Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS00180

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS00170 and RALBFv3_RS00175 are separated by 105 nucleotidesRALBFv3_RS00175 and RALBFv3_RS00180 are separated by 84 nucleotidesRALBFv3_RS00180 and RALBFv3_RS00185 are separated by 152 nucleotidesRALBFv3_RS00185 and RALBFv3_RS00190 overlap by 4 nucleotides RALBFv3_RS00170: RALBFv3_RS00170 - malate synthase A, at 36,721 to 38,301 _RS00170 RALBFv3_RS00175: RALBFv3_RS00175 - DUF1857 domain-containing protein, at 38,407 to 38,877 _RS00175 RALBFv3_RS00180: RALBFv3_RS00180 - acyl-CoA-binding protein, at 38,962 to 39,231 _RS00180 RALBFv3_RS00185: RALBFv3_RS00185 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 39,384 to 40,115 _RS00185 RALBFv3_RS00190: RALBFv3_RS00190 - ribosomal-protein-alanine N-acetyltransferase, at 40,112 to 40,639 _RS00190 Position (kb) 38 39 40Strain fitness (log2 ratio) -1 0 1 2at 38.379 kb on + strandat 38.380 kb on - strandat 38.647 kb on + strand, within RALBFv3_RS00175at 38.647 kb on + strand, within RALBFv3_RS00175at 39.006 kb on - strand, within RALBFv3_RS00180at 39.059 kb on + strand, within RALBFv3_RS00180at 39.059 kb on + strand, within RALBFv3_RS00180

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
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38,379 + -1.0
38,380 - -0.6
38,647 + RALBFv3_RS00175 0.51 +1.9
38,647 + RALBFv3_RS00175 0.51 -0.1
39,006 - RALBFv3_RS00180 0.16 +0.3
39,059 + RALBFv3_RS00180 0.36 +0.9
39,059 + RALBFv3_RS00180 0.36 -0.2

Or see this region's nucleotide sequence