Experiment: RCH2 defined with Cobalt chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_457 and Pf6N2E2_458 are separated by 299 nucleotides Pf6N2E2_458 and Pf6N2E2_459 are separated by 174 nucleotides
Pf6N2E2_457 - hypothetical protein, at 520,626 to 521,573
_457
Pf6N2E2_458 - Protein rarD, at 521,873 to 522,757
_458
Pf6N2E2_459 - Oxidoreductase, aldo/keto reductase family, at 522,932 to 523,945
_459
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 521.774 kb on + strand at 521.774 kb on + strand at 521.774 kb on + strand at 521.774 kb on + strand at 521.774 kb on + strand at 521.774 kb on + strand at 521.774 kb on + strand at 521.774 kb on + strand at 521.774 kb on + strand at 521.774 kb on + strand at 521.774 kb on + strand at 521.811 kb on + strand at 521.812 kb on - strand at 521.812 kb on - strand at 521.874 kb on + strand at 521.874 kb on + strand at 521.874 kb on + strand at 521.874 kb on + strand at 521.875 kb on - strand at 521.875 kb on - strand at 521.952 kb on + strand at 521.952 kb on + strand at 521.952 kb on + strand at 521.952 kb on + strand at 521.953 kb on - strand at 521.953 kb on - strand at 521.953 kb on - strand at 522.027 kb on + strand, within Pf6N2E2_458 at 522.027 kb on + strand, within Pf6N2E2_458 at 522.027 kb on + strand, within Pf6N2E2_458 at 522.028 kb on - strand, within Pf6N2E2_458 at 522.028 kb on - strand, within Pf6N2E2_458 at 522.028 kb on - strand, within Pf6N2E2_458 at 522.028 kb on - strand, within Pf6N2E2_458 at 522.078 kb on + strand, within Pf6N2E2_458 at 522.079 kb on - strand, within Pf6N2E2_458 at 522.079 kb on - strand, within Pf6N2E2_458 at 522.142 kb on - strand, within Pf6N2E2_458 at 522.270 kb on + strand, within Pf6N2E2_458 at 522.270 kb on + strand, within Pf6N2E2_458 at 522.271 kb on - strand, within Pf6N2E2_458 at 522.271 kb on - strand, within Pf6N2E2_458 at 522.271 kb on - strand, within Pf6N2E2_458 at 522.271 kb on - strand, within Pf6N2E2_458 at 522.328 kb on - strand, within Pf6N2E2_458 at 522.328 kb on - strand, within Pf6N2E2_458 at 522.381 kb on + strand, within Pf6N2E2_458 at 522.382 kb on - strand, within Pf6N2E2_458 at 522.382 kb on - strand, within Pf6N2E2_458 at 522.400 kb on - strand, within Pf6N2E2_458 at 522.400 kb on - strand, within Pf6N2E2_458 at 522.400 kb on - strand, within Pf6N2E2_458 at 522.468 kb on + strand, within Pf6N2E2_458 at 522.469 kb on - strand, within Pf6N2E2_458 at 522.530 kb on + strand, within Pf6N2E2_458 at 522.531 kb on - strand, within Pf6N2E2_458 at 522.696 kb on + strand at 522.696 kb on + strand at 522.696 kb on + strand at 522.696 kb on + strand at 522.696 kb on + strand at 522.696 kb on + strand at 522.696 kb on + strand at 522.696 kb on + strand at 522.697 kb on - strand at 522.697 kb on - strand at 522.697 kb on - strand at 522.697 kb on - strand at 522.697 kb on - strand at 522.697 kb on - strand at 522.699 kb on + strand at 522.699 kb on + strand at 522.699 kb on + strand at 522.699 kb on + strand at 522.700 kb on - strand at 522.702 kb on + strand at 522.702 kb on + strand at 522.702 kb on + strand at 522.702 kb on + strand at 522.703 kb on - strand at 522.703 kb on - strand at 522.703 kb on - strand at 522.703 kb on - strand at 522.703 kb on - strand at 522.761 kb on + strand at 522.762 kb on - strand at 522.762 kb on - strand at 522.782 kb on + strand at 522.782 kb on + strand at 522.783 kb on - strand at 522.783 kb on - strand at 522.783 kb on - strand at 522.807 kb on + strand at 522.807 kb on + strand at 522.895 kb on + strand at 522.933 kb on + strand at 522.933 kb on + strand at 522.933 kb on + strand at 522.934 kb on - strand at 522.934 kb on - strand at 522.934 kb on - strand at 523.072 kb on - strand, within Pf6N2E2_459 at 523.072 kb on - strand, within Pf6N2E2_459 at 523.185 kb on + strand, within Pf6N2E2_459 at 523.185 kb on + strand, within Pf6N2E2_459 at 523.356 kb on + strand, within Pf6N2E2_459 at 523.356 kb on + strand, within Pf6N2E2_459 at 523.357 kb on - strand, within Pf6N2E2_459 at 523.357 kb on - strand, within Pf6N2E2_459 at 523.357 kb on - strand, within Pf6N2E2_459 at 523.411 kb on - strand, within Pf6N2E2_459 at 523.411 kb on - strand, within Pf6N2E2_459 at 523.411 kb on - strand, within Pf6N2E2_459 at 523.411 kb on - strand, within Pf6N2E2_459 at 523.411 kb on - strand, within Pf6N2E2_459 at 523.492 kb on - strand, within Pf6N2E2_459 at 523.593 kb on + strand, within Pf6N2E2_459 at 523.593 kb on + strand, within Pf6N2E2_459 at 523.594 kb on - strand, within Pf6N2E2_459 at 523.594 kb on - strand, within Pf6N2E2_459 at 523.594 kb on - strand at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.596 kb on + strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.597 kb on - strand, within Pf6N2E2_459 at 523.608 kb on + strand, within Pf6N2E2_459 at 523.652 kb on + strand, within Pf6N2E2_459 at 523.652 kb on + strand, within Pf6N2E2_459 at 523.652 kb on + strand, within Pf6N2E2_459 at 523.652 kb on + strand, within Pf6N2E2_459 at 523.652 kb on + strand, within Pf6N2E2_459 at 523.653 kb on - strand, within Pf6N2E2_459
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Cobalt chloride 0.04 mM remove 521,774 + +0.6 521,774 + +1.3 521,774 + -0.6 521,774 + -0.8 521,774 + +0.5 521,774 + +0.4 521,774 + +0.1 521,774 + +0.9 521,774 + +0.3 521,774 + +1.6 521,774 + +1.1 521,811 + -0.7 521,812 - -0.4 521,812 - -1.3 521,874 + +1.8 521,874 + +0.9 521,874 + +2.5 521,874 + +1.4 521,875 - -0.7 521,875 - +2.3 521,952 + -1.6 521,952 + +2.7 521,952 + +3.1 521,952 + -1.6 521,953 - +5.6 521,953 - +3.8 521,953 - +2.9 522,027 + Pf6N2E2_458 0.17 +3.8 522,027 + Pf6N2E2_458 0.17 +1.6 522,027 + Pf6N2E2_458 0.17 +0.2 522,028 - Pf6N2E2_458 0.18 +4.0 522,028 - Pf6N2E2_458 0.18 +0.7 522,028 - Pf6N2E2_458 0.18 +3.2 522,028 - Pf6N2E2_458 0.18 +2.6 522,078 + Pf6N2E2_458 0.23 +3.8 522,079 - Pf6N2E2_458 0.23 +2.4 522,079 - Pf6N2E2_458 0.23 +4.3 522,142 - Pf6N2E2_458 0.30 +3.2 522,270 + Pf6N2E2_458 0.45 +3.9 522,270 + Pf6N2E2_458 0.45 +2.9 522,271 - Pf6N2E2_458 0.45 +3.8 522,271 - Pf6N2E2_458 0.45 +3.5 522,271 - Pf6N2E2_458 0.45 +3.7 522,271 - Pf6N2E2_458 0.45 +4.1 522,328 - Pf6N2E2_458 0.51 +3.4 522,328 - Pf6N2E2_458 0.51 +2.4 522,381 + Pf6N2E2_458 0.57 +1.2 522,382 - Pf6N2E2_458 0.58 +2.6 522,382 - Pf6N2E2_458 0.58 +0.4 522,400 - Pf6N2E2_458 0.60 +3.0 522,400 - Pf6N2E2_458 0.60 +3.3 522,400 - Pf6N2E2_458 0.60 +2.6 522,468 + Pf6N2E2_458 0.67 -0.9 522,469 - Pf6N2E2_458 0.67 +4.0 522,530 + Pf6N2E2_458 0.74 +1.2 522,531 - Pf6N2E2_458 0.74 -0.9 522,696 + +3.4 522,696 + +3.4 522,696 + +3.8 522,696 + +4.7 522,696 + +4.3 522,696 + -1.3 522,696 + +5.0 522,696 + +3.4 522,697 - +4.9 522,697 - +2.8 522,697 - +3.4 522,697 - +5.7 522,697 - -2.4 522,697 - -1.6 522,699 + +3.4 522,699 + +3.6 522,699 + +3.4 522,699 + +3.8 522,700 - +4.4 522,702 + +0.5 522,702 + +3.1 522,702 + +4.0 522,702 + +1.1 522,703 - +2.6 522,703 - +3.8 522,703 - +4.1 522,703 - +4.2 522,703 - +2.1 522,761 + +3.7 522,762 - +0.2 522,762 - +4.1 522,782 + +4.8 522,782 + +3.7 522,783 - -1.6 522,783 - -1.3 522,783 - -1.1 522,807 + +3.3 522,807 + +3.5 522,895 + +3.1 522,933 + +3.3 522,933 + +2.4 522,933 + +3.6 522,934 - -1.8 522,934 - +0.7 522,934 - -1.3 523,072 - Pf6N2E2_459 0.14 -2.4 523,072 - Pf6N2E2_459 0.14 -0.7 523,185 + Pf6N2E2_459 0.25 +3.8 523,185 + Pf6N2E2_459 0.25 +2.4 523,356 + Pf6N2E2_459 0.42 +3.0 523,356 + Pf6N2E2_459 0.42 +2.5 523,357 - Pf6N2E2_459 0.42 +0.0 523,357 - Pf6N2E2_459 0.42 -0.9 523,357 - Pf6N2E2_459 0.42 -0.3 523,411 - Pf6N2E2_459 0.47 -0.7 523,411 - Pf6N2E2_459 0.47 +0.3 523,411 - Pf6N2E2_459 0.47 -0.5 523,411 - Pf6N2E2_459 0.47 -0.0 523,411 - Pf6N2E2_459 0.47 +0.4 523,492 - Pf6N2E2_459 0.55 -0.9 523,593 + Pf6N2E2_459 0.65 +0.2 523,593 + Pf6N2E2_459 0.65 +1.7 523,594 - Pf6N2E2_459 0.65 -0.4 523,594 - Pf6N2E2_459 0.65 +1.8 523,594 - +0.7 523,596 + Pf6N2E2_459 0.65 +3.9 523,596 + Pf6N2E2_459 0.65 +4.4 523,596 + Pf6N2E2_459 0.65 +3.4 523,596 + Pf6N2E2_459 0.65 -1.3 523,596 + Pf6N2E2_459 0.65 +2.9 523,596 + Pf6N2E2_459 0.65 +4.0 523,596 + Pf6N2E2_459 0.65 +3.1 523,596 + Pf6N2E2_459 0.65 +2.6 523,596 + Pf6N2E2_459 0.65 +1.7 523,596 + Pf6N2E2_459 0.65 +2.1 523,596 + Pf6N2E2_459 0.65 +3.6 523,596 + Pf6N2E2_459 0.65 -0.3 523,597 - Pf6N2E2_459 0.66 +1.1 523,597 - Pf6N2E2_459 0.66 +2.2 523,597 - Pf6N2E2_459 0.66 -0.9 523,597 - Pf6N2E2_459 0.66 +0.6 523,597 - Pf6N2E2_459 0.66 -0.0 523,597 - Pf6N2E2_459 0.66 +0.7 523,597 - Pf6N2E2_459 0.66 +0.4 523,597 - Pf6N2E2_459 0.66 -1.8 523,597 - Pf6N2E2_459 0.66 -0.3 523,597 - Pf6N2E2_459 0.66 -2.6 523,597 - Pf6N2E2_459 0.66 +0.8 523,608 + Pf6N2E2_459 0.67 +3.3 523,652 + Pf6N2E2_459 0.71 +3.1 523,652 + Pf6N2E2_459 0.71 -1.1 523,652 + Pf6N2E2_459 0.71 -2.6 523,652 + Pf6N2E2_459 0.71 -2.1 523,652 + Pf6N2E2_459 0.71 +2.8 523,653 - Pf6N2E2_459 0.71 +1.7
Or see this region's nucleotide sequence