Experiment: RCH2 defined with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_698 and Pf6N2E2_699 overlap by 26 nucleotides Pf6N2E2_699 and Pf6N2E2_700 overlap by 8 nucleotides Pf6N2E2_700 and Pf6N2E2_701 overlap by 4 nucleotides Pf6N2E2_701 and Pf6N2E2_702 are separated by 2 nucleotides
Pf6N2E2_698 - Heme d1 biosynthesis protein NirH, at 805,098 to 805,634
_698
Pf6N2E2_699 - Heme d1 biosynthesis protein NirG, at 805,609 to 806,052
_699
Pf6N2E2_700 - Heme d1 biosynthesis protein NirL, at 806,045 to 806,557
_700
Pf6N2E2_701 - Heme d1 biosynthesis protein NirD / Heme d1 biosynthesis protein NirL, at 806,554 to 807,012
_701
Pf6N2E2_702 - Heme d1 biosynthesis protein NirF, at 807,015 to 808,193
_702
Position (kb) 806
807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 805.623 kb on - strand at 805.637 kb on + strand at 805.637 kb on + strand at 805.637 kb on + strand at 805.637 kb on + strand at 805.637 kb on + strand at 805.637 kb on + strand at 805.637 kb on + strand at 805.637 kb on + strand at 805.638 kb on - strand at 805.638 kb on - strand at 805.638 kb on - strand at 805.638 kb on - strand at 805.638 kb on - strand at 805.638 kb on - strand at 805.638 kb on - strand at 805.638 kb on - strand at 805.638 kb on - strand at 805.638 kb on - strand at 805.769 kb on + strand, within Pf6N2E2_699 at 805.769 kb on + strand, within Pf6N2E2_699 at 805.906 kb on + strand, within Pf6N2E2_699 at 805.906 kb on + strand, within Pf6N2E2_699 at 805.907 kb on - strand, within Pf6N2E2_699 at 806.223 kb on + strand, within Pf6N2E2_700 at 806.223 kb on + strand, within Pf6N2E2_700 at 806.223 kb on + strand, within Pf6N2E2_700 at 806.223 kb on + strand, within Pf6N2E2_700 at 806.223 kb on + strand, within Pf6N2E2_700 at 806.223 kb on + strand, within Pf6N2E2_700 at 806.224 kb on - strand, within Pf6N2E2_700 at 806.257 kb on - strand, within Pf6N2E2_700 at 806.708 kb on + strand, within Pf6N2E2_701 at 806.708 kb on + strand, within Pf6N2E2_701 at 806.709 kb on - strand, within Pf6N2E2_701 at 806.726 kb on + strand, within Pf6N2E2_701 at 806.726 kb on + strand, within Pf6N2E2_701 at 806.727 kb on - strand, within Pf6N2E2_701 at 806.727 kb on - strand, within Pf6N2E2_701 at 806.727 kb on - strand, within Pf6N2E2_701 at 806.727 kb on - strand, within Pf6N2E2_701 at 807.451 kb on + strand, within Pf6N2E2_702 at 807.452 kb on - strand, within Pf6N2E2_702 at 807.568 kb on + strand, within Pf6N2E2_702 at 807.568 kb on + strand, within Pf6N2E2_702 at 807.568 kb on + strand, within Pf6N2E2_702 at 807.568 kb on + strand, within Pf6N2E2_702 at 807.568 kb on + strand, within Pf6N2E2_702 at 807.568 kb on + strand, within Pf6N2E2_702 at 807.568 kb on + strand, within Pf6N2E2_702 at 807.568 kb on + strand, within Pf6N2E2_702 at 807.568 kb on + strand, within Pf6N2E2_702 at 807.568 kb on + strand, within Pf6N2E2_702 at 807.569 kb on - strand, within Pf6N2E2_702 at 807.569 kb on - strand, within Pf6N2E2_702 at 807.569 kb on - strand, within Pf6N2E2_702 at 807.569 kb on - strand, within Pf6N2E2_702 at 807.569 kb on - strand, within Pf6N2E2_702 at 807.572 kb on - strand, within Pf6N2E2_702 at 807.572 kb on - strand, within Pf6N2E2_702 at 807.601 kb on + strand, within Pf6N2E2_702 at 807.601 kb on + strand, within Pf6N2E2_702 at 807.601 kb on + strand, within Pf6N2E2_702 at 807.601 kb on + strand, within Pf6N2E2_702 at 807.601 kb on + strand, within Pf6N2E2_702 at 807.602 kb on - strand, within Pf6N2E2_702 at 807.602 kb on - strand, within Pf6N2E2_702 at 807.814 kb on - strand, within Pf6N2E2_702 at 807.835 kb on + strand, within Pf6N2E2_702 at 807.970 kb on + strand, within Pf6N2E2_702 at 807.970 kb on + strand, within Pf6N2E2_702 at 807.970 kb on + strand, within Pf6N2E2_702 at 807.970 kb on + strand, within Pf6N2E2_702 at 807.970 kb on + strand, within Pf6N2E2_702 at 807.971 kb on - strand, within Pf6N2E2_702 at 807.971 kb on - strand, within Pf6N2E2_702 at 807.971 kb on - strand, within Pf6N2E2_702 at 807.971 kb on - strand, within Pf6N2E2_702
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Thallium(I) acetate 0.002 mg/ml remove 805,623 - -0.9 805,637 + -0.7 805,637 + +0.7 805,637 + -1.5 805,637 + -0.7 805,637 + +1.2 805,637 + -0.2 805,637 + -0.1 805,637 + +0.0 805,638 - -0.5 805,638 - +0.8 805,638 - +0.1 805,638 - -0.9 805,638 - +0.5 805,638 - -0.3 805,638 - +0.9 805,638 - +0.5 805,638 - -0.9 805,638 - +0.1 805,769 + Pf6N2E2_699 0.36 -0.9 805,769 + Pf6N2E2_699 0.36 -0.1 805,906 + Pf6N2E2_699 0.67 +0.5 805,906 + Pf6N2E2_699 0.67 +0.4 805,907 - Pf6N2E2_699 0.67 -0.2 806,223 + Pf6N2E2_700 0.35 -1.1 806,223 + Pf6N2E2_700 0.35 -0.3 806,223 + Pf6N2E2_700 0.35 -1.1 806,223 + Pf6N2E2_700 0.35 +1.2 806,223 + Pf6N2E2_700 0.35 -1.9 806,223 + Pf6N2E2_700 0.35 -2.0 806,224 - Pf6N2E2_700 0.35 +0.2 806,257 - Pf6N2E2_700 0.41 +0.5 806,708 + Pf6N2E2_701 0.34 -0.4 806,708 + Pf6N2E2_701 0.34 +0.6 806,709 - Pf6N2E2_701 0.34 -2.0 806,726 + Pf6N2E2_701 0.37 -0.4 806,726 + Pf6N2E2_701 0.37 -2.1 806,727 - Pf6N2E2_701 0.38 -0.9 806,727 - Pf6N2E2_701 0.38 +1.2 806,727 - Pf6N2E2_701 0.38 -1.5 806,727 - Pf6N2E2_701 0.38 -1.1 807,451 + Pf6N2E2_702 0.37 +2.6 807,452 - Pf6N2E2_702 0.37 -3.0 807,568 + Pf6N2E2_702 0.47 +0.5 807,568 + Pf6N2E2_702 0.47 +0.3 807,568 + Pf6N2E2_702 0.47 +1.0 807,568 + Pf6N2E2_702 0.47 +0.3 807,568 + Pf6N2E2_702 0.47 -1.3 807,568 + Pf6N2E2_702 0.47 +0.5 807,568 + Pf6N2E2_702 0.47 +0.9 807,568 + Pf6N2E2_702 0.47 +0.4 807,568 + Pf6N2E2_702 0.47 +0.2 807,568 + Pf6N2E2_702 0.47 +0.3 807,569 - Pf6N2E2_702 0.47 +0.2 807,569 - Pf6N2E2_702 0.47 -1.7 807,569 - Pf6N2E2_702 0.47 -0.5 807,569 - Pf6N2E2_702 0.47 -0.0 807,569 - Pf6N2E2_702 0.47 -0.4 807,572 - Pf6N2E2_702 0.47 -0.5 807,572 - Pf6N2E2_702 0.47 +2.0 807,601 + Pf6N2E2_702 0.50 +2.5 807,601 + Pf6N2E2_702 0.50 -1.1 807,601 + Pf6N2E2_702 0.50 +0.5 807,601 + Pf6N2E2_702 0.50 +0.2 807,601 + Pf6N2E2_702 0.50 -0.5 807,602 - Pf6N2E2_702 0.50 -0.9 807,602 - Pf6N2E2_702 0.50 -0.0 807,814 - Pf6N2E2_702 0.68 -0.7 807,835 + Pf6N2E2_702 0.70 -0.6 807,970 + Pf6N2E2_702 0.81 +0.3 807,970 + Pf6N2E2_702 0.81 -1.9 807,970 + Pf6N2E2_702 0.81 -0.3 807,970 + Pf6N2E2_702 0.81 -1.0 807,970 + Pf6N2E2_702 0.81 -1.5 807,971 - Pf6N2E2_702 0.81 +0.5 807,971 - Pf6N2E2_702 0.81 +0.5 807,971 - Pf6N2E2_702 0.81 -1.6 807,971 - Pf6N2E2_702 0.81 +0.5
Or see this region's nucleotide sequence