_002089	0.87	+2.1
2,341,801	-		ABIE53_002089	0.87	-2.2
2,341,801	-		ABIE53_002089	0.87	+0.3
2,341,801	-		ABIE53_002089	0.87	-2.3
2,341,801	-		ABIE53_002089	0.87	+2.0
2,341,801	-		ABIE53_002089	0.87	-1.7
2,341,801	-		ABIE53_002089	0.87	-0.6
2,341,801	-		ABIE53_002089	0.87	-3.2
2,341,802	+		ABIE53_002089	0.87	+0.3
2,341,802	+		ABIE53_002089	0.87	-1.2
2,341,802	+		ABIE53_002089	0.87	+1.1
2,341,802	+		ABIE53_002089	0.87	+2.3
2,341,802	+		ABIE53_002089	0.87	-0.8
2,341,803	-		ABIE53_002089	0.87	-2.0
2,341,803	-		ABIE53_002089	0.87	+0.1
2,341,803	-		ABIE53_002089	0.87	-2.2
2,341,803	-		ABIE53_002089	0.87	+0.1
2,341,839	-		ABIE53_002089	0.90	-0.7
2,341,957	+				-1.5
2,341,957	+				-0.7
2,341,958	-				-1.9
2,342,056	+				+1.8
2,342,056	+				+0.1
2,342,056	+				-0.5
2,342,057	-				-0.5
2,342,057	-				+0.5
2,342,057	-				+0.1
2,342,057	-				+0.1
2,342,066	+				+1.0
2,342,066	+				+0.1
2,342,066	+				+0.6
2,342,066	+				+1.1
2,342,066	+				-0.7
2,342,066	+				+1.0
2,342,067	-				-0.2
2,342,076	+				+2.1
2,342,076	+				+0.1
2,342,076	+				+0.1
2,342,076	+				-1.5
2,342,086	+				+1.1
2,342,086	+				+1.0
2,342,086	+				+0.5
2,342,087	-				+4.5
2,342,127	+				+0.1
2,342,127	+				-2.4
2,342,127	+				-0.9
2,342,127	+				+1.5
2,342,127	+				+0.9
2,342,128	-				-1.0
2,342,128	-				-0.2
2,342,128	-				-1.7
2,342,128	-				-4.0
2,342,128	-				+0.1
2,342,128	-				+0.9
2,342,128	-				-1.8
2,342,128	-				-1.1
2,342,128	-				+2.6
2,342,128	-				-0.4
2,342,218	-		ABIE53_002090	0.19	-0.5
2,342,266	+		ABIE53_002090	0.28	-1.1
2,342,266	+		ABIE53_002090	0.28	-0.2
2,342,266	+		ABIE53_002090	0.28	+1.5
2,342,267	-		ABIE53_002090	0.29	-0.1
2,342,267	-		ABIE53_002090	0.29	-0.2
2,342,289	+		ABIE53_002090	0.33	+1.8
2,342,289	+		ABIE53_002090	0.33	+0.5
2,342,289	+		ABIE53_002090	0.33	-1.4
2,342,290	-		ABIE53_002090	0.33	-0.5
2,342,290	-		ABIE53_002090	0.33	-1.9
2,342,290	-		ABIE53_002090	0.33	+0.5
2,342,290	-		ABIE53_002090	0.33	-1.6
2,342,348	+		ABIE53_002090	0.45	-1.1
2,342,348	+		ABIE53_002090	0.45	-0.9
2,342,349	-		ABIE53_002090	0.45	+0.8
2,342,388	-		ABIE53_002090	0.53	+1.9
2,342,388	-		ABIE53_002090	0.53	-2.2
2,342,479	+		ABIE53_002090	0.72	+3.7
2,342,480	-		ABIE53_002090	0.72	+1.5
2,342,500	+		ABIE53_002090	0.77	+0.1
2,342,500	+		ABIE53_002090	0.77	-1.2
2,342,500	+		ABIE53_002090	0.77	-0.1
2,342,501	-		ABIE53_002090	0.77	-0.4
2,342,501	-		ABIE53_002090	0.77	+1.2
2,342,505	+		ABIE53_002090	0.78	+0.7
2,342,505	+		ABIE53_002090	0.78	+3.8
2,342,505	+		ABIE53_002090	0.78	-0.5
2,342,521	+		ABIE53_002090	0.81	-0.4
2,342,522	-		ABIE53_002090	0.81	+0.3
2,342,522	-		ABIE53_002090	0.81	+0.5
2,342,522	-		ABIE53_002090	0.81	+0.5
2,342,533	-		ABIE53_002090	0.83	+4.7
2,342,533	-		ABIE53_002090	0.83	-1.0
2,342,634	+				+0.2
2,342,634	+				+1.0
2,342,634	+				+2.0
2,342,634	+				-1.6
2,342,634	+				-0.6
2,342,634	+				+2.6
2,342,634	+				-3.0
2,342,634	+				-2.8
2,342,634	+				+3.7
2,342,634	+				+2.1
2,342,634	+				-1.8
2,342,634	+				+2.2
2,342,634	+				+1.3
2,342,634	+				+1.1
2,342,634	+				+0.1
2,342,634	+				-2.7
2,342,634	+				+0.8
2,342,634	+				+1.5
2,342,635	-				-2.6
2,342,635	-				-2.5
2,342,635	-				-0.1
2,342,635	-				+0.4
2,342,635	-				-2.3
2,342,635	-				-1.5
2,342,635	-				-0.9
2,342,635	-				-1.2
2,342,635	-				+2.6
2,342,635	-				-1.1
2,342,635	-				+1.1
2,342,639	+				+0.1
2,342,639	+				+1.4
2,342,639	+				-1.1
2,342,639	+				+0.5
2,342,639	+				+0.8
2,342,639	+				-1.7
2,342,639	+				+0.1
2,342,639	+				+0.7
2,342,640	-				-0.7
2,342,640	-				-0.9
2,342,640	-				+3.7
2,342,640	-				-0.8
2,342,640	-				-1.7
2,342,640	-				+1.4
2,342,640	-				-0.4
2,342,640	-				-1.2
2,342,640	-				+0.5
2,342,643	+				+3.7
2,342,643	+				-1.4
2,342,643	+				+0.1
2,342,643	+				-0.3
2,342,643	+				-0.5
2,342,643	+				+0.5
2,342,643	+				+0.5
2,342,643	+				-0.4
2,342,643	+				-0.4
2,342,643	+				+2.4
2,342,643	+				+1.5
2,342,643	+				-1.9
2,342,643	+				+1.7
2,342,644	-				-1.6
2,342,644	-				-1.9
2,342,644	-				-0.9
2,342,644	-				-0.3
2,342,644	-				+1.0
2,342,644	-				-0.2
2,342,644	-				+0.5
2,342,644	-				-2.5
2,342,644	-				-0.2
2,342,644	-				+0.5
2,342,644	-				-2.3
2,342,644	-				-0.5
2,342,644	-				+1.1
2,342,644	-				+1.1
2,342,644	-				+0.5
2,342,644	-				+1.3
2,342,647	+				+2.1
2,342,648	-				+0.5
2,342,648	-				-1.2
2,342,648	-				+0.8
2,342,782	-				-1.9
2,342,782	-				-0.8
2,342,849	+				+2.1
2,342,849	+				+2.8
2,342,849	+				-1.1
2,342,850	-				+0.5
2,342,850	-				-2.4
2,343,011	+		ABIE53_002091	0.17	+0.1
2,343,011	+		ABIE53_002091	0.17	+1.6
2,343,012	-		ABIE53_002091	0.18	-0.7
2,343,012	-		ABIE53_002091	0.18	-0.2
2,343,020	+		ABIE53_002091	0.18	+0.2
2,343,020	+		ABIE53_002091	0.18	+1.1
2,343,020	+		ABIE53_002091	0.18	-0.2
2,343,020	+		ABIE53_002091	0.18	-0.5
2,343,021	-		ABIE53_002091	0.18	-2.7
2,343,021	-		ABIE53_002091	0.18	-1.6
2,343,021	-		ABIE53_002091	0.18	+0.0
2,343,021	-		ABIE53_002091	0.18	-1.1
2,343,021	-		ABIE53_002091	0.18	-1.5
2,343,021	-		ABIE53_002091	0.18	-0.9
2,343,113	+		ABIE53_002091	0.23	-0.2
2,343,197	+		ABIE53_002091	0.27	-1.8
2,343,197	+		ABIE53_002091	0.27	-0.5
2,343,198	-		ABIE53_002091	0.27	-2.1
2,343,198	-		ABIE53_002091	0.27	+2.1
2,343,203	+		ABIE53_002091	0.27	-1.8
2,343,286	+		ABIE53_002091	0.31	-1.4
2,343,323	+		ABIE53_002091	0.33	-2.3
2,343,323	+		ABIE53_002091	0.33	+0.1
2,343,362	+		ABIE53_002091	0.35	-0.4
2,343,363	-		ABIE53_002091	0.35	+1.4