Experiment: Sebacic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS11755 and BPHYT_RS11760 are separated by 37 nucleotides BPHYT_RS11760 and BPHYT_RS11765 are separated by 26 nucleotides BPHYT_RS11765 and BPHYT_RS11770 are separated by 63 nucleotides
BPHYT_RS11755: BPHYT_RS11755 - spermidine/putrescine ABC transporter substrate-binding protein, at 2,666,142 to 2,667,197
_RS11755
BPHYT_RS11760: BPHYT_RS11760 - polyamine ABC transporter substrate-binding protein, at 2,667,235 to 2,668,488
_RS11760
BPHYT_RS11765: BPHYT_RS11765 - polyamine ABC transporter permease, at 2,668,515 to 2,669,327
_RS11765
BPHYT_RS11770: BPHYT_RS11770 - hypothetical protein, at 2,669,391 to 2,669,822
_RS11770
Position (kb)
2667
2668
2669 Strain fitness (log2 ratio)
-1
0
1
2 at 2666.283 kb on + strand, within BPHYT_RS11755 at 2666.841 kb on + strand, within BPHYT_RS11755 at 2667.944 kb on + strand, within BPHYT_RS11760 at 2667.998 kb on - strand, within BPHYT_RS11760 at 2668.127 kb on - strand, within BPHYT_RS11760 at 2668.174 kb on + strand, within BPHYT_RS11760 at 2668.301 kb on - strand, within BPHYT_RS11760 at 2668.412 kb on - strand at 2668.578 kb on - strand at 2668.578 kb on - strand at 2669.083 kb on + strand, within BPHYT_RS11765
Per-strain Table
Position Strand Gene LocusTag Fraction Sebacic (C) remove 2,666,283 + BPHYT_RS11755 0.13 +2.3 2,666,841 + BPHYT_RS11755 0.66 +0.1 2,667,944 + BPHYT_RS11760 0.57 -0.8 2,667,998 - BPHYT_RS11760 0.61 -0.7 2,668,127 - BPHYT_RS11760 0.71 -0.5 2,668,174 + BPHYT_RS11760 0.75 -1.2 2,668,301 - BPHYT_RS11760 0.85 +0.1 2,668,412 - -0.5 2,668,578 - +2.0 2,668,578 - -0.1 2,669,083 + BPHYT_RS11765 0.70 +0.0
Or see this region's nucleotide sequence