Experiment: RCH2 defined with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4772 and Pf6N2E2_4773 overlap by 29 nucleotides Pf6N2E2_4773 and Pf6N2E2_4774 overlap by 4 nucleotides Pf6N2E2_4774 and Pf6N2E2_4775 are separated by 11 nucleotides
Pf6N2E2_4772 - Coenzyme PQQ synthesis protein E, at 5,513,157 to 5,514,326
_4772
Pf6N2E2_4773 - Coenzyme PQQ synthesis protein D, at 5,514,298 to 5,514,573
_4773
Pf6N2E2_4774 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 5,514,570 to 5,515,322
_4774
Pf6N2E2_4775 - Coenzyme PQQ synthesis protein B, at 5,515,334 to 5,516,245
_4775
Position (kb) 5514
5515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.667 kb on + strand, within Pf6N2E2_4772 at 5513.722 kb on + strand, within Pf6N2E2_4772 at 5513.722 kb on + strand, within Pf6N2E2_4772 at 5514.028 kb on + strand, within Pf6N2E2_4772 at 5514.028 kb on + strand, within Pf6N2E2_4772 at 5514.028 kb on + strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.208 kb on + strand, within Pf6N2E2_4772 at 5514.232 kb on + strand at 5514.233 kb on - strand at 5514.486 kb on - strand, within Pf6N2E2_4773 at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.578 kb on + strand at 5514.578 kb on + strand at 5514.579 kb on - strand at 5514.619 kb on + strand at 5514.641 kb on - strand at 5514.733 kb on + strand, within Pf6N2E2_4774 at 5514.733 kb on + strand, within Pf6N2E2_4774 at 5514.734 kb on - strand, within Pf6N2E2_4774 at 5514.802 kb on + strand, within Pf6N2E2_4774 at 5514.802 kb on + strand, within Pf6N2E2_4774 at 5514.803 kb on - strand, within Pf6N2E2_4774 at 5514.803 kb on - strand, within Pf6N2E2_4774 at 5514.944 kb on - strand, within Pf6N2E2_4774 at 5515.158 kb on - strand, within Pf6N2E2_4774 at 5515.168 kb on + strand, within Pf6N2E2_4774 at 5515.168 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.241 kb on - strand, within Pf6N2E2_4774 at 5515.262 kb on - strand at 5515.262 kb on - strand at 5515.262 kb on - strand at 5515.262 kb on - strand at 5515.262 kb on - strand at 5515.360 kb on - strand at 5515.360 kb on - strand at 5515.439 kb on - strand, within Pf6N2E2_4775 at 5515.445 kb on - strand, within Pf6N2E2_4775 at 5515.445 kb on - strand, within Pf6N2E2_4775
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Thallium(I) acetate 0.002 mg/ml remove 5,513,578 + Pf6N2E2_4772 0.36 -0.3 5,513,578 + Pf6N2E2_4772 0.36 +0.6 5,513,578 + Pf6N2E2_4772 0.36 -1.0 5,513,578 + Pf6N2E2_4772 0.36 -1.0 5,513,578 + Pf6N2E2_4772 0.36 +1.4 5,513,578 + Pf6N2E2_4772 0.36 +0.3 5,513,667 + Pf6N2E2_4772 0.44 -0.7 5,513,722 + Pf6N2E2_4772 0.48 -0.9 5,513,722 + Pf6N2E2_4772 0.48 +0.8 5,514,028 + Pf6N2E2_4772 0.74 -0.6 5,514,028 + Pf6N2E2_4772 0.74 +1.1 5,514,028 + Pf6N2E2_4772 0.74 +0.4 5,514,029 - Pf6N2E2_4772 0.75 +0.3 5,514,029 - Pf6N2E2_4772 0.75 +1.1 5,514,029 - Pf6N2E2_4772 0.75 -1.6 5,514,029 - Pf6N2E2_4772 0.75 +0.5 5,514,029 - Pf6N2E2_4772 0.75 -0.0 5,514,208 + Pf6N2E2_4772 0.90 +1.0 5,514,232 + -1.0 5,514,233 - +0.7 5,514,486 - Pf6N2E2_4773 0.68 -1.6 5,514,573 + +0.5 5,514,573 + +1.2 5,514,573 + +0.5 5,514,573 + +1.2 5,514,573 + +0.4 5,514,574 - +1.5 5,514,574 - -0.9 5,514,574 - +0.5 5,514,574 - +1.2 5,514,574 - +0.1 5,514,578 + +1.4 5,514,578 + -0.2 5,514,579 - +1.1 5,514,619 + +1.2 5,514,641 - -0.7 5,514,733 + Pf6N2E2_4774 0.22 -0.5 5,514,733 + Pf6N2E2_4774 0.22 +1.1 5,514,734 - Pf6N2E2_4774 0.22 -0.5 5,514,802 + Pf6N2E2_4774 0.31 -2.9 5,514,802 + Pf6N2E2_4774 0.31 +0.4 5,514,803 - Pf6N2E2_4774 0.31 -1.8 5,514,803 - Pf6N2E2_4774 0.31 -1.1 5,514,944 - Pf6N2E2_4774 0.50 +1.3 5,515,158 - Pf6N2E2_4774 0.78 +0.3 5,515,168 + Pf6N2E2_4774 0.79 +0.7 5,515,168 + Pf6N2E2_4774 0.79 -0.2 5,515,225 + Pf6N2E2_4774 0.87 -1.8 5,515,225 + Pf6N2E2_4774 0.87 -0.0 5,515,225 + Pf6N2E2_4774 0.87 -0.4 5,515,225 + Pf6N2E2_4774 0.87 +1.3 5,515,225 + Pf6N2E2_4774 0.87 +0.9 5,515,225 + Pf6N2E2_4774 0.87 -0.7 5,515,225 + Pf6N2E2_4774 0.87 -0.1 5,515,225 + Pf6N2E2_4774 0.87 +0.7 5,515,225 + Pf6N2E2_4774 0.87 +1.0 5,515,226 - Pf6N2E2_4774 0.87 +0.6 5,515,226 - Pf6N2E2_4774 0.87 +0.1 5,515,226 - Pf6N2E2_4774 0.87 +1.9 5,515,226 - Pf6N2E2_4774 0.87 +0.6 5,515,226 - Pf6N2E2_4774 0.87 -1.8 5,515,226 - Pf6N2E2_4774 0.87 +0.4 5,515,226 - Pf6N2E2_4774 0.87 +0.1 5,515,226 - Pf6N2E2_4774 0.87 -1.9 5,515,226 - Pf6N2E2_4774 0.87 +0.9 5,515,241 - Pf6N2E2_4774 0.89 -0.6 5,515,262 - -0.1 5,515,262 - -0.6 5,515,262 - +0.2 5,515,262 - +0.3 5,515,262 - -0.9 5,515,360 - -0.2 5,515,360 - -0.4 5,515,439 - Pf6N2E2_4775 0.12 +0.5 5,515,445 - Pf6N2E2_4775 0.12 +0.4 5,515,445 - Pf6N2E2_4775 0.12 +0.4
Or see this region's nucleotide sequence