Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000421 and ABIE53_000422 are separated by 9 nucleotides ABIE53_000422 and ABIE53_000423 are separated by 263 nucleotides ABIE53_000423 and ABIE53_000424 are separated by 608 nucleotides
ABIE53_000421: ABIE53_000421 - ATP-dependent HslUV protease ATP-binding subunit HslU, at 455,829 to 457,175
_000421
ABIE53_000422: ABIE53_000422 - ATP-dependent HslUV protease subunit HslV, at 457,185 to 457,721
_000422
ABIE53_000423: ABIE53_000423 - DnaK suppressor protein, at 457,985 to 458,404
_000423
ABIE53_000424: ABIE53_000424 - G3E family GTPase, at 459,013 to 460,137
_000424
Position (kb) 457
458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 457.187 kb on - strand at 457.187 kb on - strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.223 kb on - strand at 457.223 kb on - strand at 457.223 kb on - strand at 457.322 kb on - strand, within ABIE53_000422 at 457.322 kb on - strand, within ABIE53_000422 at 457.591 kb on + strand, within ABIE53_000422 at 457.591 kb on + strand, within ABIE53_000422 at 457.591 kb on + strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.721 kb on + strand at 457.721 kb on + strand at 457.721 kb on + strand at 457.721 kb on + strand at 457.721 kb on + strand at 457.721 kb on + strand at 457.721 kb on + strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.746 kb on + strand at 457.850 kb on + strand at 457.850 kb on + strand at 457.851 kb on - strand at 457.851 kb on - strand at 457.851 kb on - strand at 457.855 kb on + strand at 457.872 kb on + strand at 457.872 kb on + strand at 457.872 kb on + strand at 457.872 kb on + strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.894 kb on + strand at 457.894 kb on + strand at 457.895 kb on - strand at 457.895 kb on - strand at 458.240 kb on + strand, within ABIE53_000423 at 458.241 kb on - strand, within ABIE53_000423 at 458.241 kb on - strand, within ABIE53_000423 at 458.347 kb on - strand, within ABIE53_000423 at 458.347 kb on - strand, within ABIE53_000423 at 458.347 kb on - strand, within ABIE53_000423 at 458.412 kb on - strand at 458.412 kb on - strand at 458.412 kb on - strand at 458.412 kb on - strand at 458.412 kb on - strand at 458.412 kb on - strand at 458.412 kb on - strand at 458.412 kb on - strand at 458.412 kb on - strand at 458.412 kb on - strand at 458.412 kb on - strand at 458.438 kb on + strand at 458.438 kb on + strand at 458.439 kb on - strand at 458.439 kb on - strand at 458.439 kb on - strand at 458.439 kb on - strand at 458.439 kb on - strand at 458.439 kb on - strand at 458.439 kb on - strand at 458.439 kb on - strand at 458.442 kb on + strand at 458.442 kb on + strand at 458.442 kb on + strand at 458.442 kb on + strand at 458.442 kb on + strand at 458.443 kb on - strand at 458.443 kb on - strand at 458.443 kb on - strand at 458.443 kb on - strand at 458.443 kb on - strand at 458.443 kb on - strand at 458.443 kb on - strand at 458.443 kb on - strand at 458.460 kb on - strand at 458.610 kb on + strand at 458.610 kb on + strand at 458.610 kb on + strand at 458.611 kb on - strand at 458.611 kb on - strand at 458.611 kb on - strand at 458.611 kb on - strand at 458.655 kb on - strand at 458.695 kb on + strand at 458.695 kb on + strand at 458.696 kb on - strand at 458.696 kb on - strand at 458.723 kb on + strand at 458.723 kb on + strand at 458.724 kb on - strand at 458.724 kb on - strand at 458.724 kb on - strand at 458.724 kb on - strand at 458.724 kb on - strand at 458.724 kb on - strand at 458.724 kb on - strand at 458.724 kb on - strand at 458.724 kb on - strand at 458.727 kb on + strand at 458.727 kb on + strand at 458.727 kb on + strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.728 kb on - strand at 458.778 kb on + strand at 458.778 kb on + strand at 458.778 kb on + strand at 458.778 kb on + strand at 458.779 kb on - strand at 458.779 kb on - strand at 458.779 kb on - strand at 458.779 kb on - strand at 458.779 kb on - strand at 458.779 kb on - strand at 458.779 kb on - strand at 458.779 kb on - strand at 458.783 kb on + strand at 458.783 kb on + strand at 458.783 kb on + strand at 458.783 kb on + strand at 458.783 kb on + strand at 458.784 kb on - strand at 458.784 kb on - strand at 458.784 kb on - strand at 458.839 kb on + strand at 458.840 kb on - strand at 458.850 kb on + strand at 458.850 kb on + strand at 458.851 kb on - strand at 458.851 kb on - strand at 458.853 kb on - strand at 458.892 kb on + strand at 458.892 kb on + strand at 458.892 kb on + strand at 458.893 kb on - strand at 458.893 kb on - strand at 458.895 kb on + strand at 458.895 kb on + strand at 458.895 kb on + strand at 458.895 kb on + strand at 458.896 kb on - strand at 458.896 kb on - strand at 458.896 kb on - strand at 458.896 kb on - strand at 458.896 kb on - strand at 458.896 kb on - strand at 458.896 kb on - strand at 458.922 kb on + strand at 458.922 kb on + strand at 458.922 kb on + strand at 458.922 kb on + strand at 458.923 kb on - strand at 458.923 kb on - strand at 458.923 kb on - strand at 458.923 kb on - strand at 458.923 kb on - strand at 458.923 kb on - strand at 458.976 kb on + strand at 458.977 kb on - strand at 458.977 kb on - strand at 458.977 kb on - strand at 458.990 kb on + strand at 458.991 kb on - strand at 459.073 kb on - strand at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.185 kb on + strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.186 kb on - strand, within ABIE53_000424 at 459.187 kb on - strand, within ABIE53_000424 at 459.200 kb on + strand, within ABIE53_000424 at 459.200 kb on + strand, within ABIE53_000424 at 459.200 kb on + strand, within ABIE53_000424 at 459.200 kb on + strand, within ABIE53_000424 at 459.200 kb on + strand, within ABIE53_000424 at 459.201 kb on - strand, within ABIE53_000424 at 459.201 kb on - strand, within ABIE53_000424 at 459.201 kb on - strand, within ABIE53_000424 at 459.221 kb on + strand, within ABIE53_000424 at 459.221 kb on + strand, within ABIE53_000424 at 459.222 kb on - strand, within ABIE53_000424 at 459.222 kb on - strand, within ABIE53_000424 at 459.287 kb on + strand, within ABIE53_000424
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 457,187 - +0.2 457,187 - -1.7 457,222 + -0.6 457,222 + -1.5 457,222 + -0.7 457,222 + -1.1 457,222 + +0.8 457,222 + -0.6 457,222 + +0.1 457,223 - -0.2 457,223 - +0.5 457,223 - -1.6 457,322 - ABIE53_000422 0.26 +0.1 457,322 - ABIE53_000422 0.26 +1.1 457,591 + ABIE53_000422 0.76 +0.8 457,591 + ABIE53_000422 0.76 +0.1 457,591 + ABIE53_000422 0.76 -1.5 457,592 - ABIE53_000422 0.76 -1.2 457,592 - ABIE53_000422 0.76 -0.3 457,592 - ABIE53_000422 0.76 -1.7 457,592 - ABIE53_000422 0.76 +0.4 457,592 - ABIE53_000422 0.76 -0.4 457,592 - ABIE53_000422 0.76 -1.3 457,721 + -0.0 457,721 + +1.7 457,721 + +0.5 457,721 + +1.7 457,721 + +0.2 457,721 + -1.2 457,721 + -0.9 457,722 - +2.3 457,722 - +0.5 457,722 - -0.1 457,722 - +0.9 457,722 - +0.8 457,722 - -0.9 457,722 - -1.2 457,722 - -1.7 457,722 - +2.6 457,722 - +1.4 457,746 + -3.5 457,850 + +0.6 457,850 + -1.6 457,851 - +0.5 457,851 - -0.8 457,851 - +0.1 457,855 + +0.4 457,872 + -3.6 457,872 + +4.9 457,872 + +0.4 457,872 + -1.1 457,873 - +0.8 457,873 - +1.8 457,873 - +1.4 457,873 - +0.1 457,873 - +2.6 457,873 - -1.1 457,894 + -0.4 457,894 + +1.7 457,895 - +2.4 457,895 - -0.5 458,240 + ABIE53_000423 0.61 -1.1 458,241 - ABIE53_000423 0.61 -3.0 458,241 - ABIE53_000423 0.61 -3.2 458,347 - ABIE53_000423 0.86 -3.0 458,347 - ABIE53_000423 0.86 -0.8 458,347 - ABIE53_000423 0.86 -3.2 458,412 - +2.4 458,412 - -2.8 458,412 - -1.2 458,412 - -0.3 458,412 - -3.0 458,412 - -1.7 458,412 - -0.3 458,412 - +0.1 458,412 - -1.4 458,412 - +0.7 458,412 - +0.1 458,438 + -1.4 458,438 + -1.4 458,439 - +1.2 458,439 - -0.5 458,439 - +0.0 458,439 - -1.2 458,439 - +0.3 458,439 - +2.4 458,439 - +0.9 458,439 - -1.7 458,442 + -1.3 458,442 + -1.9 458,442 + -2.6 458,442 + -1.2 458,442 + +0.1 458,443 - -1.7 458,443 - -0.8 458,443 - +0.7 458,443 - -0.9 458,443 - -0.3 458,443 - +0.1 458,443 - -1.3 458,443 - -0.9 458,460 - -0.3 458,610 + -2.0 458,610 + -2.2 458,610 + -1.4 458,611 - -1.7 458,611 - +1.0 458,611 - -0.4 458,611 - -1.2 458,655 - -1.2 458,695 + +0.4 458,695 + -1.7 458,696 - -2.4 458,696 - +0.8 458,723 + -1.5 458,723 + +2.4 458,724 - -0.2 458,724 - +0.4 458,724 - +0.1 458,724 - +1.5 458,724 - -0.5 458,724 - -1.4 458,724 - +1.2 458,724 - +0.8 458,724 - +1.4 458,727 + -2.2 458,727 + -0.4 458,727 + +0.8 458,728 - -0.9 458,728 - -1.1 458,728 - +0.8 458,728 - -0.2 458,728 - -0.4 458,728 - -2.5 458,728 - +0.8 458,728 - +1.4 458,728 - +0.8 458,728 - +1.1 458,728 - -1.1 458,728 - -0.6 458,728 - +0.3 458,728 - -0.2 458,728 - -1.8 458,778 + -1.9 458,778 + -0.9 458,778 + -2.7 458,778 + -2.5 458,779 - +3.2 458,779 - -0.5 458,779 - -1.3 458,779 - +0.3 458,779 - +0.1 458,779 - -0.3 458,779 - -2.5 458,779 - +0.8 458,783 + -2.3 458,783 + -0.8 458,783 + -1.4 458,783 + +5.2 458,783 + -0.6 458,784 - -1.2 458,784 - -0.9 458,784 - +10.5 458,839 + -1.4 458,840 - -1.4 458,850 + +0.5 458,850 + -0.9 458,851 - +1.1 458,851 - +2.4 458,853 - -1.6 458,892 + -0.0 458,892 + +0.6 458,892 + +0.1 458,893 - -1.3 458,893 - -0.3 458,895 + -0.8 458,895 + -1.6 458,895 + +0.8 458,895 + -1.5 458,896 - +0.6 458,896 - -0.3 458,896 - -2.5 458,896 - +0.1 458,896 - +1.0 458,896 - +0.2 458,896 - +2.4 458,922 + -2.0 458,922 + -1.5 458,922 + +3.0 458,922 + -0.1 458,923 - +4.8 458,923 - +1.4 458,923 - +0.8 458,923 - +0.2 458,923 - -0.5 458,923 - -0.1 458,976 + +0.6 458,977 - -0.9 458,977 - +0.4 458,977 - -1.1 458,990 + -0.7 458,991 - +1.8 459,073 - -0.4 459,185 + ABIE53_000424 0.15 +1.1 459,185 + ABIE53_000424 0.15 -1.1 459,185 + ABIE53_000424 0.15 +0.1 459,185 + ABIE53_000424 0.15 +0.4 459,185 + ABIE53_000424 0.15 +0.4 459,185 + ABIE53_000424 0.15 +2.1 459,185 + ABIE53_000424 0.15 +0.2 459,185 + ABIE53_000424 0.15 -0.3 459,185 + ABIE53_000424 0.15 -0.2 459,185 + ABIE53_000424 0.15 -0.1 459,185 + ABIE53_000424 0.15 +1.0 459,185 + ABIE53_000424 0.15 -0.6 459,185 + ABIE53_000424 0.15 +0.4 459,185 + ABIE53_000424 0.15 +2.7 459,185 + ABIE53_000424 0.15 +0.1 459,185 + ABIE53_000424 0.15 +0.6 459,185 + ABIE53_000424 0.15 -2.3 459,185 + ABIE53_000424 0.15 -1.2 459,186 - ABIE53_000424 0.15 +1.4 459,186 - ABIE53_000424 0.15 +0.3 459,186 - ABIE53_000424 0.15 +0.6 459,186 - ABIE53_000424 0.15 +0.5 459,186 - ABIE53_000424 0.15 -0.1 459,186 - ABIE53_000424 0.15 +0.3 459,186 - ABIE53_000424 0.15 -1.1 459,186 - ABIE53_000424 0.15 -0.2 459,186 - ABIE53_000424 0.15 +1.0 459,186 - ABIE53_000424 0.15 +1.7 459,186 - ABIE53_000424 0.15 -0.4 459,186 - ABIE53_000424 0.15 +0.6 459,186 - ABIE53_000424 0.15 -0.4 459,186 - ABIE53_000424 0.15 +0.1 459,186 - ABIE53_000424 0.15 +0.3 459,186 - ABIE53_000424 0.15 -0.4 459,187 - ABIE53_000424 0.15 +0.1 459,200 + ABIE53_000424 0.17 -1.5 459,200 + ABIE53_000424 0.17 +0.4 459,200 + ABIE53_000424 0.17 +0.2 459,200 + ABIE53_000424 0.17 +0.4 459,200 + ABIE53_000424 0.17 +1.4 459,201 - ABIE53_000424 0.17 -0.1 459,201 - ABIE53_000424 0.17 +0.1 459,201 - ABIE53_000424 0.17 -0.4 459,221 + ABIE53_000424 0.18 +0.8 459,221 + ABIE53_000424 0.18 -0.8 459,222 - ABIE53_000424 0.19 -0.7 459,222 - ABIE53_000424 0.19 -0.9 459,287 + ABIE53_000424 0.24 +2.2
Or see this region's nucleotide sequence