Experiment: Sebacic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07525 and BPHYT_RS07530 overlap by 94 nucleotides BPHYT_RS07530 and BPHYT_RS07535 are separated by 47 nucleotides BPHYT_RS07535 and BPHYT_RS07540 are separated by 100 nucleotides BPHYT_RS07540 and BPHYT_RS07545 are separated by 192 nucleotides
BPHYT_RS07525: BPHYT_RS07525 - ArsR family transcriptional regulator, at 1,712,876 to 1,713,301
_RS07525
BPHYT_RS07530: BPHYT_RS07530 - ATPase, at 1,713,208 to 1,713,636
_RS07530
BPHYT_RS07535: BPHYT_RS07535 - hypothetical protein, at 1,713,684 to 1,714,421
_RS07535
BPHYT_RS07540: BPHYT_RS07540 - hypothetical protein, at 1,714,522 to 1,714,704
_RS07540
BPHYT_RS07545: BPHYT_RS07545 - epimerase, at 1,714,897 to 1,715,820
_RS07545
Position (kb) 1713
1714
1715 Strain fitness (log2 ratio) -1
0
1
2 at 1713.745 kb on + strand at 1713.834 kb on - strand, within BPHYT_RS07535 at 1714.006 kb on + strand, within BPHYT_RS07535 at 1714.007 kb on - strand, within BPHYT_RS07535 at 1714.169 kb on + strand, within BPHYT_RS07535 at 1714.215 kb on - strand, within BPHYT_RS07535 at 1714.249 kb on - strand, within BPHYT_RS07535 at 1714.622 kb on + strand, within BPHYT_RS07540 at 1714.914 kb on + strand at 1714.914 kb on + strand at 1714.914 kb on + strand at 1714.915 kb on - strand at 1715.016 kb on + strand, within BPHYT_RS07545 at 1715.166 kb on - strand, within BPHYT_RS07545 at 1715.228 kb on + strand, within BPHYT_RS07545 at 1715.228 kb on + strand, within BPHYT_RS07545 at 1715.229 kb on - strand, within BPHYT_RS07545 at 1715.285 kb on - strand, within BPHYT_RS07545 at 1715.408 kb on - strand, within BPHYT_RS07545 at 1715.408 kb on - strand, within BPHYT_RS07545
Per-strain Table
Position Strand Gene LocusTag Fraction Sebacic (C) remove 1,713,745 + +1.1 1,713,834 - BPHYT_RS07535 0.20 -0.6 1,714,006 + BPHYT_RS07535 0.44 -0.5 1,714,007 - BPHYT_RS07535 0.44 -0.0 1,714,169 + BPHYT_RS07535 0.66 +1.9 1,714,215 - BPHYT_RS07535 0.72 -0.7 1,714,249 - BPHYT_RS07535 0.77 +0.1 1,714,622 + BPHYT_RS07540 0.55 -0.6 1,714,914 + +0.1 1,714,914 + +0.1 1,714,914 + +0.1 1,714,915 - +0.4 1,715,016 + BPHYT_RS07545 0.13 +0.6 1,715,166 - BPHYT_RS07545 0.29 -0.7 1,715,228 + BPHYT_RS07545 0.36 +0.2 1,715,228 + BPHYT_RS07545 0.36 -0.2 1,715,229 - BPHYT_RS07545 0.36 +0.3 1,715,285 - BPHYT_RS07545 0.42 -1.0 1,715,408 - BPHYT_RS07545 0.55 +0.2 1,715,408 - BPHYT_RS07545 0.55 -0.8
Or see this region's nucleotide sequence