Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003380

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,800,495	-		ABIE53_003378	0.68	-2.1
3,800,495	-		ABIE53_003378	0.68	-0.4
3,800,495	-		ABIE53_003378	0.68	+2.3
3,800,495	-		ABIE53_003378	0.68	+0.3
3,800,523	+		ABIE53_003378	0.74	-0.5
3,800,523	+		ABIE53_003378	0.74	-0.3
3,800,621	+				-0.5
3,800,657	+				+1.6
3,800,658	-				+0.0
3,800,679	+				+1.0
3,800,679	+				-2.0
3,800,679	+				-1.2
3,800,689	+				-1.3
3,800,690	-				-2.4
3,800,709	-				-1.0
3,800,751	+				-0.7
3,800,751	+				+0.7
3,800,751	+				-1.8
3,800,751	+				+0.5
3,800,751	+				-0.7
3,800,751	+				+0.3
3,800,751	+				-1.6
3,800,751	+				-0.4
3,800,752	-				+2.0
3,800,752	-				+0.3
3,800,752	-				-0.5
3,800,752	-				+0.2
3,800,752	-				-0.5
3,800,761	+				+1.3
3,800,763	+				-2.1
3,800,763	+				-1.0
3,800,763	+				+0.5
3,800,764	-				-0.7
3,800,764	-				+0.3
3,800,764	-				-1.1
3,800,764	-				-0.9
3,800,764	-				+0.3
3,800,931	-		ABIE53_003379	0.23	+1.4
3,800,962	-		ABIE53_003379	0.27	+0.3
3,800,962	-		ABIE53_003379	0.27	-1.0
3,800,962	-		ABIE53_003379	0.27	+1.5
3,800,962	-		ABIE53_003379	0.27	-1.0
3,801,006	+		ABIE53_003379	0.34	-1.6
3,801,007	-		ABIE53_003379	0.34	+1.6
3,801,106	+		ABIE53_003379	0.50	-1.3
3,801,107	-		ABIE53_003379	0.50	+1.0
3,801,107	-		ABIE53_003379	0.50	-0.3
3,801,107	-		ABIE53_003379	0.50	+1.2
3,801,107	-		ABIE53_003379	0.50	-2.4
3,801,117	+		ABIE53_003379	0.52	-0.7
3,801,117	+		ABIE53_003379	0.52	-0.7
3,801,117	+		ABIE53_003379	0.52	+1.6
3,801,117	+		ABIE53_003379	0.52	+0.7
3,801,118	-		ABIE53_003379	0.52	+1.3
3,801,118	-		ABIE53_003379	0.52	+0.4
3,801,118	-		ABIE53_003379	0.52	+0.3
3,801,118	-		ABIE53_003379	0.52	+2.3
3,801,118	-		ABIE53_003379	0.52	-1.7
3,801,272	+		ABIE53_003379	0.76	+0.8
3,801,272	+		ABIE53_003379	0.76	+2.4
3,801,273	-		ABIE53_003379	0.76	+0.6
3,801,273	-		ABIE53_003379	0.76	+0.0
3,801,337	-		ABIE53_003379	0.86	-1.1
3,801,337	-		ABIE53_003379	0.86	-0.8
3,801,440	+				-1.4
3,801,548	+				+0.7
3,801,548	+				+3.3
3,801,548	+				-0.6
3,801,548	+				+0.0
3,801,548	+				-0.3
3,801,549	-				-0.5
3,801,549	-				+0.0
3,801,549	-				+2.2
3,801,549	-				+0.7
3,801,552	+				+1.0
3,801,552	+				-1.1
3,801,552	+				-0.3
3,801,552	+				-1.4
3,801,552	+				-0.8
3,801,552	+				+0.0
3,801,552	+				-0.5
3,801,552	+				+1.2
3,801,552	+				-1.5
3,801,552	+				-1.4
3,801,553	-				+1.6
3,801,553	-				-0.5
3,801,553	-				-1.0
3,801,553	-				+0.1
3,801,553	-				-1.8
3,801,553	-				-0.8
3,801,553	-				+0.1
3,801,553	-				-1.5
3,801,695	+		ABIE53_003380	0.19	-1.7
3,801,695	+		ABIE53_003380	0.19	-2.1
3,801,696	-		ABIE53_003380	0.19	+1.7
3,801,696	-		ABIE53_003380	0.19	-1.1
3,801,746	+		ABIE53_003380	0.23	-1.0
3,801,747	-		ABIE53_003380	0.23	-1.7
3,801,861	+		ABIE53_003380	0.32	-1.1
3,801,861	+		ABIE53_003380	0.32	-0.8
3,801,861	+		ABIE53_003380	0.32	+1.7
3,801,861	+		ABIE53_003380	0.32	+0.1
3,801,861	+		ABIE53_003380	0.32	-2.0
3,801,861	+		ABIE53_003380	0.32	-2.4
3,801,862	-		ABIE53_003380	0.32	+2.3
3,801,862	-		ABIE53_003380	0.32	+0.7
3,801,987	+		ABIE53_003380	0.42	+0.0
3,801,988	-		ABIE53_003380	0.42	-0.3
3,801,999	+		ABIE53_003380	0.43	-1.6
3,801,999	+		ABIE53_003380	0.43	+0.9
3,801,999	+		ABIE53_003380	0.43	-1.0
3,801,999	+		ABIE53_003380	0.43	+0.5
3,802,119	+		ABIE53_003380	0.53	-1.4
3,802,119	+		ABIE53_003380	0.53	-0.4
3,802,137	+		ABIE53_003380	0.54	+0.2
3,802,137	+		ABIE53_003380	0.54	+0.7
3,802,137	+		ABIE53_003380	0.54	-2.7
3,802,137	+		ABIE53_003380	0.54	-1.4
3,802,137	+		ABIE53_003380	0.54	-0.0
3,802,137	+		ABIE53_003380	0.54	-0.4
3,802,138	-		ABIE53_003380	0.54	+1.2
3,802,138	-		ABIE53_003380	0.54	-2.6
3,802,138	-		ABIE53_003380	0.54	-2.3
3,802,138	-		ABIE53_003380	0.54	+1.7
3,802,138	-		ABIE53_003380	0.54	+0.7
3,802,138	-		ABIE53_003380	0.54	-1.6
3,802,138	-		ABIE53_003380	0.54	+1.4
3,802,138	-		ABIE53_003380	0.54	-1.9
3,802,138	-		ABIE53_003380	0.54	+0.6
3,802,138	-		ABIE53_003380	0.54	+2.3
3,802,138	-		ABIE53_003380	0.54	-0.3
3,802,138	-		ABIE53_003380	0.54	+0.7
3,802,138	-		ABIE53_003380	0.54	+1.1
3,802,138	-		ABIE53_003380	0.54	+1.7
3,802,138	-		ABIE53_003380	0.54	+2.3
3,802,138	-		ABIE53_003380	0.54	-1.6
3,802,138	-		ABIE53_003380	0.54	-1.9
3,802,138	-		ABIE53_003380	0.54	-0.4
3,802,138	-		ABIE53_003380	0.54	-0.5
3,802,143	+		ABIE53_003380	0.54	-0.6
3,802,143	+		ABIE53_003380	0.54	-1.2
3,802,143	+		ABIE53_003380	0.54	+0.1
3,802,143	+		ABIE53_003380	0.54	-0.7
3,802,143	+		ABIE53_003380	0.54	-0.4
3,802,143	+		ABIE53_003380	0.54	+1.3
3,802,143	+		ABIE53_003380	0.54	+0.8
3,802,144	-		ABIE53_003380	0.55	+0.0
3,802,144	-		ABIE53_003380	0.55	-1.0
3,802,144	-		ABIE53_003380	0.55	-2.1
3,802,144	-		ABIE53_003380	0.55	+1.5
3,802,144	-		ABIE53_003380	0.55	+1.0
3,802,202	+		ABIE53_003380	0.59	+0.7
3,802,202	+		ABIE53_003380	0.59	-0.4
3,802,203	-		ABIE53_003380	0.59	-0.9
3,802,266	+		ABIE53_003380	0.64	-0.5
3,802,266	+		ABIE53_003380	0.64	+1.9
3,802,267	-		ABIE53_003380	0.64	+0.0
3,802,267	-		ABIE53_003380	0.64	+0.7
3,802,293	+		ABIE53_003380	0.66	-0.4
3,802,294	-		ABIE53_003380	0.67	-0.5
3,802,294	-		ABIE53_003380	0.67	+0.3
3,802,412	+		ABIE53_003380	0.76	+0.7
3,802,413	-		ABIE53_003380	0.76	+0.3
3,802,413	-		ABIE53_003380	0.76	+1.7
3,802,518	+		ABIE53_003380	0.84	+0.6
3,802,518	+		ABIE53_003380	0.84	-1.1
3,802,519	-		ABIE53_003380	0.84	-0.0
3,802,519	-		ABIE53_003380	0.84	-1.6
3,802,596	-				+0.0
3,802,596	-				+0.3
3,802,605	+				+0.0
3,802,606	-				-0.8
3,802,607	+				-0.3
3,802,607	+				-0.7
3,802,624	+				-0.6
3,802,624	+				+1.9
3,802,624	+				+3.9
3,802,624	+				-0.9
3,802,624	+				+1.3
3,802,624	+				+0.3
3,802,624	+				-0.7
3,802,624	+				-1.4
3,802,624	+				-0.6
3,802,624	+				-0.3
3,802,625	-				-0.1
3,802,625	-				-1.4
3,802,625	-				-1.4
3,802,625	-				+2.3
3,802,625	-				-1.0
3,802,625	-				-0.8
3,802,625	-				+0.2
3,802,827	+		ABIE53_003381	0.11	+1.3
3,802,894	+		ABIE53_003381	0.18	-1.7
3,802,894	+		ABIE53_003381	0.18	-0.2
3,802,894	+		ABIE53_003381	0.18	-1.0
3,802,895	-		ABIE53_003381	0.18	-0.5
3,802,903	+		ABIE53_003381	0.19	-0.5
3,802,904	-		ABIE53_003381	0.19	-0.4
3,802,904	-		ABIE53_003381	0.19	+1.3
3,802,904	-		ABIE53_003381	0.19	+0.3
3,803,017	+		ABIE53_003381	0.31	-0.1
3,803,017	+		ABIE53_003381	0.31	-1.0
3,803,155	+		ABIE53_003381	0.46	+1.2
3,803,155	+		ABIE53_003381	0.46	+1.3
3,803,173	+		ABIE53_003381	0.48	-1.1
3,803,174	-		ABIE53_003381	0.48	+3.9
3,803,174	-		ABIE53_003381	0.48	-1.0
3,803,174	-		ABIE53_003381	0.48	-2.2
3,803,203	+		ABIE53_003381	0.51	-1.4
3,803,203	+		ABIE53_003381	0.51	-1.5
3,803,203	+		ABIE53_003381	0.51	-0.9
3,803,203	+		ABIE53_003381	0.51	+1.4
3,803,204	-		ABIE53_003381	0.51	+0.4
3,803,204	-		ABIE53_003381	0.51	-0.8
3,803,204	-		ABIE53_003381	0.51	-0.5
3,803,209	+		ABIE53_003381	0.51	+4.7
3,803,323	+		ABIE53_003381	0.63	-0.8
3,803,324	-		ABIE53_003381	0.64	-2.8
3,803,439	-		ABIE53_003381	0.76	-0.5
3,803,446	+		ABIE53_003381	0.77	+1.7
3,803,446	+		ABIE53_003381	0.77	-0.7
3,803,446	+		ABIE53_003381	0.77	-1.7
3,803,446	+		ABIE53_003381	0.77	+0.1
3,803,447	-		ABIE53_003381	0.77	+3.1
3,803,476	+		ABIE53_003381	0.80	-0.3
3,803,476	+		ABIE53_003381	0.80	-1.6
3,803,477	-		ABIE53_003381	0.80	-1.8
3,803,541	+		ABIE53_003381	0.87	+1.1
3,803,541	+		ABIE53_003381	0.87	+0.8
3,803,542	-		ABIE53_003381	0.87	+0.7
3,803,542	-		ABIE53_003381	0.87	-0.7
3,803,544	+		ABIE53_003381	0.87	+1.7
3,803,545	-		ABIE53_003381	0.87	+0.3
3,803,602	+				-2.1
3,803,602	+				-1.5
3,803,603	-				+0.6
3,803,665	+				-1.5
3,803,666	-				-0.7
3,803,666	-				+0.0
3,803,710	+				-1.4
3,803,711	-				-0.8