Experiment: Varel_Bryant_medium_Glucose with Benzethonium chloride 0.000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0071 and BT0072 are separated by 217 nucleotides BT0072 and BT0073 overlap by 16 nucleotides BT0073 and BT0074 overlap by 10 nucleotides
BT0071: BT0071 - hypothetical protein (NCBI ptt file), at 68,637 to 69,134
BT0071
BT0072: BT0072 - putative ABC transporter, ATP-binding protein (NCBI ptt file), at 69,352 to 69,603
BT0072
BT0073: BT0073 - putative ABC transporter, ATP-binding protein (NCBI ptt file), at 69,588 to 71,018
BT0073
BT0074: BT0074 - hypothetical protein (NCBI ptt file), at 71,009 to 71,500
BT0074
Position (kb) 69
70
71
72 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 68.616 kb on - strand at 68.651 kb on - strand at 68.896 kb on - strand, within BT0071 at 68.904 kb on + strand, within BT0071 at 68.905 kb on - strand, within BT0071 at 68.938 kb on + strand, within BT0071 at 68.938 kb on + strand, within BT0071 at 68.938 kb on + strand, within BT0071 at 68.940 kb on + strand, within BT0071 at 68.941 kb on - strand, within BT0071 at 68.941 kb on - strand, within BT0071 at 68.941 kb on - strand, within BT0071 at 68.980 kb on + strand, within BT0071 at 69.068 kb on + strand, within BT0071 at 69.148 kb on + strand at 69.148 kb on + strand at 69.150 kb on + strand at 69.153 kb on - strand at 69.299 kb on + strand at 69.566 kb on - strand, within BT0072 at 69.589 kb on + strand at 69.875 kb on + strand, within BT0073 at 69.956 kb on + strand, within BT0073 at 69.984 kb on - strand, within BT0073 at 70.209 kb on + strand, within BT0073 at 70.265 kb on + strand, within BT0073 at 70.468 kb on + strand, within BT0073 at 70.469 kb on - strand, within BT0073 at 70.701 kb on - strand, within BT0073 at 70.859 kb on + strand, within BT0073 at 70.860 kb on - strand, within BT0073 at 70.994 kb on + strand at 70.994 kb on + strand at 71.029 kb on - strand at 71.030 kb on + strand at 71.031 kb on - strand at 71.034 kb on + strand at 71.116 kb on - strand, within BT0074 at 71.155 kb on + strand, within BT0074 at 71.156 kb on - strand, within BT0074 at 71.251 kb on - strand, within BT0074 at 71.251 kb on - strand, within BT0074 at 71.610 kb on + strand at 71.614 kb on - strand at 71.615 kb on + strand at 71.615 kb on + strand at 71.616 kb on - strand at 71.616 kb on - strand at 71.635 kb on + strand at 71.754 kb on + strand at 71.763 kb on + strand at 71.852 kb on - strand at 71.862 kb on + strand at 71.862 kb on + strand at 71.863 kb on - strand at 71.873 kb on - strand at 71.894 kb on - strand at 71.918 kb on + strand at 71.919 kb on - strand at 71.944 kb on + strand at 71.945 kb on - strand at 71.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Benzethonium chloride 0.000390625 mM remove 68,616 - -1.4 68,651 - +0.6 68,896 - BT0071 0.52 -1.6 68,904 + BT0071 0.54 +0.0 68,905 - BT0071 0.54 -0.3 68,938 + BT0071 0.60 -0.6 68,938 + BT0071 0.60 +0.0 68,938 + BT0071 0.60 +0.0 68,940 + BT0071 0.61 -1.6 68,941 - BT0071 0.61 -0.6 68,941 - BT0071 0.61 -1.0 68,941 - BT0071 0.61 -1.3 68,980 + BT0071 0.69 -1.6 69,068 + BT0071 0.87 -2.0 69,148 + -1.0 69,148 + -1.6 69,150 + -2.8 69,153 - -1.0 69,299 + +0.2 69,566 - BT0072 0.85 -1.0 69,589 + -2.2 69,875 + BT0073 0.20 -4.7 69,956 + BT0073 0.26 -1.6 69,984 - BT0073 0.28 +0.0 70,209 + BT0073 0.43 -2.6 70,265 + BT0073 0.47 +0.0 70,468 + BT0073 0.61 -2.0 70,469 - BT0073 0.62 -1.0 70,701 - BT0073 0.78 -0.6 70,859 + BT0073 0.89 -2.4 70,860 - BT0073 0.89 -1.6 70,994 + +1.0 70,994 + -0.6 71,029 - +0.0 71,030 + -0.5 71,031 - -2.0 71,034 + -0.6 71,116 - BT0074 0.22 -1.0 71,155 + BT0074 0.30 -2.8 71,156 - BT0074 0.30 -2.8 71,251 - BT0074 0.49 -1.0 71,251 - BT0074 0.49 -0.6 71,610 + -0.3 71,614 - -1.0 71,615 + -1.4 71,615 + -1.7 71,616 - -1.2 71,616 - -1.6 71,635 + -2.2 71,754 + -1.0 71,763 + -1.0 71,852 - -1.9 71,862 + +0.0 71,862 + -1.0 71,863 - -1.8 71,873 - +0.0 71,894 - -1.6 71,918 + +0.0 71,919 - +0.0 71,944 + -1.0 71,945 - -1.6 71,998 + +0.4
Or see this region's nucleotide sequence