Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_721 and Pf6N2E2_722 are separated by 11 nucleotides Pf6N2E2_722 and Pf6N2E2_723 overlap by 7 nucleotides Pf6N2E2_723 and Pf6N2E2_724 are separated by 464 nucleotides
Pf6N2E2_721 - FIG139552: Putative protease, at 825,010 to 826,005
_721
Pf6N2E2_722 - FIG139928: Putative protease, at 826,017 to 826,907
_722
Pf6N2E2_723 - FIG138517: Putative lipid carrier protein, at 826,901 to 827,371
_723
Pf6N2E2_724 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 827,836 to 828,513
_724
Position (kb) 826
827 Strain fitness (log2 ratio) -2
-1
0
1
2 at 825.082 kb on + strand at 825.082 kb on + strand at 825.082 kb on + strand at 825.082 kb on + strand at 825.082 kb on + strand at 825.082 kb on + strand at 825.082 kb on + strand at 825.083 kb on - strand at 825.083 kb on - strand at 825.193 kb on + strand, within Pf6N2E2_721 at 825.193 kb on + strand, within Pf6N2E2_721 at 825.193 kb on + strand, within Pf6N2E2_721 at 825.207 kb on + strand, within Pf6N2E2_721 at 825.208 kb on - strand, within Pf6N2E2_721 at 825.208 kb on - strand, within Pf6N2E2_721 at 825.357 kb on - strand, within Pf6N2E2_721 at 825.550 kb on + strand, within Pf6N2E2_721 at 825.550 kb on + strand, within Pf6N2E2_721 at 825.551 kb on - strand, within Pf6N2E2_721 at 825.551 kb on - strand, within Pf6N2E2_721 at 825.551 kb on - strand, within Pf6N2E2_721 at 825.551 kb on - strand, within Pf6N2E2_721 at 825.668 kb on - strand, within Pf6N2E2_721 at 825.847 kb on + strand, within Pf6N2E2_721 at 825.847 kb on + strand, within Pf6N2E2_721 at 825.847 kb on + strand, within Pf6N2E2_721 at 825.848 kb on - strand, within Pf6N2E2_721 at 825.848 kb on - strand, within Pf6N2E2_721 at 825.986 kb on - strand at 825.986 kb on - strand at 826.288 kb on + strand, within Pf6N2E2_722 at 826.289 kb on - strand, within Pf6N2E2_722 at 826.375 kb on - strand, within Pf6N2E2_722 at 826.399 kb on + strand, within Pf6N2E2_722 at 826.399 kb on + strand, within Pf6N2E2_722 at 826.399 kb on + strand, within Pf6N2E2_722 at 826.400 kb on - strand, within Pf6N2E2_722 at 826.465 kb on + strand, within Pf6N2E2_722 at 826.465 kb on + strand, within Pf6N2E2_722 at 826.465 kb on + strand, within Pf6N2E2_722 at 826.466 kb on - strand, within Pf6N2E2_722 at 826.717 kb on - strand, within Pf6N2E2_722 at 826.717 kb on - strand, within Pf6N2E2_722 at 826.717 kb on - strand, within Pf6N2E2_722 at 826.717 kb on - strand, within Pf6N2E2_722 at 826.717 kb on - strand, within Pf6N2E2_722 at 826.886 kb on - strand at 826.886 kb on - strand at 827.102 kb on + strand, within Pf6N2E2_723 at 827.103 kb on - strand, within Pf6N2E2_723 at 827.310 kb on + strand, within Pf6N2E2_723 at 827.311 kb on - strand, within Pf6N2E2_723 at 827.401 kb on + strand at 827.401 kb on + strand at 827.402 kb on - strand at 827.402 kb on - strand at 827.604 kb on + strand at 827.604 kb on + strand at 827.613 kb on + strand at 827.613 kb on + strand at 827.613 kb on + strand at 827.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 825,082 + +0.4 825,082 + -2.1 825,082 + -0.9 825,082 + +1.5 825,082 + +0.5 825,082 + +1.3 825,082 + +1.0 825,083 - -0.1 825,083 - +0.1 825,193 + Pf6N2E2_721 0.18 -1.6 825,193 + Pf6N2E2_721 0.18 +0.1 825,193 + Pf6N2E2_721 0.18 +0.9 825,207 + Pf6N2E2_721 0.20 -0.1 825,208 - Pf6N2E2_721 0.20 +0.2 825,208 - Pf6N2E2_721 0.20 +1.0 825,357 - Pf6N2E2_721 0.35 +0.9 825,550 + Pf6N2E2_721 0.54 -1.9 825,550 + Pf6N2E2_721 0.54 +0.4 825,551 - Pf6N2E2_721 0.54 -0.1 825,551 - Pf6N2E2_721 0.54 +1.2 825,551 - Pf6N2E2_721 0.54 -0.8 825,551 - Pf6N2E2_721 0.54 +0.9 825,668 - Pf6N2E2_721 0.66 -0.3 825,847 + Pf6N2E2_721 0.84 +0.9 825,847 + Pf6N2E2_721 0.84 +0.4 825,847 + Pf6N2E2_721 0.84 -0.2 825,848 - Pf6N2E2_721 0.84 -1.5 825,848 - Pf6N2E2_721 0.84 -0.2 825,986 - +0.6 825,986 - +0.4 826,288 + Pf6N2E2_722 0.30 +1.8 826,289 - Pf6N2E2_722 0.31 +1.0 826,375 - Pf6N2E2_722 0.40 +1.4 826,399 + Pf6N2E2_722 0.43 +1.0 826,399 + Pf6N2E2_722 0.43 +1.9 826,399 + Pf6N2E2_722 0.43 +1.4 826,400 - Pf6N2E2_722 0.43 -0.6 826,465 + Pf6N2E2_722 0.50 -0.1 826,465 + Pf6N2E2_722 0.50 -1.1 826,465 + Pf6N2E2_722 0.50 +2.0 826,466 - Pf6N2E2_722 0.50 +1.0 826,717 - Pf6N2E2_722 0.79 -0.6 826,717 - Pf6N2E2_722 0.79 -1.0 826,717 - Pf6N2E2_722 0.79 +2.7 826,717 - Pf6N2E2_722 0.79 +0.6 826,717 - Pf6N2E2_722 0.79 +1.4 826,886 - +0.9 826,886 - -1.7 827,102 + Pf6N2E2_723 0.43 +0.6 827,103 - Pf6N2E2_723 0.43 -2.1 827,310 + Pf6N2E2_723 0.87 -0.4 827,311 - Pf6N2E2_723 0.87 +0.3 827,401 + +0.1 827,401 + -0.3 827,402 - -0.1 827,402 - -1.9 827,604 + +0.3 827,604 + +0.5 827,613 + +1.5 827,613 + +1.0 827,613 + +1.2 827,614 - -1.6
Or see this region's nucleotide sequence