Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006434

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,812,350	-				+0.4
2,812,392	+				-0.2
2,812,392	+				+0.8
2,812,393	-				-1.6
2,812,393	-				-0.9
2,812,393	-				+0.2
2,812,393	-				-0.9
2,812,393	-				+0.5
2,812,393	-				+0.1
2,812,441	+		ABIE53_006433	0.12	-0.4
2,812,442	-		ABIE53_006433	0.12	+1.4
2,812,538	+		ABIE53_006433	0.24	-0.9
2,812,538	+		ABIE53_006433	0.24	-0.8
2,812,538	+		ABIE53_006433	0.24	-1.2
2,812,538	+		ABIE53_006433	0.24	-2.9
2,812,538	+		ABIE53_006433	0.24	-0.8
2,812,539	-		ABIE53_006433	0.24	-1.3
2,812,539	-		ABIE53_006433	0.24	-1.2
2,812,539	-		ABIE53_006433	0.24	+0.1
2,812,539	-		ABIE53_006433	0.24	+2.8
2,812,539	-		ABIE53_006433	0.24	+1.2
2,812,604	+		ABIE53_006433	0.32	+0.2
2,812,604	+		ABIE53_006433	0.32	-0.2
2,812,604	+		ABIE53_006433	0.32	-1.4
2,812,744	-		ABIE53_006433	0.50	+0.6
2,813,028	+		ABIE53_006433	0.85	-1.4
2,813,029	-		ABIE53_006433	0.85	-1.5
2,813,097	+				-1.5
2,813,097	+				-1.4
2,813,097	+				+0.6
2,813,097	+				-0.7
2,813,097	+				-1.5
2,813,098	-				-0.4
2,813,098	-				+2.8
2,813,098	-				+0.6
2,813,098	-				-1.2
2,813,098	-				-0.0
2,813,098	-				-0.6
2,813,098	-				+1.9
2,813,098	-				+0.8
2,813,098	-				-0.1
2,813,098	-				-1.4
2,813,098	-				+0.1
2,813,176	+				-1.0
2,813,178	+				+3.2
2,813,178	+				+1.2
2,813,179	-				-1.7
2,813,255	-				-1.0
2,813,255	-				+0.5
2,813,292	+		ABIE53_006434	0.10	+2.2
2,813,292	+		ABIE53_006434	0.10	+0.3
2,813,292	+		ABIE53_006434	0.10	-1.6
2,813,292	+		ABIE53_006434	0.10	-0.6
2,813,292	+		ABIE53_006434	0.10	+0.1
2,813,292	+		ABIE53_006434	0.10	-1.2
2,813,292	+		ABIE53_006434	0.10	-1.0
2,813,292	+		ABIE53_006434	0.10	-0.1
2,813,292	+		ABIE53_006434	0.10	-0.8
2,813,292	+		ABIE53_006434	0.10	+2.2
2,813,292	+		ABIE53_006434	0.10	+0.8
2,813,292	+		ABIE53_006434	0.10	-0.2
2,813,292	+		ABIE53_006434	0.10	-1.7
2,813,292	+		ABIE53_006434	0.10	+1.2
2,813,292	+		ABIE53_006434	0.10	+1.2
2,813,293	-		ABIE53_006434	0.10	-0.2
2,813,293	-		ABIE53_006434	0.10	+0.8
2,813,293	-		ABIE53_006434	0.10	+0.6
2,813,293	-		ABIE53_006434	0.10	-0.4
2,813,293	-		ABIE53_006434	0.10	-1.4
2,813,293	-		ABIE53_006434	0.10	-1.3
2,813,293	-		ABIE53_006434	0.10	+0.2
2,813,293	-		ABIE53_006434	0.10	+0.6
2,813,293	-		ABIE53_006434	0.10	+0.8
2,813,293	-		ABIE53_006434	0.10	+0.8
2,813,293	-		ABIE53_006434	0.10	-1.7
2,813,293	-		ABIE53_006434	0.10	-1.6
2,813,293	-		ABIE53_006434	0.10	-1.5
2,813,293	-		ABIE53_006434	0.10	-1.0
2,813,293	-		ABIE53_006434	0.10	+0.6
2,813,293	-		ABIE53_006434	0.10	+0.4
2,813,293	-		ABIE53_006434	0.10	+1.2
2,813,293	-		ABIE53_006434	0.10	-0.3
2,813,293	-		ABIE53_006434	0.10	-2.9
2,813,293	-		ABIE53_006434	0.10	+0.3
2,813,364	+		ABIE53_006434	0.22	-0.8
2,813,364	+		ABIE53_006434	0.22	+1.0
2,813,364	+		ABIE53_006434	0.22	-0.2
2,813,364	+		ABIE53_006434	0.22	-0.6
2,813,365	-		ABIE53_006434	0.23	-0.2
2,813,365	-		ABIE53_006434	0.23	+1.3
2,813,397	+		ABIE53_006434	0.28	+1.2
2,813,397	+		ABIE53_006434	0.28	+1.3
2,813,398	-		ABIE53_006434	0.28	-1.0
2,813,643	+		ABIE53_006434	0.70	+1.4
2,813,643	+		ABIE53_006434	0.70	+0.1
2,813,644	-		ABIE53_006434	0.70	-2.0
2,813,699	+		ABIE53_006434	0.79	+0.2
2,813,699	+		ABIE53_006434	0.79	-1.4
2,813,699	+		ABIE53_006434	0.79	+0.6
2,813,700	-		ABIE53_006434	0.80	+2.2
2,813,790	+				+0.5
2,813,790	+				-1.6
2,813,790	+				-2.1
2,813,852	+				-0.4
2,813,874	+				+0.9
2,813,875	-				+0.2
2,813,888	+				-2.2
2,813,888	+				+1.5
2,813,888	+				-0.2
2,813,888	+				-2.5
2,813,889	-				+1.6
2,813,889	-				-1.7
2,813,911	+				-1.0
2,813,917	+				-1.5
2,813,917	+				+1.6
2,813,917	+				-0.9
2,813,917	+				+2.8
2,813,917	+				-0.2
2,813,917	+				-0.3
2,813,918	-				+0.6
2,813,918	-				-1.6
2,813,918	-				-1.1
2,813,918	-				+0.1
2,813,918	-				+0.2
2,813,918	-				-1.4
2,813,918	-				-1.6
2,813,992	+				-0.6
2,813,992	+				+0.4
2,814,056	+				-0.2
2,814,056	+				-0.8
2,814,056	+				-1.5
2,814,056	+				-2.8
2,814,056	+				-0.4
2,814,056	+				-1.4
2,814,056	+				+1.2
2,814,057	-				-1.1
2,814,057	-				+0.2
2,814,057	-				-0.4
2,814,057	-				+0.4
2,814,168	+		ABIE53_006435	0.41	-2.8
2,814,168	+		ABIE53_006435	0.41	-0.5
2,814,168	+		ABIE53_006435	0.41	-0.6
2,814,168	+		ABIE53_006435	0.41	-0.1
2,814,169	-		ABIE53_006435	0.41	-1.1
2,814,169	-		ABIE53_006435	0.41	+1.2
2,814,169	-		ABIE53_006435	0.41	-1.5
2,814,169	-		ABIE53_006435	0.41	-1.2
2,814,237	+		ABIE53_006435	0.61	-0.4
2,814,237	+		ABIE53_006435	0.61	-0.8
2,814,237	+		ABIE53_006435	0.61	+0.8
2,814,237	+		ABIE53_006435	0.61	-0.3
2,814,237	+		ABIE53_006435	0.61	-0.6
2,814,238	-		ABIE53_006435	0.61	-1.0
2,814,240	-		ABIE53_006435	0.62	-1.9
2,814,320	+		ABIE53_006435	0.84	-0.4
2,814,320	+		ABIE53_006435	0.84	-0.2
2,814,321	-		ABIE53_006435	0.85	-0.6
2,814,404	+				+0.6
2,814,411	+				+1.2
2,814,475	+				-1.5
2,814,476	-				+0.6
2,814,476	-				+0.6
2,814,476	-				+0.2
2,814,477	+				-3.5
2,814,477	+				-2.1
2,814,477	+				-0.4
2,814,478	-				-0.2
2,814,500	+				-1.0
2,814,500	+				-2.5
2,814,500	+				-3.0
2,814,501	-				-0.5
2,814,501	-				+0.9
2,814,501	-				-0.9
2,814,501	-				+1.6
2,814,527	+		ABIE53_006436	0.11	-4.1
2,814,528	-		ABIE53_006436	0.11	+0.2
2,814,528	-		ABIE53_006436	0.11	+0.9
2,814,542	+		ABIE53_006436	0.12	-2.1
2,814,542	+		ABIE53_006436	0.12	+0.6
2,814,543	-		ABIE53_006436	0.12	+0.2
2,814,543	-		ABIE53_006436	0.12	+1.6
2,814,543	-		ABIE53_006436	0.12	-0.6
2,814,569	+		ABIE53_006436	0.14	-1.6
2,814,638	-		ABIE53_006436	0.20	-0.7
2,814,645	-		ABIE53_006436	0.21	+0.9
2,814,650	+		ABIE53_006436	0.21	+0.1
2,814,650	+		ABIE53_006436	0.21	-0.8
2,814,651	-		ABIE53_006436	0.21	-0.8
2,814,651	-		ABIE53_006436	0.21	-1.5
2,814,651	-		ABIE53_006436	0.21	-0.1
2,814,686	+		ABIE53_006436	0.24	+0.4
2,814,687	-		ABIE53_006436	0.24	+0.7
2,814,734	-		ABIE53_006436	0.29	+0.2
2,814,768	-		ABIE53_006436	0.31	-0.2
2,814,768	-		ABIE53_006436	0.31	-1.5
2,814,791	+		ABIE53_006436	0.33	-1.6