Experiment: RCH2 defined with copper (II) chloride 0.03 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_483 and Pf6N2E2_484 are separated by 320 nucleotides Pf6N2E2_484 and Pf6N2E2_485 are separated by 196 nucleotides
Pf6N2E2_483 - FIG146518: Zn-dependent hydrolases, including glyoxylases, at 549,289 to 550,152
_483
Pf6N2E2_484 - Aldose 1-epimerase, at 550,473 to 551,342
_484
Pf6N2E2_485 - TRAP-type C4-dicarboxylate transport system, large permease component, at 551,539 to 552,819
_485
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2 at 549.533 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.549 kb on - strand, within Pf6N2E2_483 at 549.549 kb on - strand, within Pf6N2E2_483 at 549.549 kb on - strand, within Pf6N2E2_483 at 549.596 kb on + strand, within Pf6N2E2_483 at 549.597 kb on - strand, within Pf6N2E2_483 at 549.597 kb on - strand, within Pf6N2E2_483 at 549.698 kb on + strand, within Pf6N2E2_483 at 549.911 kb on + strand, within Pf6N2E2_483 at 549.912 kb on - strand at 549.912 kb on - strand, within Pf6N2E2_483 at 550.100 kb on + strand at 550.100 kb on + strand at 550.100 kb on + strand at 550.100 kb on + strand at 550.100 kb on + strand at 550.101 kb on - strand at 550.101 kb on - strand at 550.101 kb on - strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.107 kb on - strand at 550.107 kb on - strand at 550.107 kb on - strand at 550.107 kb on - strand at 550.237 kb on + strand at 550.243 kb on - strand at 550.266 kb on + strand at 550.267 kb on - strand at 550.267 kb on - strand at 550.267 kb on - strand at 550.267 kb on - strand at 550.288 kb on - strand at 550.288 kb on - strand at 550.474 kb on + strand at 550.621 kb on + strand, within Pf6N2E2_484 at 550.622 kb on - strand, within Pf6N2E2_484 at 550.633 kb on + strand, within Pf6N2E2_484 at 550.633 kb on + strand, within Pf6N2E2_484 at 550.634 kb on - strand, within Pf6N2E2_484 at 550.659 kb on + strand, within Pf6N2E2_484 at 550.659 kb on + strand, within Pf6N2E2_484 at 550.659 kb on + strand, within Pf6N2E2_484 at 550.659 kb on + strand, within Pf6N2E2_484 at 550.660 kb on - strand, within Pf6N2E2_484 at 550.660 kb on - strand, within Pf6N2E2_484 at 550.660 kb on - strand, within Pf6N2E2_484 at 550.671 kb on + strand, within Pf6N2E2_484 at 550.671 kb on + strand, within Pf6N2E2_484 at 550.671 kb on + strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.743 kb on + strand, within Pf6N2E2_484 at 550.870 kb on + strand, within Pf6N2E2_484 at 550.871 kb on - strand, within Pf6N2E2_484 at 551.540 kb on + strand at 551.541 kb on - strand at 551.541 kb on - strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.583 kb on - strand at 551.583 kb on - strand at 551.583 kb on - strand at 551.583 kb on - strand at 551.583 kb on - strand at 551.583 kb on - strand at 551.618 kb on + strand at 551.618 kb on + strand at 551.879 kb on + strand, within Pf6N2E2_485 at 551.948 kb on + strand, within Pf6N2E2_485 at 551.948 kb on + strand, within Pf6N2E2_485 at 551.949 kb on - strand, within Pf6N2E2_485 at 551.949 kb on - strand, within Pf6N2E2_485 at 552.006 kb on + strand, within Pf6N2E2_485 at 552.007 kb on - strand, within Pf6N2E2_485 at 552.007 kb on - strand, within Pf6N2E2_485 at 552.007 kb on - strand, within Pf6N2E2_485 at 552.042 kb on - strand, within Pf6N2E2_485 at 552.042 kb on - strand, within Pf6N2E2_485 at 552.050 kb on + strand, within Pf6N2E2_485 at 552.224 kb on + strand, within Pf6N2E2_485 at 552.225 kb on - strand, within Pf6N2E2_485 at 552.225 kb on - strand, within Pf6N2E2_485 at 552.225 kb on - strand, within Pf6N2E2_485 at 552.225 kb on - strand, within Pf6N2E2_485 at 552.225 kb on - strand, within Pf6N2E2_485
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with copper (II) chloride 0.03 mM remove 549,533 + Pf6N2E2_483 0.28 +0.9 549,548 + Pf6N2E2_483 0.30 -0.0 549,548 + Pf6N2E2_483 0.30 -0.3 549,548 + Pf6N2E2_483 0.30 -0.5 549,548 + Pf6N2E2_483 0.30 -0.0 549,549 - Pf6N2E2_483 0.30 -2.4 549,549 - Pf6N2E2_483 0.30 +1.1 549,549 - Pf6N2E2_483 0.30 +0.2 549,596 + Pf6N2E2_483 0.36 -1.6 549,597 - Pf6N2E2_483 0.36 +0.4 549,597 - Pf6N2E2_483 0.36 +0.3 549,698 + Pf6N2E2_483 0.47 -0.5 549,911 + Pf6N2E2_483 0.72 -0.4 549,912 - +0.7 549,912 - Pf6N2E2_483 0.72 +0.1 550,100 + +1.0 550,100 + -2.4 550,100 + +0.3 550,100 + -0.3 550,100 + -1.0 550,101 - -2.0 550,101 - +0.5 550,101 - -0.3 550,106 + -0.7 550,106 + -0.5 550,106 + +0.7 550,106 + -0.4 550,106 + +0.1 550,107 - +1.5 550,107 - -0.9 550,107 - -0.3 550,107 - -1.3 550,237 + -0.1 550,243 - +0.4 550,266 + -0.3 550,267 - +1.0 550,267 - +1.5 550,267 - -0.6 550,267 - +0.9 550,288 - -0.3 550,288 - +0.0 550,474 + +0.5 550,621 + Pf6N2E2_484 0.17 -1.3 550,622 - Pf6N2E2_484 0.17 -1.4 550,633 + Pf6N2E2_484 0.18 -0.0 550,633 + Pf6N2E2_484 0.18 +0.5 550,634 - Pf6N2E2_484 0.19 -0.1 550,659 + Pf6N2E2_484 0.21 -0.7 550,659 + Pf6N2E2_484 0.21 -0.9 550,659 + Pf6N2E2_484 0.21 +0.1 550,659 + Pf6N2E2_484 0.21 -2.2 550,660 - Pf6N2E2_484 0.21 -1.2 550,660 - Pf6N2E2_484 0.21 +0.3 550,660 - Pf6N2E2_484 0.21 -2.4 550,671 + Pf6N2E2_484 0.23 -1.2 550,671 + Pf6N2E2_484 0.23 +0.1 550,671 + Pf6N2E2_484 0.23 +2.2 550,672 - Pf6N2E2_484 0.23 -0.6 550,672 - Pf6N2E2_484 0.23 +0.7 550,672 - Pf6N2E2_484 0.23 -0.1 550,672 - Pf6N2E2_484 0.23 -0.9 550,672 - Pf6N2E2_484 0.23 -0.3 550,672 - Pf6N2E2_484 0.23 -1.9 550,672 - Pf6N2E2_484 0.23 -0.5 550,672 - Pf6N2E2_484 0.23 -0.4 550,743 + Pf6N2E2_484 0.31 +0.0 550,870 + Pf6N2E2_484 0.46 -0.3 550,871 - Pf6N2E2_484 0.46 +0.7 551,540 + +1.9 551,541 - -0.6 551,541 - -0.9 551,582 + -1.4 551,582 + -1.6 551,582 + +1.1 551,582 + -0.3 551,582 + +0.7 551,582 + -1.0 551,582 + -1.5 551,583 - +0.1 551,583 - -1.0 551,583 - -0.5 551,583 - -0.9 551,583 - -0.9 551,583 - +0.6 551,618 + -0.9 551,618 + +0.7 551,879 + Pf6N2E2_485 0.27 +0.5 551,948 + Pf6N2E2_485 0.32 -0.3 551,948 + Pf6N2E2_485 0.32 -0.3 551,949 - Pf6N2E2_485 0.32 +1.3 551,949 - Pf6N2E2_485 0.32 +1.6 552,006 + Pf6N2E2_485 0.36 +2.3 552,007 - Pf6N2E2_485 0.37 +0.5 552,007 - Pf6N2E2_485 0.37 +0.1 552,007 - Pf6N2E2_485 0.37 -0.7 552,042 - Pf6N2E2_485 0.39 -1.3 552,042 - Pf6N2E2_485 0.39 +0.9 552,050 + Pf6N2E2_485 0.40 +0.7 552,224 + Pf6N2E2_485 0.53 +0.7 552,225 - Pf6N2E2_485 0.54 -0.8 552,225 - Pf6N2E2_485 0.54 +0.7 552,225 - Pf6N2E2_485 0.54 -0.7 552,225 - Pf6N2E2_485 0.54 +0.7 552,225 - Pf6N2E2_485 0.54 -0.3
Or see this region's nucleotide sequence