Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1777

Experiment: MoYLS4 with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntribB and DVU1776 are separated by 251 nucleotidesDVU1776 and cynT are separated by 108 nucleotidescynT and DVU1778 overlap by 71 nucleotides DVU1775: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase (TIGR), at 1,839,892 to 1,840,536 ribB DVU1776: DVU1776 - hypothetical protein (TIGR), at 1,840,788 to 1,840,901 DVU1776 DVU1777: cynT - carbonic anhydrase (TIGR), at 1,841,010 to 1,841,747 cynT DVU1778: DVU1778 - cation efflux family protein (TIGR), at 1,841,677 to 1,843,122 DVU1778 Position (kb) 1841 1842Strain fitness (log2 ratio) -2 -1 0 1at 1840.034 kb on + strand, within ribBat 1840.034 kb on + strand, within ribBat 1840.035 kb on + strand, within ribBat 1840.042 kb on - strand, within ribBat 1840.453 kb on + strand, within ribBat 1840.453 kb on + strand, within ribBat 1840.461 kb on - strand, within ribBat 1840.461 kb on - strand, within ribBat 1840.513 kb on - strandat 1840.513 kb on - strandat 1840.640 kb on + strandat 1840.672 kb on - strandat 1840.676 kb on + strandat 1840.684 kb on - strandat 1841.165 kb on - strand, within cynTat 1841.634 kb on + strand, within cynTat 1841.739 kb on + strandat 1841.739 kb on + strandat 1841.856 kb on + strand, within DVU1778at 1841.907 kb on + strand, within DVU1778at 1841.925 kb on - strand, within DVU1778at 1842.059 kb on + strand, within DVU1778at 1842.059 kb on + strand, within DVU1778at 1842.067 kb on - strand, within DVU1778at 1842.113 kb on - strand, within DVU1778at 1842.116 kb on - strand, within DVU1778at 1842.152 kb on - strand, within DVU1778at 1842.170 kb on - strand, within DVU1778at 1842.203 kb on + strand, within DVU1778at 1842.212 kb on + strand, within DVU1778at 1842.304 kb on + strand, within DVU1778at 1842.429 kb on + strand, within DVU1778at 1842.541 kb on - strand, within DVU1778at 1842.582 kb on - strand, within DVU1778at 1842.601 kb on - strand, within DVU1778at 1842.625 kb on - strand, within DVU1778

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 2mM
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1,840,034 + ribB DVU1775 0.22 +0.3
1,840,034 + ribB DVU1775 0.22 -0.7
1,840,035 + ribB DVU1775 0.22 -0.0
1,840,042 - ribB DVU1775 0.23 +0.7
1,840,453 + ribB DVU1775 0.87 +0.7
1,840,453 + ribB DVU1775 0.87 -0.3
1,840,461 - ribB DVU1775 0.88 -0.3
1,840,461 - ribB DVU1775 0.88 -0.2
1,840,513 - -1.2
1,840,513 - -0.1
1,840,640 + -0.2
1,840,672 - -0.0
1,840,676 + -0.2
1,840,684 - -0.3
1,841,165 - cynT DVU1777 0.21 +0.8
1,841,634 + cynT DVU1777 0.85 +0.7
1,841,739 + -1.9
1,841,739 + -0.6
1,841,856 + DVU1778 0.12 -0.1
1,841,907 + DVU1778 0.16 +0.6
1,841,925 - DVU1778 0.17 +0.3
1,842,059 + DVU1778 0.26 -0.1
1,842,059 + DVU1778 0.26 -0.5
1,842,067 - DVU1778 0.27 -0.0
1,842,113 - DVU1778 0.30 -0.2
1,842,116 - DVU1778 0.30 -1.2
1,842,152 - DVU1778 0.33 +0.5
1,842,170 - DVU1778 0.34 -0.6
1,842,203 + DVU1778 0.36 -0.3
1,842,212 + DVU1778 0.37 -1.3
1,842,304 + DVU1778 0.43 -0.8
1,842,429 + DVU1778 0.52 +0.8
1,842,541 - DVU1778 0.60 -0.6
1,842,582 - DVU1778 0.63 -0.6
1,842,601 - DVU1778 0.64 -0.3
1,842,625 - DVU1778 0.66 -0.4

Or see this region's nucleotide sequence