Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1444

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1443 and Pf6N2E2_1444 are separated by 92 nucleotidesPf6N2E2_1444 and Pf6N2E2_1445 are separated by 133 nucleotidesPf6N2E2_1445 and Pf6N2E2_1446 are separated by 238 nucleotides Pf6N2E2_1443 - putative aldo/keto reductase, at 1,693,084 to 1,694,091 _1443 Pf6N2E2_1444 - Transcriptional regulator, LysR family, at 1,694,184 to 1,695,086 _1444 Pf6N2E2_1445 - Glutathione S-transferase, at 1,695,220 to 1,695,831 _1445 Pf6N2E2_1446 - Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10), at 1,696,070 to 1,696,822 _1446 Position (kb) 1694 1695 1696Strain fitness (log2 ratio) -2 -1 0 1 2at 1693.452 kb on - strand, within Pf6N2E2_1443at 1693.452 kb on - strand, within Pf6N2E2_1443at 1693.527 kb on - strand, within Pf6N2E2_1443at 1693.573 kb on - strand, within Pf6N2E2_1443at 1693.911 kb on - strand, within Pf6N2E2_1443at 1693.911 kb on - strand, within Pf6N2E2_1443at 1693.955 kb on + strand, within Pf6N2E2_1443at 1693.955 kb on + strand, within Pf6N2E2_1443at 1693.955 kb on + strand, within Pf6N2E2_1443at 1694.091 kb on + strandat 1694.092 kb on - strandat 1694.386 kb on + strand, within Pf6N2E2_1444at 1694.706 kb on + strand, within Pf6N2E2_1444at 1694.706 kb on + strand, within Pf6N2E2_1444at 1694.707 kb on - strand, within Pf6N2E2_1444at 1694.805 kb on + strand, within Pf6N2E2_1444at 1694.805 kb on + strand, within Pf6N2E2_1444at 1694.806 kb on - strand, within Pf6N2E2_1444at 1695.006 kb on + strandat 1695.007 kb on - strandat 1695.007 kb on - strandat 1695.009 kb on + strandat 1695.010 kb on - strandat 1695.133 kb on + strandat 1695.133 kb on + strandat 1695.133 kb on + strandat 1695.134 kb on - strandat 1695.417 kb on - strand, within Pf6N2E2_1445at 1695.470 kb on - strand, within Pf6N2E2_1445at 1695.617 kb on - strand, within Pf6N2E2_1445at 1695.691 kb on + strand, within Pf6N2E2_1445at 1695.785 kb on - strandat 1695.796 kb on + strandat 1695.796 kb on + strandat 1695.797 kb on - strandat 1695.847 kb on + strandat 1695.860 kb on - strandat 1695.871 kb on + strandat 1695.879 kb on + strandat 1695.879 kb on + strandat 1695.879 kb on + strandat 1695.880 kb on - strandat 1695.898 kb on + strandat 1695.916 kb on + strandat 1695.916 kb on + strandat 1695.916 kb on + strandat 1695.916 kb on + strandat 1695.916 kb on + strandat 1695.917 kb on - strandat 1695.920 kb on - strandat 1695.920 kb on - strandat 1695.991 kb on - strandat 1695.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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1,693,452 - Pf6N2E2_1443 0.37 +1.3
1,693,452 - Pf6N2E2_1443 0.37 -1.0
1,693,527 - Pf6N2E2_1443 0.44 +1.6
1,693,573 - Pf6N2E2_1443 0.49 +0.3
1,693,911 - Pf6N2E2_1443 0.82 -0.8
1,693,911 - Pf6N2E2_1443 0.82 -0.6
1,693,955 + Pf6N2E2_1443 0.86 +2.4
1,693,955 + Pf6N2E2_1443 0.86 -1.4
1,693,955 + Pf6N2E2_1443 0.86 -1.0
1,694,091 + -0.7
1,694,092 - -1.3
1,694,386 + Pf6N2E2_1444 0.22 -0.7
1,694,706 + Pf6N2E2_1444 0.58 -1.7
1,694,706 + Pf6N2E2_1444 0.58 +0.3
1,694,707 - Pf6N2E2_1444 0.58 -0.3
1,694,805 + Pf6N2E2_1444 0.69 -0.7
1,694,805 + Pf6N2E2_1444 0.69 -2.5
1,694,806 - Pf6N2E2_1444 0.69 -2.1
1,695,006 + +0.9
1,695,007 - -1.5
1,695,007 - -0.6
1,695,009 + +0.8
1,695,010 - -0.7
1,695,133 + +0.6
1,695,133 + +1.1
1,695,133 + -0.3
1,695,134 - +1.1
1,695,417 - Pf6N2E2_1445 0.32 +0.3
1,695,470 - Pf6N2E2_1445 0.41 -0.7
1,695,617 - Pf6N2E2_1445 0.65 +0.3
1,695,691 + Pf6N2E2_1445 0.77 +0.5
1,695,785 - +0.3
1,695,796 + -0.7
1,695,796 + -0.7
1,695,797 - +0.5
1,695,847 + -0.3
1,695,860 - +0.0
1,695,871 + -1.3
1,695,879 + +0.3
1,695,879 + -0.4
1,695,879 + +1.1
1,695,880 - -1.0
1,695,898 + -0.4
1,695,916 + -2.5
1,695,916 + -0.2
1,695,916 + +1.3
1,695,916 + +0.3
1,695,916 + -2.3
1,695,917 - -0.7
1,695,920 - -0.7
1,695,920 - -0.7
1,695,991 - +0.3
1,695,991 - +1.4

Or see this region's nucleotide sequence