Experiment: RCH2 defined with copper (II) chloride 0.03 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5074 and Pf6N2E2_5075 are separated by 115 nucleotides Pf6N2E2_5075 and Pf6N2E2_5076 are separated by 43 nucleotides
Pf6N2E2_5074 - Catalase (EC 1.11.1.6), at 5,849,985 to 5,851,526
_5074
Pf6N2E2_5075 - FOG: Ankyrin repeat, at 5,851,642 to 5,852,193
_5075
Pf6N2E2_5076 - DNA repair protein RadA, at 5,852,237 to 5,853,604
_5076
Position (kb) 5851
5852
5853 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5850.649 kb on + strand, within Pf6N2E2_5074 at 5850.649 kb on + strand, within Pf6N2E2_5074 at 5850.649 kb on + strand, within Pf6N2E2_5074 at 5850.649 kb on + strand, within Pf6N2E2_5074 at 5850.649 kb on + strand, within Pf6N2E2_5074 at 5850.649 kb on + strand, within Pf6N2E2_5074 at 5850.650 kb on - strand, within Pf6N2E2_5074 at 5850.650 kb on - strand, within Pf6N2E2_5074 at 5850.650 kb on - strand, within Pf6N2E2_5074 at 5850.657 kb on + strand, within Pf6N2E2_5074 at 5850.657 kb on + strand, within Pf6N2E2_5074 at 5850.657 kb on + strand, within Pf6N2E2_5074 at 5850.658 kb on - strand, within Pf6N2E2_5074 at 5850.658 kb on - strand, within Pf6N2E2_5074 at 5850.658 kb on - strand, within Pf6N2E2_5074 at 5850.658 kb on - strand, within Pf6N2E2_5074 at 5850.690 kb on + strand, within Pf6N2E2_5074 at 5850.771 kb on + strand, within Pf6N2E2_5074 at 5850.771 kb on + strand, within Pf6N2E2_5074 at 5850.779 kb on + strand, within Pf6N2E2_5074 at 5850.779 kb on + strand, within Pf6N2E2_5074 at 5850.803 kb on + strand, within Pf6N2E2_5074 at 5850.803 kb on + strand, within Pf6N2E2_5074 at 5850.803 kb on + strand, within Pf6N2E2_5074 at 5850.804 kb on - strand, within Pf6N2E2_5074 at 5850.804 kb on - strand, within Pf6N2E2_5074 at 5850.804 kb on - strand, within Pf6N2E2_5074 at 5850.806 kb on + strand, within Pf6N2E2_5074 at 5850.806 kb on + strand, within Pf6N2E2_5074 at 5850.807 kb on - strand, within Pf6N2E2_5074 at 5850.807 kb on - strand, within Pf6N2E2_5074 at 5850.807 kb on - strand, within Pf6N2E2_5074 at 5850.809 kb on + strand, within Pf6N2E2_5074 at 5850.810 kb on - strand, within Pf6N2E2_5074 at 5850.810 kb on - strand, within Pf6N2E2_5074 at 5850.837 kb on + strand, within Pf6N2E2_5074 at 5850.837 kb on + strand, within Pf6N2E2_5074 at 5850.837 kb on + strand, within Pf6N2E2_5074 at 5850.837 kb on + strand, within Pf6N2E2_5074 at 5850.837 kb on + strand, within Pf6N2E2_5074 at 5850.838 kb on - strand, within Pf6N2E2_5074 at 5850.838 kb on - strand, within Pf6N2E2_5074 at 5850.838 kb on - strand, within Pf6N2E2_5074 at 5850.838 kb on - strand, within Pf6N2E2_5074 at 5850.838 kb on - strand, within Pf6N2E2_5074 at 5850.838 kb on - strand, within Pf6N2E2_5074 at 5851.083 kb on + strand, within Pf6N2E2_5074 at 5851.083 kb on + strand, within Pf6N2E2_5074 at 5851.083 kb on + strand, within Pf6N2E2_5074 at 5851.083 kb on + strand, within Pf6N2E2_5074 at 5851.083 kb on + strand, within Pf6N2E2_5074 at 5851.084 kb on - strand, within Pf6N2E2_5074 at 5851.084 kb on - strand, within Pf6N2E2_5074 at 5851.084 kb on - strand, within Pf6N2E2_5074 at 5851.084 kb on - strand, within Pf6N2E2_5074 at 5851.245 kb on + strand, within Pf6N2E2_5074 at 5851.245 kb on + strand, within Pf6N2E2_5074 at 5851.245 kb on + strand, within Pf6N2E2_5074 at 5851.246 kb on - strand, within Pf6N2E2_5074 at 5851.326 kb on + strand, within Pf6N2E2_5074 at 5851.432 kb on - strand at 5851.432 kb on - strand at 5851.450 kb on - strand at 5851.625 kb on - strand at 5851.625 kb on - strand at 5851.661 kb on + strand at 5851.691 kb on + strand at 5851.691 kb on + strand at 5851.730 kb on + strand, within Pf6N2E2_5075 at 5851.731 kb on - strand, within Pf6N2E2_5075 at 5851.750 kb on + strand, within Pf6N2E2_5075 at 5851.750 kb on + strand, within Pf6N2E2_5075 at 5851.753 kb on + strand, within Pf6N2E2_5075 at 5851.753 kb on + strand, within Pf6N2E2_5075 at 5851.754 kb on - strand, within Pf6N2E2_5075 at 5851.800 kb on + strand, within Pf6N2E2_5075 at 5851.801 kb on - strand, within Pf6N2E2_5075 at 5851.813 kb on + strand, within Pf6N2E2_5075 at 5851.843 kb on + strand, within Pf6N2E2_5075 at 5851.843 kb on + strand, within Pf6N2E2_5075 at 5851.868 kb on - strand, within Pf6N2E2_5075 at 5851.868 kb on - strand, within Pf6N2E2_5075 at 5851.868 kb on - strand, within Pf6N2E2_5075 at 5851.868 kb on - strand, within Pf6N2E2_5075 at 5851.942 kb on - strand, within Pf6N2E2_5075 at 5851.942 kb on - strand, within Pf6N2E2_5075 at 5852.056 kb on + strand, within Pf6N2E2_5075 at 5852.056 kb on + strand, within Pf6N2E2_5075 at 5852.056 kb on + strand, within Pf6N2E2_5075 at 5852.056 kb on + strand, within Pf6N2E2_5075 at 5852.056 kb on + strand, within Pf6N2E2_5075 at 5852.056 kb on - strand, within Pf6N2E2_5075 at 5852.057 kb on - strand, within Pf6N2E2_5075 at 5852.057 kb on - strand, within Pf6N2E2_5075 at 5852.057 kb on - strand, within Pf6N2E2_5075 at 5852.057 kb on - strand, within Pf6N2E2_5075 at 5852.057 kb on - strand, within Pf6N2E2_5075 at 5852.057 kb on - strand, within Pf6N2E2_5075 at 5852.057 kb on - strand, within Pf6N2E2_5075 at 5852.057 kb on - strand, within Pf6N2E2_5075 at 5852.258 kb on + strand at 5852.259 kb on - strand at 5852.259 kb on - strand at 5852.259 kb on - strand at 5852.259 kb on - strand at 5852.502 kb on + strand, within Pf6N2E2_5076 at 5852.503 kb on - strand, within Pf6N2E2_5076 at 5852.603 kb on + strand, within Pf6N2E2_5076 at 5852.604 kb on - strand, within Pf6N2E2_5076 at 5852.604 kb on - strand, within Pf6N2E2_5076 at 5852.604 kb on - strand, within Pf6N2E2_5076 at 5852.877 kb on + strand, within Pf6N2E2_5076 at 5852.878 kb on - strand, within Pf6N2E2_5076 at 5852.948 kb on + strand, within Pf6N2E2_5076 at 5852.948 kb on + strand, within Pf6N2E2_5076
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with copper (II) chloride 0.03 mM remove 5,850,649 + Pf6N2E2_5074 0.43 +1.4 5,850,649 + Pf6N2E2_5074 0.43 +0.4 5,850,649 + Pf6N2E2_5074 0.43 -1.3 5,850,649 + Pf6N2E2_5074 0.43 +0.6 5,850,649 + Pf6N2E2_5074 0.43 +1.2 5,850,649 + Pf6N2E2_5074 0.43 +0.8 5,850,650 - Pf6N2E2_5074 0.43 -0.0 5,850,650 - Pf6N2E2_5074 0.43 -0.1 5,850,650 - Pf6N2E2_5074 0.43 -0.5 5,850,657 + Pf6N2E2_5074 0.44 -0.3 5,850,657 + Pf6N2E2_5074 0.44 +0.5 5,850,657 + Pf6N2E2_5074 0.44 -0.2 5,850,658 - Pf6N2E2_5074 0.44 +0.1 5,850,658 - Pf6N2E2_5074 0.44 +1.2 5,850,658 - Pf6N2E2_5074 0.44 +0.9 5,850,658 - Pf6N2E2_5074 0.44 +1.7 5,850,690 + Pf6N2E2_5074 0.46 +0.1 5,850,771 + Pf6N2E2_5074 0.51 -0.1 5,850,771 + Pf6N2E2_5074 0.51 +0.7 5,850,779 + Pf6N2E2_5074 0.51 -2.0 5,850,779 + Pf6N2E2_5074 0.51 +0.7 5,850,803 + Pf6N2E2_5074 0.53 +0.6 5,850,803 + Pf6N2E2_5074 0.53 +0.6 5,850,803 + Pf6N2E2_5074 0.53 -0.0 5,850,804 - Pf6N2E2_5074 0.53 -0.5 5,850,804 - Pf6N2E2_5074 0.53 +0.2 5,850,804 - Pf6N2E2_5074 0.53 +1.7 5,850,806 + Pf6N2E2_5074 0.53 -2.5 5,850,806 + Pf6N2E2_5074 0.53 -0.6 5,850,807 - Pf6N2E2_5074 0.53 -1.1 5,850,807 - Pf6N2E2_5074 0.53 +0.3 5,850,807 - Pf6N2E2_5074 0.53 +0.1 5,850,809 + Pf6N2E2_5074 0.53 +0.1 5,850,810 - Pf6N2E2_5074 0.54 +1.3 5,850,810 - Pf6N2E2_5074 0.54 +0.2 5,850,837 + Pf6N2E2_5074 0.55 +0.8 5,850,837 + Pf6N2E2_5074 0.55 +0.4 5,850,837 + Pf6N2E2_5074 0.55 -2.0 5,850,837 + Pf6N2E2_5074 0.55 +1.0 5,850,837 + Pf6N2E2_5074 0.55 +0.3 5,850,838 - Pf6N2E2_5074 0.55 +1.3 5,850,838 - Pf6N2E2_5074 0.55 -0.0 5,850,838 - Pf6N2E2_5074 0.55 -0.6 5,850,838 - Pf6N2E2_5074 0.55 +0.3 5,850,838 - Pf6N2E2_5074 0.55 +0.9 5,850,838 - Pf6N2E2_5074 0.55 +0.3 5,851,083 + Pf6N2E2_5074 0.71 -1.5 5,851,083 + Pf6N2E2_5074 0.71 +0.8 5,851,083 + Pf6N2E2_5074 0.71 +0.9 5,851,083 + Pf6N2E2_5074 0.71 -1.0 5,851,083 + Pf6N2E2_5074 0.71 -2.3 5,851,084 - Pf6N2E2_5074 0.71 -1.3 5,851,084 - Pf6N2E2_5074 0.71 -2.3 5,851,084 - Pf6N2E2_5074 0.71 -1.8 5,851,084 - Pf6N2E2_5074 0.71 -1.1 5,851,245 + Pf6N2E2_5074 0.82 -0.6 5,851,245 + Pf6N2E2_5074 0.82 +1.0 5,851,245 + Pf6N2E2_5074 0.82 -1.9 5,851,246 - Pf6N2E2_5074 0.82 +1.3 5,851,326 + Pf6N2E2_5074 0.87 +0.6 5,851,432 - +0.5 5,851,432 - -1.3 5,851,450 - -2.1 5,851,625 - +0.5 5,851,625 - -0.1 5,851,661 + -0.5 5,851,691 + -0.3 5,851,691 + -0.4 5,851,730 + Pf6N2E2_5075 0.16 -1.4 5,851,731 - Pf6N2E2_5075 0.16 -0.3 5,851,750 + Pf6N2E2_5075 0.20 +0.6 5,851,750 + Pf6N2E2_5075 0.20 -0.5 5,851,753 + Pf6N2E2_5075 0.20 -0.6 5,851,753 + Pf6N2E2_5075 0.20 -0.7 5,851,754 - Pf6N2E2_5075 0.20 +0.4 5,851,800 + Pf6N2E2_5075 0.29 +0.5 5,851,801 - Pf6N2E2_5075 0.29 +0.3 5,851,813 + Pf6N2E2_5075 0.31 -0.9 5,851,843 + Pf6N2E2_5075 0.36 -0.5 5,851,843 + Pf6N2E2_5075 0.36 -0.2 5,851,868 - Pf6N2E2_5075 0.41 -1.0 5,851,868 - Pf6N2E2_5075 0.41 -2.2 5,851,868 - Pf6N2E2_5075 0.41 -2.6 5,851,868 - Pf6N2E2_5075 0.41 +1.7 5,851,942 - Pf6N2E2_5075 0.54 +0.6 5,851,942 - Pf6N2E2_5075 0.54 +1.3 5,852,056 + Pf6N2E2_5075 0.75 -0.3 5,852,056 + Pf6N2E2_5075 0.75 -2.2 5,852,056 + Pf6N2E2_5075 0.75 -0.6 5,852,056 + Pf6N2E2_5075 0.75 +0.4 5,852,056 + Pf6N2E2_5075 0.75 -0.6 5,852,056 - Pf6N2E2_5075 0.75 -2.2 5,852,057 - Pf6N2E2_5075 0.75 -0.2 5,852,057 - Pf6N2E2_5075 0.75 -1.0 5,852,057 - Pf6N2E2_5075 0.75 +0.3 5,852,057 - Pf6N2E2_5075 0.75 -2.0 5,852,057 - Pf6N2E2_5075 0.75 -1.0 5,852,057 - Pf6N2E2_5075 0.75 +1.5 5,852,057 - Pf6N2E2_5075 0.75 -2.2 5,852,057 - Pf6N2E2_5075 0.75 -0.2 5,852,258 + -2.3 5,852,259 - +0.0 5,852,259 - +0.4 5,852,259 - -1.1 5,852,259 - -2.1 5,852,502 + Pf6N2E2_5076 0.19 -2.9 5,852,503 - Pf6N2E2_5076 0.19 +0.3 5,852,603 + Pf6N2E2_5076 0.27 +1.5 5,852,604 - Pf6N2E2_5076 0.27 -0.4 5,852,604 - Pf6N2E2_5076 0.27 +0.7 5,852,604 - Pf6N2E2_5076 0.27 +1.2 5,852,877 + Pf6N2E2_5076 0.47 -0.4 5,852,878 - Pf6N2E2_5076 0.47 +0.3 5,852,948 + Pf6N2E2_5076 0.52 -0.8 5,852,948 + Pf6N2E2_5076 0.52 +0.1
Or see this region's nucleotide sequence