Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24215 and BPHYT_RS24220 overlap by 26 nucleotides BPHYT_RS24220 and BPHYT_RS24225 overlap by 4 nucleotides BPHYT_RS24225 and BPHYT_RS24230 are separated by 82 nucleotides
BPHYT_RS24215: BPHYT_RS24215 - transcriptional regulator, at 999,266 to 999,820
_RS24215
BPHYT_RS24220: BPHYT_RS24220 - alpha/beta hydrolase, at 999,795 to 1,000,760
_RS24220
BPHYT_RS24225: BPHYT_RS24225 - hypothetical protein, at 1,000,757 to 1,001,638
_RS24225
BPHYT_RS24230: BPHYT_RS24230 - acetoin dehydrogenase, at 1,001,721 to 1,002,629
_RS24230
Position (kb) 1000
1001
1002 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 999.998 kb on - strand, within BPHYT_RS24220 at 1000.585 kb on - strand, within BPHYT_RS24220 at 1000.708 kb on + strand at 1000.956 kb on + strand, within BPHYT_RS24225 at 1000.962 kb on + strand, within BPHYT_RS24225 at 1001.035 kb on - strand, within BPHYT_RS24225 at 1001.097 kb on + strand, within BPHYT_RS24225 at 1001.132 kb on + strand, within BPHYT_RS24225 at 1001.263 kb on - strand, within BPHYT_RS24225 at 1001.395 kb on - strand, within BPHYT_RS24225 at 1001.395 kb on - strand, within BPHYT_RS24225 at 1001.691 kb on - strand at 1001.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 999,998 - BPHYT_RS24220 0.21 -3.0 1,000,585 - BPHYT_RS24220 0.82 +0.2 1,000,708 + +3.3 1,000,956 + BPHYT_RS24225 0.23 +0.9 1,000,962 + BPHYT_RS24225 0.23 -1.0 1,001,035 - BPHYT_RS24225 0.32 -0.7 1,001,097 + BPHYT_RS24225 0.39 -0.2 1,001,132 + BPHYT_RS24225 0.43 +0.3 1,001,263 - BPHYT_RS24225 0.57 +0.1 1,001,395 - BPHYT_RS24225 0.72 -1.4 1,001,395 - BPHYT_RS24225 0.72 +0.4 1,001,691 - -0.6 1,001,691 - +0.4
Or see this region's nucleotide sequence