Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5909

Experiment: RCH2 defined with copper (II) chloride 0.03 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5906 and Pf6N2E2_5907 are separated by 158 nucleotidesPf6N2E2_5907 and Pf6N2E2_5908 are separated by 26 nucleotidesPf6N2E2_5908 and Pf6N2E2_5909 are separated by 2 nucleotidesPf6N2E2_5909 and Pf6N2E2_5910 are separated by 78 nucleotidesPf6N2E2_5910 and Pf6N2E2_5911 are separated by 25 nucleotides Pf6N2E2_5906 - Flp pilus assembly protein, pilin Flp, at 6,726,430 to 6,726,654 _5906 Pf6N2E2_5907 - Flp pilus assembly protein, pilin Flp, at 6,726,813 to 6,727,007 _5907 Pf6N2E2_5908 - Type IV prepilin peptidase TadV/CpaA, at 6,727,034 to 6,727,564 _5908 Pf6N2E2_5909 - Predicted ATPase with chaperone activity, associated with Flp pilus assembly, at 6,727,567 to 6,728,895 _5909 Pf6N2E2_5910 - Flp pilus assembly protein RcpC/CpaB, at 6,728,974 to 6,729,723 _5910 Pf6N2E2_5911 - Von Willebrand factor type A domain protein, associated with Flp pilus assembly, at 6,729,749 to 6,731,110 _5911 Position (kb) 6727 6728 6729Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6726.687 kb on - strandat 6726.700 kb on + strandat 6726.727 kb on + strandat 6726.778 kb on + strandat 6726.778 kb on + strandat 6726.784 kb on - strandat 6726.829 kb on + strandat 6726.829 kb on + strandat 6726.829 kb on + strandat 6726.829 kb on + strandat 6726.829 kb on + strandat 6726.830 kb on - strandat 6727.172 kb on + strand, within Pf6N2E2_5908at 6727.172 kb on + strand, within Pf6N2E2_5908at 6727.173 kb on - strand, within Pf6N2E2_5908at 6727.173 kb on - strand, within Pf6N2E2_5908at 6727.173 kb on - strand, within Pf6N2E2_5908at 6727.173 kb on - strand, within Pf6N2E2_5908at 6727.173 kb on - strand, within Pf6N2E2_5908at 6727.174 kb on + strand, within Pf6N2E2_5908at 6727.175 kb on - strand, within Pf6N2E2_5908at 6727.175 kb on - strand, within Pf6N2E2_5908at 6727.206 kb on + strand, within Pf6N2E2_5908at 6727.207 kb on - strand, within Pf6N2E2_5908at 6727.207 kb on - strand, within Pf6N2E2_5908at 6727.243 kb on + strand, within Pf6N2E2_5908at 6727.244 kb on - strand, within Pf6N2E2_5908at 6727.244 kb on - strand, within Pf6N2E2_5908at 6727.247 kb on + strand, within Pf6N2E2_5908at 6727.247 kb on + strand, within Pf6N2E2_5908at 6727.247 kb on + strand, within Pf6N2E2_5908at 6727.247 kb on + strand, within Pf6N2E2_5908at 6727.247 kb on + strand, within Pf6N2E2_5908at 6727.248 kb on - strand, within Pf6N2E2_5908at 6727.248 kb on - strand, within Pf6N2E2_5908at 6727.248 kb on - strand, within Pf6N2E2_5908at 6727.248 kb on - strand, within Pf6N2E2_5908at 6727.320 kb on - strand, within Pf6N2E2_5908at 6727.445 kb on + strand, within Pf6N2E2_5908at 6727.446 kb on - strand, within Pf6N2E2_5908at 6727.446 kb on - strand, within Pf6N2E2_5908at 6727.562 kb on + strandat 6727.563 kb on - strandat 6727.563 kb on - strandat 6727.563 kb on - strandat 6727.563 kb on - strandat 6727.838 kb on + strand, within Pf6N2E2_5909at 6727.838 kb on + strand, within Pf6N2E2_5909at 6727.839 kb on - strand, within Pf6N2E2_5909at 6727.909 kb on + strand, within Pf6N2E2_5909at 6727.910 kb on - strand, within Pf6N2E2_5909at 6727.942 kb on + strand, within Pf6N2E2_5909at 6727.942 kb on + strand, within Pf6N2E2_5909at 6727.942 kb on + strand, within Pf6N2E2_5909at 6727.943 kb on - strand, within Pf6N2E2_5909at 6728.089 kb on + strand, within Pf6N2E2_5909at 6728.089 kb on + strand, within Pf6N2E2_5909at 6728.089 kb on + strand, within Pf6N2E2_5909at 6728.089 kb on + strand, within Pf6N2E2_5909at 6728.090 kb on - strand, within Pf6N2E2_5909at 6728.090 kb on - strand, within Pf6N2E2_5909at 6728.090 kb on - strand, within Pf6N2E2_5909at 6728.090 kb on - strand, within Pf6N2E2_5909at 6728.090 kb on - strand, within Pf6N2E2_5909at 6728.090 kb on - strand, within Pf6N2E2_5909at 6728.116 kb on + strand, within Pf6N2E2_5909at 6728.116 kb on + strand, within Pf6N2E2_5909at 6728.116 kb on + strand, within Pf6N2E2_5909at 6728.117 kb on - strand, within Pf6N2E2_5909at 6728.117 kb on - strand, within Pf6N2E2_5909at 6728.117 kb on - strand, within Pf6N2E2_5909at 6728.203 kb on + strand, within Pf6N2E2_5909at 6728.204 kb on - strand, within Pf6N2E2_5909at 6728.204 kb on - strand, within Pf6N2E2_5909at 6728.353 kb on + strand, within Pf6N2E2_5909at 6728.374 kb on + strand, within Pf6N2E2_5909at 6728.617 kb on + strand, within Pf6N2E2_5909at 6728.618 kb on - strand, within Pf6N2E2_5909at 6728.618 kb on - strand, within Pf6N2E2_5909at 6728.654 kb on - strand, within Pf6N2E2_5909at 6728.698 kb on + strand, within Pf6N2E2_5909at 6728.698 kb on + strand, within Pf6N2E2_5909at 6728.719 kb on + strand, within Pf6N2E2_5909at 6728.720 kb on - strand, within Pf6N2E2_5909at 6728.720 kb on - strand, within Pf6N2E2_5909at 6728.720 kb on - strand, within Pf6N2E2_5909at 6728.720 kb on - strand, within Pf6N2E2_5909at 6728.720 kb on - strand, within Pf6N2E2_5909at 6728.737 kb on + strand, within Pf6N2E2_5909at 6728.737 kb on + strand, within Pf6N2E2_5909at 6728.737 kb on + strand, within Pf6N2E2_5909at 6728.737 kb on + strand, within Pf6N2E2_5909at 6728.737 kb on + strand, within Pf6N2E2_5909at 6728.737 kb on + strand, within Pf6N2E2_5909at 6728.738 kb on - strand, within Pf6N2E2_5909at 6728.738 kb on - strand, within Pf6N2E2_5909at 6728.738 kb on - strand, within Pf6N2E2_5909at 6728.738 kb on - strand, within Pf6N2E2_5909at 6728.812 kb on + strandat 6728.869 kb on + strandat 6728.869 kb on + strandat 6728.869 kb on + strandat 6728.869 kb on + strandat 6728.869 kb on + strandat 6728.869 kb on + strandat 6728.870 kb on - strandat 6728.870 kb on - strandat 6728.870 kb on - strandat 6728.870 kb on - strandat 6728.922 kb on + strandat 6728.922 kb on + strandat 6728.923 kb on - strandat 6729.156 kb on - strand, within Pf6N2E2_5910at 6729.644 kb on + strand, within Pf6N2E2_5910at 6729.645 kb on - strand, within Pf6N2E2_5910at 6729.782 kb on + strandat 6729.782 kb on + strandat 6729.782 kb on + strandat 6729.782 kb on + strandat 6729.783 kb on - strandat 6729.837 kb on + strandat 6729.837 kb on + strandat 6729.837 kb on + strandat 6729.837 kb on + strandat 6729.837 kb on + strandat 6729.837 kb on + strandat 6729.838 kb on - strandat 6729.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with copper (II) chloride 0.03 mM
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6,726,687 - -0.9
6,726,700 + +0.4
6,726,727 + -2.2
6,726,778 + +0.8
6,726,778 + -0.9
6,726,784 - +1.0
6,726,829 + -0.8
6,726,829 + -0.7
6,726,829 + -0.2
6,726,829 + -0.8
6,726,829 + +0.9
6,726,830 - +0.7
6,727,172 + Pf6N2E2_5908 0.26 -1.0
6,727,172 + Pf6N2E2_5908 0.26 -0.1
6,727,173 - Pf6N2E2_5908 0.26 -1.6
6,727,173 - Pf6N2E2_5908 0.26 +1.2
6,727,173 - Pf6N2E2_5908 0.26 -0.6
6,727,173 - Pf6N2E2_5908 0.26 -1.2
6,727,173 - Pf6N2E2_5908 0.26 +0.6
6,727,174 + Pf6N2E2_5908 0.26 +1.0
6,727,175 - Pf6N2E2_5908 0.27 -0.2
6,727,175 - Pf6N2E2_5908 0.27 +1.7
6,727,206 + Pf6N2E2_5908 0.32 -1.4
6,727,207 - Pf6N2E2_5908 0.33 -0.5
6,727,207 - Pf6N2E2_5908 0.33 -1.8
6,727,243 + Pf6N2E2_5908 0.39 +0.4
6,727,244 - Pf6N2E2_5908 0.40 +0.9
6,727,244 - Pf6N2E2_5908 0.40 +0.5
6,727,247 + Pf6N2E2_5908 0.40 +0.2
6,727,247 + Pf6N2E2_5908 0.40 -1.0
6,727,247 + Pf6N2E2_5908 0.40 +1.3
6,727,247 + Pf6N2E2_5908 0.40 -0.6
6,727,247 + Pf6N2E2_5908 0.40 +0.4
6,727,248 - Pf6N2E2_5908 0.40 -1.6
6,727,248 - Pf6N2E2_5908 0.40 -0.0
6,727,248 - Pf6N2E2_5908 0.40 +1.0
6,727,248 - Pf6N2E2_5908 0.40 -1.0
6,727,320 - Pf6N2E2_5908 0.54 -1.0
6,727,445 + Pf6N2E2_5908 0.77 -1.6
6,727,446 - Pf6N2E2_5908 0.78 -0.3
6,727,446 - Pf6N2E2_5908 0.78 +1.0
6,727,562 + +0.3
6,727,563 - -0.5
6,727,563 - +0.3
6,727,563 - +0.0
6,727,563 - -1.7
6,727,838 + Pf6N2E2_5909 0.20 -0.6
6,727,838 + Pf6N2E2_5909 0.20 +0.2
6,727,839 - Pf6N2E2_5909 0.20 +1.6
6,727,909 + Pf6N2E2_5909 0.26 +0.3
6,727,910 - Pf6N2E2_5909 0.26 +1.7
6,727,942 + Pf6N2E2_5909 0.28 +1.0
6,727,942 + Pf6N2E2_5909 0.28 -3.8
6,727,942 + Pf6N2E2_5909 0.28 -1.0
6,727,943 - Pf6N2E2_5909 0.28 -0.0
6,728,089 + Pf6N2E2_5909 0.39 -2.0
6,728,089 + Pf6N2E2_5909 0.39 -0.1
6,728,089 + Pf6N2E2_5909 0.39 -1.0
6,728,089 + Pf6N2E2_5909 0.39 -0.5
6,728,090 - Pf6N2E2_5909 0.39 -0.2
6,728,090 - Pf6N2E2_5909 0.39 +0.3
6,728,090 - Pf6N2E2_5909 0.39 +0.6
6,728,090 - Pf6N2E2_5909 0.39 -0.2
6,728,090 - Pf6N2E2_5909 0.39 -1.6
6,728,090 - Pf6N2E2_5909 0.39 +1.2
6,728,116 + Pf6N2E2_5909 0.41 -1.0
6,728,116 + Pf6N2E2_5909 0.41 -0.7
6,728,116 + Pf6N2E2_5909 0.41 -1.0
6,728,117 - Pf6N2E2_5909 0.41 -1.4
6,728,117 - Pf6N2E2_5909 0.41 +0.2
6,728,117 - Pf6N2E2_5909 0.41 -1.4
6,728,203 + Pf6N2E2_5909 0.48 -0.6
6,728,204 - Pf6N2E2_5909 0.48 +1.5
6,728,204 - Pf6N2E2_5909 0.48 -0.6
6,728,353 + Pf6N2E2_5909 0.59 -1.4
6,728,374 + Pf6N2E2_5909 0.61 +0.1
6,728,617 + Pf6N2E2_5909 0.79 -0.8
6,728,618 - Pf6N2E2_5909 0.79 +0.7
6,728,618 - Pf6N2E2_5909 0.79 -0.6
6,728,654 - Pf6N2E2_5909 0.82 -0.7
6,728,698 + Pf6N2E2_5909 0.85 +0.4
6,728,698 + Pf6N2E2_5909 0.85 -1.2
6,728,719 + Pf6N2E2_5909 0.87 +0.0
6,728,720 - Pf6N2E2_5909 0.87 +0.4
6,728,720 - Pf6N2E2_5909 0.87 -1.0
6,728,720 - Pf6N2E2_5909 0.87 -0.4
6,728,720 - Pf6N2E2_5909 0.87 -2.4
6,728,720 - Pf6N2E2_5909 0.87 +1.0
6,728,737 + Pf6N2E2_5909 0.88 +1.0
6,728,737 + Pf6N2E2_5909 0.88 +1.5
6,728,737 + Pf6N2E2_5909 0.88 -1.4
6,728,737 + Pf6N2E2_5909 0.88 -0.5
6,728,737 + Pf6N2E2_5909 0.88 -0.9
6,728,737 + Pf6N2E2_5909 0.88 -1.4
6,728,738 - Pf6N2E2_5909 0.88 +2.0
6,728,738 - Pf6N2E2_5909 0.88 +1.0
6,728,738 - Pf6N2E2_5909 0.88 -0.3
6,728,738 - Pf6N2E2_5909 0.88 -0.9
6,728,812 + -2.4
6,728,869 + -1.4
6,728,869 + +0.4
6,728,869 + -1.0
6,728,869 + -0.6
6,728,869 + +1.0
6,728,869 + +1.0
6,728,870 - -1.4
6,728,870 - -1.2
6,728,870 - -1.1
6,728,870 - +1.7
6,728,922 + -2.5
6,728,922 + -0.6
6,728,923 - +0.7
6,729,156 - Pf6N2E2_5910 0.24 +1.0
6,729,644 + Pf6N2E2_5910 0.89 -0.0
6,729,645 - Pf6N2E2_5910 0.89 +0.5
6,729,782 + +1.7
6,729,782 + +1.5
6,729,782 + -1.7
6,729,782 + -3.0
6,729,783 - -2.6
6,729,837 + +0.7
6,729,837 + +0.0
6,729,837 + -0.3
6,729,837 + -2.4
6,729,837 + +0.5
6,729,837 + +1.3
6,729,838 - +0.2
6,729,838 - +0.1

Or see this region's nucleotide sequence