Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11760

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11755 and BPHYT_RS11760 are separated by 37 nucleotidesBPHYT_RS11760 and BPHYT_RS11765 are separated by 26 nucleotidesBPHYT_RS11765 and BPHYT_RS11770 are separated by 63 nucleotides BPHYT_RS11755: BPHYT_RS11755 - spermidine/putrescine ABC transporter substrate-binding protein, at 2,666,142 to 2,667,197 _RS11755 BPHYT_RS11760: BPHYT_RS11760 - polyamine ABC transporter substrate-binding protein, at 2,667,235 to 2,668,488 _RS11760 BPHYT_RS11765: BPHYT_RS11765 - polyamine ABC transporter permease, at 2,668,515 to 2,669,327 _RS11765 BPHYT_RS11770: BPHYT_RS11770 - hypothetical protein, at 2,669,391 to 2,669,822 _RS11770 Position (kb) 2667 2668 2669Strain fitness (log2 ratio) -1 0 1 2at 2666.283 kb on + strand, within BPHYT_RS11755at 2666.841 kb on + strand, within BPHYT_RS11755at 2667.944 kb on + strand, within BPHYT_RS11760at 2667.998 kb on - strand, within BPHYT_RS11760at 2668.127 kb on - strand, within BPHYT_RS11760at 2668.174 kb on + strand, within BPHYT_RS11760at 2668.301 kb on - strand, within BPHYT_RS11760at 2668.412 kb on - strandat 2668.578 kb on - strandat 2668.578 kb on - strandat 2669.083 kb on + strand, within BPHYT_RS11765

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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2,666,283 + BPHYT_RS11755 0.13 +2.3
2,666,841 + BPHYT_RS11755 0.66 +0.1
2,667,944 + BPHYT_RS11760 0.57 -0.8
2,667,998 - BPHYT_RS11760 0.61 -0.7
2,668,127 - BPHYT_RS11760 0.71 -0.5
2,668,174 + BPHYT_RS11760 0.75 -1.2
2,668,301 - BPHYT_RS11760 0.85 +0.1
2,668,412 - -0.5
2,668,578 - +2.0
2,668,578 - -0.1
2,669,083 + BPHYT_RS11765 0.70 +0.0

Or see this region's nucleotide sequence