Experiment: RCH2 defined with copper (II) chloride 0.03 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_659 and Pf6N2E2_660 are separated by 223 nucleotides Pf6N2E2_660 and Pf6N2E2_661 are separated by 168 nucleotides Pf6N2E2_661 and Pf6N2E2_662 are separated by 242 nucleotides Pf6N2E2_662 and Pf6N2E2_663 are separated by 4 nucleotides
Pf6N2E2_659 - Transcriptional regulatory protein ompR, at 763,572 to 764,312
_659
Pf6N2E2_660 - hypothetical protein, at 764,536 to 764,799
_660
Pf6N2E2_661 - DipZ protein, at 764,968 to 766,179
_661
Pf6N2E2_662 - Valyl-tRNA synthetase, at 766,422 to 766,739
_662
Pf6N2E2_663 - Transcriptional activator of acetoin dehydrogenase operon AcoR, at 766,744 to 768,609
_663
Position (kb) 764
765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 764.006 kb on - strand, within Pf6N2E2_659 at 764.006 kb on - strand, within Pf6N2E2_659 at 764.074 kb on - strand, within Pf6N2E2_659 at 764.246 kb on - strand at 764.286 kb on + strand at 764.287 kb on - strand at 764.287 kb on - strand at 764.349 kb on + strand at 764.384 kb on + strand at 764.385 kb on - strand at 764.385 kb on - strand at 764.385 kb on - strand at 764.385 kb on - strand at 764.394 kb on + strand at 764.395 kb on - strand at 764.510 kb on + strand at 764.511 kb on - strand at 764.554 kb on + strand at 764.555 kb on - strand at 764.632 kb on + strand, within Pf6N2E2_660 at 764.632 kb on + strand, within Pf6N2E2_660 at 764.633 kb on - strand, within Pf6N2E2_660 at 764.725 kb on + strand, within Pf6N2E2_660 at 764.726 kb on - strand, within Pf6N2E2_660 at 764.938 kb on + strand at 765.682 kb on + strand, within Pf6N2E2_661 at 765.682 kb on + strand, within Pf6N2E2_661 at 765.682 kb on + strand, within Pf6N2E2_661 at 765.683 kb on - strand, within Pf6N2E2_661 at 765.683 kb on - strand, within Pf6N2E2_661 at 765.683 kb on - strand, within Pf6N2E2_661 at 765.683 kb on - strand, within Pf6N2E2_661 at 765.835 kb on + strand, within Pf6N2E2_661 at 765.835 kb on + strand, within Pf6N2E2_661 at 765.836 kb on - strand, within Pf6N2E2_661 at 765.868 kb on + strand, within Pf6N2E2_661 at 765.869 kb on - strand, within Pf6N2E2_661 at 765.937 kb on + strand, within Pf6N2E2_661 at 765.977 kb on + strand, within Pf6N2E2_661 at 765.998 kb on - strand, within Pf6N2E2_661 at 766.051 kb on + strand, within Pf6N2E2_661 at 766.066 kb on + strand at 766.067 kb on - strand at 766.321 kb on + strand at 766.570 kb on - strand, within Pf6N2E2_662 at 766.653 kb on + strand, within Pf6N2E2_662 at 766.653 kb on + strand, within Pf6N2E2_662 at 766.654 kb on - strand, within Pf6N2E2_662 at 766.654 kb on - strand, within Pf6N2E2_662 at 766.654 kb on - strand, within Pf6N2E2_662 at 766.698 kb on + strand, within Pf6N2E2_662 at 766.698 kb on + strand, within Pf6N2E2_662 at 766.698 kb on + strand, within Pf6N2E2_662 at 766.699 kb on - strand, within Pf6N2E2_662 at 766.701 kb on + strand, within Pf6N2E2_662 at 766.701 kb on + strand, within Pf6N2E2_662 at 766.702 kb on - strand, within Pf6N2E2_662 at 766.702 kb on - strand, within Pf6N2E2_662 at 766.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with copper (II) chloride 0.03 mM remove 764,006 - Pf6N2E2_659 0.59 -0.7 764,006 - Pf6N2E2_659 0.59 -2.5 764,074 - Pf6N2E2_659 0.68 -2.7 764,246 - +0.1 764,286 + +0.6 764,287 - +0.1 764,287 - +0.1 764,349 + +1.3 764,384 + -2.3 764,385 - -0.1 764,385 - -0.4 764,385 - -2.2 764,385 - -0.4 764,394 + -2.7 764,395 - +0.6 764,510 + +0.1 764,511 - +0.8 764,554 + +1.2 764,555 - -2.7 764,632 + Pf6N2E2_660 0.36 -2.2 764,632 + Pf6N2E2_660 0.36 -0.4 764,633 - Pf6N2E2_660 0.37 -1.1 764,725 + Pf6N2E2_660 0.72 +0.0 764,726 - Pf6N2E2_660 0.72 +1.0 764,938 + +0.2 765,682 + Pf6N2E2_661 0.59 +0.8 765,682 + Pf6N2E2_661 0.59 +0.8 765,682 + Pf6N2E2_661 0.59 +1.0 765,683 - Pf6N2E2_661 0.59 +1.3 765,683 - Pf6N2E2_661 0.59 +0.1 765,683 - Pf6N2E2_661 0.59 -0.8 765,683 - Pf6N2E2_661 0.59 -0.5 765,835 + Pf6N2E2_661 0.72 +1.4 765,835 + Pf6N2E2_661 0.72 +1.1 765,836 - Pf6N2E2_661 0.72 -0.7 765,868 + Pf6N2E2_661 0.74 +0.3 765,869 - Pf6N2E2_661 0.74 +0.3 765,937 + Pf6N2E2_661 0.80 -0.3 765,977 + Pf6N2E2_661 0.83 +0.7 765,998 - Pf6N2E2_661 0.85 +0.8 766,051 + Pf6N2E2_661 0.89 +0.4 766,066 + -0.9 766,067 - -2.8 766,321 + -1.4 766,570 - Pf6N2E2_662 0.47 -0.5 766,653 + Pf6N2E2_662 0.73 +0.4 766,653 + Pf6N2E2_662 0.73 -0.9 766,654 - Pf6N2E2_662 0.73 -0.4 766,654 - Pf6N2E2_662 0.73 -1.4 766,654 - Pf6N2E2_662 0.73 -0.4 766,698 + Pf6N2E2_662 0.87 -0.9 766,698 + Pf6N2E2_662 0.87 -0.8 766,698 + Pf6N2E2_662 0.87 +0.3 766,699 - Pf6N2E2_662 0.87 +0.8 766,701 + Pf6N2E2_662 0.88 -0.5 766,701 + Pf6N2E2_662 0.88 -2.5 766,702 - Pf6N2E2_662 0.88 +0.6 766,702 - Pf6N2E2_662 0.88 +0.8 766,738 - +0.2
Or see this region's nucleotide sequence