Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_191

Experiment: RCH2 defined with copper (II) chloride 0.03 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_190 and Pf6N2E2_191 are separated by 3 nucleotidesPf6N2E2_191 and Pf6N2E2_192 are separated by 217 nucleotides Pf6N2E2_190 - Aliphatic amidase AmiE (EC 3.5.1.4), at 242,368 to 243,411 _190 Pf6N2E2_191 - ClpB protein, at 243,415 to 244,458 _191 Pf6N2E2_192 - hypothetical protein, at 244,676 to 246,115 _192 Position (kb) 243 244 245Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 242.425 kb on + strandat 242.445 kb on + strandat 242.445 kb on + strandat 242.445 kb on + strandat 242.445 kb on + strandat 242.446 kb on - strandat 242.545 kb on + strand, within Pf6N2E2_190at 242.566 kb on + strand, within Pf6N2E2_190at 242.566 kb on + strand, within Pf6N2E2_190at 242.567 kb on - strand, within Pf6N2E2_190at 242.567 kb on - strand, within Pf6N2E2_190at 242.601 kb on + strand, within Pf6N2E2_190at 242.713 kb on + strand, within Pf6N2E2_190at 242.714 kb on - strand, within Pf6N2E2_190at 242.789 kb on + strand, within Pf6N2E2_190at 242.790 kb on - strand, within Pf6N2E2_190at 242.790 kb on - strand, within Pf6N2E2_190at 242.790 kb on - strand, within Pf6N2E2_190at 242.818 kb on + strand, within Pf6N2E2_190at 242.819 kb on - strand, within Pf6N2E2_190at 242.819 kb on - strand, within Pf6N2E2_190at 242.879 kb on - strand, within Pf6N2E2_190at 242.941 kb on + strand, within Pf6N2E2_190at 242.941 kb on + strand, within Pf6N2E2_190at 242.941 kb on + strand, within Pf6N2E2_190at 242.941 kb on + strand, within Pf6N2E2_190at 242.941 kb on + strand, within Pf6N2E2_190at 242.942 kb on - strand, within Pf6N2E2_190at 242.942 kb on - strand, within Pf6N2E2_190at 242.942 kb on - strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.943 kb on + strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 242.944 kb on - strand, within Pf6N2E2_190at 243.007 kb on + strand, within Pf6N2E2_190at 243.046 kb on + strand, within Pf6N2E2_190at 243.046 kb on + strand, within Pf6N2E2_190at 243.130 kb on + strand, within Pf6N2E2_190at 243.130 kb on + strand, within Pf6N2E2_190at 243.130 kb on + strand, within Pf6N2E2_190at 243.130 kb on + strand, within Pf6N2E2_190at 243.229 kb on + strand, within Pf6N2E2_190at 243.229 kb on + strand, within Pf6N2E2_190at 243.229 kb on + strand, within Pf6N2E2_190at 243.229 kb on + strand, within Pf6N2E2_190at 243.230 kb on - strand, within Pf6N2E2_190at 243.340 kb on - strandat 243.410 kb on - strandat 243.593 kb on + strand, within Pf6N2E2_191at 243.593 kb on + strand, within Pf6N2E2_191at 243.593 kb on + strand, within Pf6N2E2_191at 243.594 kb on - strand, within Pf6N2E2_191at 243.686 kb on + strand, within Pf6N2E2_191at 243.687 kb on - strand, within Pf6N2E2_191at 243.687 kb on - strand, within Pf6N2E2_191at 243.707 kb on + strand, within Pf6N2E2_191at 243.707 kb on + strand, within Pf6N2E2_191at 243.707 kb on + strand, within Pf6N2E2_191at 243.708 kb on - strand, within Pf6N2E2_191at 243.799 kb on + strand, within Pf6N2E2_191at 243.799 kb on + strand, within Pf6N2E2_191at 243.810 kb on + strand, within Pf6N2E2_191at 243.856 kb on + strand, within Pf6N2E2_191at 243.856 kb on + strand, within Pf6N2E2_191at 243.857 kb on - strand, within Pf6N2E2_191at 243.857 kb on - strand, within Pf6N2E2_191at 243.857 kb on - strand, within Pf6N2E2_191at 244.040 kb on - strand, within Pf6N2E2_191at 244.104 kb on + strand, within Pf6N2E2_191at 244.104 kb on + strand, within Pf6N2E2_191at 244.105 kb on - strand, within Pf6N2E2_191at 244.457 kb on - strandat 244.590 kb on + strandat 244.591 kb on - strandat 244.591 kb on - strandat 244.591 kb on - strandat 244.591 kb on - strandat 244.596 kb on + strandat 244.596 kb on + strandat 244.596 kb on + strandat 244.643 kb on + strandat 244.648 kb on + strandat 244.648 kb on + strandat 244.648 kb on + strandat 244.648 kb on + strandat 244.649 kb on - strandat 244.649 kb on - strandat 244.797 kb on + strandat 244.878 kb on + strand, within Pf6N2E2_192at 244.878 kb on + strand, within Pf6N2E2_192at 244.878 kb on + strand, within Pf6N2E2_192at 244.879 kb on - strand, within Pf6N2E2_192at 244.879 kb on - strand, within Pf6N2E2_192at 244.879 kb on - strand, within Pf6N2E2_192at 244.879 kb on - strand, within Pf6N2E2_192at 244.879 kb on - strand, within Pf6N2E2_192at 244.947 kb on + strand, within Pf6N2E2_192at 244.947 kb on + strand, within Pf6N2E2_192at 244.947 kb on + strand, within Pf6N2E2_192at 244.988 kb on + strand, within Pf6N2E2_192at 244.989 kb on - strand, within Pf6N2E2_192at 244.989 kb on - strand, within Pf6N2E2_192at 244.992 kb on + strand, within Pf6N2E2_192at 244.992 kb on + strand, within Pf6N2E2_192at 244.993 kb on - strand, within Pf6N2E2_192at 244.998 kb on + strand, within Pf6N2E2_192at 244.998 kb on + strand, within Pf6N2E2_192at 244.998 kb on + strand, within Pf6N2E2_192at 244.998 kb on + strand, within Pf6N2E2_192at 244.998 kb on + strand, within Pf6N2E2_192at 244.999 kb on - strand, within Pf6N2E2_192at 244.999 kb on - strand, within Pf6N2E2_192at 244.999 kb on - strand, within Pf6N2E2_192at 244.999 kb on - strand, within Pf6N2E2_192at 244.999 kb on - strand, within Pf6N2E2_192at 245.024 kb on + strand, within Pf6N2E2_192at 245.061 kb on + strand, within Pf6N2E2_192at 245.061 kb on + strand, within Pf6N2E2_192at 245.149 kb on + strand, within Pf6N2E2_192at 245.150 kb on - strand, within Pf6N2E2_192at 245.151 kb on + strand, within Pf6N2E2_192at 245.151 kb on + strand, within Pf6N2E2_192at 245.152 kb on - strand, within Pf6N2E2_192at 245.301 kb on + strand, within Pf6N2E2_192at 245.397 kb on + strand, within Pf6N2E2_192at 245.397 kb on + strand, within Pf6N2E2_192at 245.398 kb on - strand, within Pf6N2E2_192

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with copper (II) chloride 0.03 mM
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242,425 + +0.8
242,445 + -0.8
242,445 + -0.8
242,445 + +0.7
242,445 + +0.6
242,446 - -0.2
242,545 + Pf6N2E2_190 0.17 +0.6
242,566 + Pf6N2E2_190 0.19 -1.1
242,566 + Pf6N2E2_190 0.19 -0.4
242,567 - Pf6N2E2_190 0.19 -1.1
242,567 - Pf6N2E2_190 0.19 +0.8
242,601 + Pf6N2E2_190 0.22 -0.4
242,713 + Pf6N2E2_190 0.33 +0.8
242,714 - Pf6N2E2_190 0.33 +0.1
242,789 + Pf6N2E2_190 0.40 -2.1
242,790 - Pf6N2E2_190 0.40 -0.8
242,790 - Pf6N2E2_190 0.40 +1.2
242,790 - Pf6N2E2_190 0.40 -2.5
242,818 + Pf6N2E2_190 0.43 -0.2
242,819 - Pf6N2E2_190 0.43 -1.2
242,819 - Pf6N2E2_190 0.43 +1.6
242,879 - Pf6N2E2_190 0.49 +0.2
242,941 + Pf6N2E2_190 0.55 +0.5
242,941 + Pf6N2E2_190 0.55 -0.6
242,941 + Pf6N2E2_190 0.55 +1.6
242,941 + Pf6N2E2_190 0.55 -1.2
242,941 + Pf6N2E2_190 0.55 -1.6
242,942 - Pf6N2E2_190 0.55 -0.2
242,942 - Pf6N2E2_190 0.55 -0.2
242,942 - Pf6N2E2_190 0.55 -0.3
242,943 + Pf6N2E2_190 0.55 -2.2
242,943 + Pf6N2E2_190 0.55 -0.5
242,943 + Pf6N2E2_190 0.55 +1.2
242,943 + Pf6N2E2_190 0.55 +0.4
242,943 + Pf6N2E2_190 0.55 -0.8
242,943 + Pf6N2E2_190 0.55 +0.6
242,943 + Pf6N2E2_190 0.55 -0.8
242,943 + Pf6N2E2_190 0.55 +2.1
242,943 + Pf6N2E2_190 0.55 +0.9
242,943 + Pf6N2E2_190 0.55 -0.4
242,943 + Pf6N2E2_190 0.55 +0.2
242,943 + Pf6N2E2_190 0.55 +0.2
242,943 + Pf6N2E2_190 0.55 +0.8
242,943 + Pf6N2E2_190 0.55 +0.6
242,944 - Pf6N2E2_190 0.55 +3.6
242,944 - Pf6N2E2_190 0.55 -0.9
242,944 - Pf6N2E2_190 0.55 +1.2
242,944 - Pf6N2E2_190 0.55 +0.2
242,944 - Pf6N2E2_190 0.55 -1.3
242,944 - Pf6N2E2_190 0.55 -0.8
242,944 - Pf6N2E2_190 0.55 -2.3
242,944 - Pf6N2E2_190 0.55 +0.8
242,944 - Pf6N2E2_190 0.55 +0.8
242,944 - Pf6N2E2_190 0.55 +0.7
242,944 - Pf6N2E2_190 0.55 -1.8
242,944 - Pf6N2E2_190 0.55 -0.2
242,944 - Pf6N2E2_190 0.55 -0.7
243,007 + Pf6N2E2_190 0.61 +0.7
243,046 + Pf6N2E2_190 0.65 -1.3
243,046 + Pf6N2E2_190 0.65 -0.2
243,130 + Pf6N2E2_190 0.73 -0.1
243,130 + Pf6N2E2_190 0.73 -1.8
243,130 + Pf6N2E2_190 0.73 +1.2
243,130 + Pf6N2E2_190 0.73 -3.0
243,229 + Pf6N2E2_190 0.82 -1.8
243,229 + Pf6N2E2_190 0.82 -0.1
243,229 + Pf6N2E2_190 0.82 -0.8
243,229 + Pf6N2E2_190 0.82 +1.6
243,230 - Pf6N2E2_190 0.83 -0.5
243,340 - +0.8
243,410 - +0.2
243,593 + Pf6N2E2_191 0.17 +0.8
243,593 + Pf6N2E2_191 0.17 +1.1
243,593 + Pf6N2E2_191 0.17 +2.0
243,594 - Pf6N2E2_191 0.17 -0.8
243,686 + Pf6N2E2_191 0.26 +1.7
243,687 - Pf6N2E2_191 0.26 +2.8
243,687 - Pf6N2E2_191 0.26 -0.9
243,707 + Pf6N2E2_191 0.28 +0.2
243,707 + Pf6N2E2_191 0.28 -0.6
243,707 + Pf6N2E2_191 0.28 +0.8
243,708 - Pf6N2E2_191 0.28 +0.0
243,799 + Pf6N2E2_191 0.37 +0.2
243,799 + Pf6N2E2_191 0.37 +0.2
243,810 + Pf6N2E2_191 0.38 +1.4
243,856 + Pf6N2E2_191 0.42 +1.5
243,856 + Pf6N2E2_191 0.42 +0.4
243,857 - Pf6N2E2_191 0.42 +0.2
243,857 - Pf6N2E2_191 0.42 -0.8
243,857 - Pf6N2E2_191 0.42 -0.8
244,040 - Pf6N2E2_191 0.60 +1.0
244,104 + Pf6N2E2_191 0.66 -0.2
244,104 + Pf6N2E2_191 0.66 -1.5
244,105 - Pf6N2E2_191 0.66 +0.8
244,457 - -1.8
244,590 + +1.2
244,591 - -0.8
244,591 - +0.7
244,591 - -0.2
244,591 - -0.9
244,596 + -0.2
244,596 + -0.9
244,596 + -0.2
244,643 + +0.8
244,648 + +1.3
244,648 + -0.3
244,648 + -0.4
244,648 + -1.5
244,649 - -1.3
244,649 - +1.9
244,797 + -0.2
244,878 + Pf6N2E2_192 0.14 +0.1
244,878 + Pf6N2E2_192 0.14 +0.6
244,878 + Pf6N2E2_192 0.14 -0.6
244,879 - Pf6N2E2_192 0.14 +0.1
244,879 - Pf6N2E2_192 0.14 +0.8
244,879 - Pf6N2E2_192 0.14 -0.3
244,879 - Pf6N2E2_192 0.14 -0.2
244,879 - Pf6N2E2_192 0.14 -0.8
244,947 + Pf6N2E2_192 0.19 -1.2
244,947 + Pf6N2E2_192 0.19 +0.8
244,947 + Pf6N2E2_192 0.19 -0.2
244,988 + Pf6N2E2_192 0.22 -1.5
244,989 - Pf6N2E2_192 0.22 -0.2
244,989 - Pf6N2E2_192 0.22 +1.2
244,992 + Pf6N2E2_192 0.22 +0.8
244,992 + Pf6N2E2_192 0.22 +0.7
244,993 - Pf6N2E2_192 0.22 -0.9
244,998 + Pf6N2E2_192 0.22 -2.0
244,998 + Pf6N2E2_192 0.22 +0.8
244,998 + Pf6N2E2_192 0.22 +0.6
244,998 + Pf6N2E2_192 0.22 +1.5
244,998 + Pf6N2E2_192 0.22 +0.5
244,999 - Pf6N2E2_192 0.22 +0.6
244,999 - Pf6N2E2_192 0.22 -0.6
244,999 - Pf6N2E2_192 0.22 +0.5
244,999 - Pf6N2E2_192 0.22 -0.2
244,999 - Pf6N2E2_192 0.22 +0.0
245,024 + Pf6N2E2_192 0.24 -0.1
245,061 + Pf6N2E2_192 0.27 +1.3
245,061 + Pf6N2E2_192 0.27 -1.2
245,149 + Pf6N2E2_192 0.33 -0.8
245,150 - Pf6N2E2_192 0.33 +0.8
245,151 + Pf6N2E2_192 0.33 +2.3
245,151 + Pf6N2E2_192 0.33 -1.5
245,152 - Pf6N2E2_192 0.33 +1.4
245,301 + Pf6N2E2_192 0.43 +1.6
245,397 + Pf6N2E2_192 0.50 -0.5
245,397 + Pf6N2E2_192 0.50 -3.3
245,398 - Pf6N2E2_192 0.50 -2.0

Or see this region's nucleotide sequence