Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4483

Experiment: RCH2 defined with Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4482 and Pf6N2E2_4483 are separated by 1 nucleotidesPf6N2E2_4483 and Pf6N2E2_4484 are separated by 224 nucleotides Pf6N2E2_4482 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 5,213,884 to 5,215,107 _4482 Pf6N2E2_4483 - Ferric iron ABC transporter, iron-binding protein, at 5,215,109 to 5,216,269 _4483 Pf6N2E2_4484 - Ferric iron ABC transporter, permease protein, at 5,216,494 to 5,218,110 _4484 Position (kb) 5215 5216 5217Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5215.124 kb on + strandat 5215.125 kb on - strandat 5215.125 kb on - strandat 5215.125 kb on - strandat 5215.125 kb on - strandat 5215.326 kb on + strand, within Pf6N2E2_4483at 5215.352 kb on + strand, within Pf6N2E2_4483at 5215.352 kb on + strand, within Pf6N2E2_4483at 5215.352 kb on + strand, within Pf6N2E2_4483at 5215.352 kb on + strand, within Pf6N2E2_4483at 5215.352 kb on + strand, within Pf6N2E2_4483at 5215.353 kb on - strand, within Pf6N2E2_4483at 5215.353 kb on - strand, within Pf6N2E2_4483at 5215.353 kb on - strand, within Pf6N2E2_4483at 5215.397 kb on + strand, within Pf6N2E2_4483at 5215.397 kb on + strand, within Pf6N2E2_4483at 5215.397 kb on + strand, within Pf6N2E2_4483at 5215.397 kb on + strand, within Pf6N2E2_4483at 5215.398 kb on - strand, within Pf6N2E2_4483at 5215.398 kb on - strand, within Pf6N2E2_4483at 5215.398 kb on - strand, within Pf6N2E2_4483at 5215.656 kb on - strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.757 kb on + strand, within Pf6N2E2_4483at 5215.757 kb on + strand, within Pf6N2E2_4483at 5215.757 kb on + strand, within Pf6N2E2_4483at 5215.757 kb on + strand, within Pf6N2E2_4483at 5215.758 kb on - strand, within Pf6N2E2_4483at 5215.758 kb on - strand, within Pf6N2E2_4483at 5215.758 kb on - strand, within Pf6N2E2_4483at 5215.921 kb on + strand, within Pf6N2E2_4483at 5215.921 kb on + strand, within Pf6N2E2_4483at 5215.921 kb on + strand, within Pf6N2E2_4483at 5215.921 kb on + strand, within Pf6N2E2_4483at 5215.921 kb on + strand, within Pf6N2E2_4483at 5215.922 kb on - strand, within Pf6N2E2_4483at 5215.922 kb on - strand, within Pf6N2E2_4483at 5215.922 kb on - strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.929 kb on - strand, within Pf6N2E2_4483at 5215.929 kb on - strand, within Pf6N2E2_4483at 5215.929 kb on - strand, within Pf6N2E2_4483at 5215.929 kb on - strand, within Pf6N2E2_4483at 5215.929 kb on - strand, within Pf6N2E2_4483at 5215.931 kb on + strand, within Pf6N2E2_4483at 5215.931 kb on + strand, within Pf6N2E2_4483at 5215.931 kb on + strand, within Pf6N2E2_4483at 5215.931 kb on + strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5216.167 kb on - strandat 5216.195 kb on - strandat 5216.267 kb on + strandat 5216.267 kb on + strandat 5216.355 kb on + strandat 5216.355 kb on + strandat 5216.355 kb on + strandat 5216.355 kb on + strandat 5216.356 kb on - strandat 5216.356 kb on - strandat 5216.356 kb on - strandat 5216.356 kb on - strandat 5216.387 kb on + strandat 5216.446 kb on + strandat 5216.566 kb on - strandat 5216.625 kb on + strandat 5216.626 kb on - strandat 5216.696 kb on + strand, within Pf6N2E2_4484at 5216.696 kb on + strand, within Pf6N2E2_4484at 5216.696 kb on + strand, within Pf6N2E2_4484at 5216.696 kb on + strand, within Pf6N2E2_4484at 5216.696 kb on + strand, within Pf6N2E2_4484at 5216.696 kb on + strand, within Pf6N2E2_4484at 5216.696 kb on + strand, within Pf6N2E2_4484at 5216.697 kb on - strand, within Pf6N2E2_4484at 5216.697 kb on - strand, within Pf6N2E2_4484at 5216.697 kb on - strand, within Pf6N2E2_4484at 5216.697 kb on - strand, within Pf6N2E2_4484at 5216.697 kb on - strand, within Pf6N2E2_4484at 5216.697 kb on - strand, within Pf6N2E2_4484at 5216.697 kb on - strand, within Pf6N2E2_4484at 5216.697 kb on - strand, within Pf6N2E2_4484at 5216.697 kb on - strand, within Pf6N2E2_4484at 5216.697 kb on - strand, within Pf6N2E2_4484at 5216.791 kb on + strand, within Pf6N2E2_4484at 5216.791 kb on + strand, within Pf6N2E2_4484at 5216.791 kb on + strand, within Pf6N2E2_4484at 5216.791 kb on + strand, within Pf6N2E2_4484at 5216.792 kb on - strand, within Pf6N2E2_4484at 5216.792 kb on - strand, within Pf6N2E2_4484at 5216.792 kb on - strand, within Pf6N2E2_4484at 5216.935 kb on + strand, within Pf6N2E2_4484at 5216.935 kb on + strand, within Pf6N2E2_4484at 5216.935 kb on + strand, within Pf6N2E2_4484at 5216.935 kb on + strand, within Pf6N2E2_4484at 5216.935 kb on + strand, within Pf6N2E2_4484at 5216.941 kb on + strand, within Pf6N2E2_4484at 5216.941 kb on + strand, within Pf6N2E2_4484at 5216.941 kb on + strand, within Pf6N2E2_4484at 5216.941 kb on + strand, within Pf6N2E2_4484at 5216.942 kb on - strand, within Pf6N2E2_4484at 5216.942 kb on - strand, within Pf6N2E2_4484at 5216.942 kb on - strand, within Pf6N2E2_4484at 5216.947 kb on + strand, within Pf6N2E2_4484at 5216.947 kb on + strand, within Pf6N2E2_4484at 5216.948 kb on - strand, within Pf6N2E2_4484at 5216.948 kb on - strand, within Pf6N2E2_4484at 5217.151 kb on - strand, within Pf6N2E2_4484at 5217.151 kb on - strand, within Pf6N2E2_4484at 5217.163 kb on + strand, within Pf6N2E2_4484at 5217.164 kb on - strand, within Pf6N2E2_4484at 5217.164 kb on - strand, within Pf6N2E2_4484at 5217.164 kb on - strand, within Pf6N2E2_4484at 5217.176 kb on - strand, within Pf6N2E2_4484at 5217.176 kb on - strand, within Pf6N2E2_4484at 5217.248 kb on - strand, within Pf6N2E2_4484at 5217.248 kb on - strand, within Pf6N2E2_4484

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Cobalt chloride 0.04 mM
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5,215,124 + +0.7
5,215,125 - -0.8
5,215,125 - +0.8
5,215,125 - +0.1
5,215,125 - -1.3
5,215,326 + Pf6N2E2_4483 0.19 -1.3
5,215,352 + Pf6N2E2_4483 0.21 -0.3
5,215,352 + Pf6N2E2_4483 0.21 -1.8
5,215,352 + Pf6N2E2_4483 0.21 -3.0
5,215,352 + Pf6N2E2_4483 0.21 -3.0
5,215,352 + Pf6N2E2_4483 0.21 -1.3
5,215,353 - Pf6N2E2_4483 0.21 +1.7
5,215,353 - Pf6N2E2_4483 0.21 -1.9
5,215,353 - Pf6N2E2_4483 0.21 -0.3
5,215,397 + Pf6N2E2_4483 0.25 -1.5
5,215,397 + Pf6N2E2_4483 0.25 -1.7
5,215,397 + Pf6N2E2_4483 0.25 -3.3
5,215,397 + Pf6N2E2_4483 0.25 -3.4
5,215,398 - Pf6N2E2_4483 0.25 -3.4
5,215,398 - Pf6N2E2_4483 0.25 -2.3
5,215,398 - Pf6N2E2_4483 0.25 -2.4
5,215,656 - Pf6N2E2_4483 0.47 -3.0
5,215,694 + Pf6N2E2_4483 0.50 -0.0
5,215,694 + Pf6N2E2_4483 0.50 -1.2
5,215,694 + Pf6N2E2_4483 0.50 -3.6
5,215,694 + Pf6N2E2_4483 0.50 -1.4
5,215,694 + Pf6N2E2_4483 0.50 -4.7
5,215,694 + Pf6N2E2_4483 0.50 -2.2
5,215,694 + Pf6N2E2_4483 0.50 +0.1
5,215,694 + Pf6N2E2_4483 0.50 +0.1
5,215,694 + Pf6N2E2_4483 0.50 +1.7
5,215,694 + Pf6N2E2_4483 0.50 -2.6
5,215,694 + Pf6N2E2_4483 0.50 +1.7
5,215,695 - Pf6N2E2_4483 0.50 -1.4
5,215,695 - Pf6N2E2_4483 0.50 +0.7
5,215,695 - Pf6N2E2_4483 0.50 -2.5
5,215,695 - Pf6N2E2_4483 0.50 -4.1
5,215,695 - Pf6N2E2_4483 0.50 -1.0
5,215,695 - Pf6N2E2_4483 0.50 +1.7
5,215,695 - Pf6N2E2_4483 0.50 -0.5
5,215,757 + Pf6N2E2_4483 0.56 -1.3
5,215,757 + Pf6N2E2_4483 0.56 -2.9
5,215,757 + Pf6N2E2_4483 0.56 -2.8
5,215,757 + Pf6N2E2_4483 0.56 -1.3
5,215,758 - Pf6N2E2_4483 0.56 -2.7
5,215,758 - Pf6N2E2_4483 0.56 +0.2
5,215,758 - Pf6N2E2_4483 0.56 -3.8
5,215,921 + Pf6N2E2_4483 0.70 -1.6
5,215,921 + Pf6N2E2_4483 0.70 -2.7
5,215,921 + Pf6N2E2_4483 0.70 -0.7
5,215,921 + Pf6N2E2_4483 0.70 -2.6
5,215,921 + Pf6N2E2_4483 0.70 -2.6
5,215,922 - Pf6N2E2_4483 0.70 -2.8
5,215,922 - Pf6N2E2_4483 0.70 -2.1
5,215,922 - Pf6N2E2_4483 0.70 -3.6
5,215,925 + Pf6N2E2_4483 0.70 -2.0
5,215,925 + Pf6N2E2_4483 0.70 -1.7
5,215,925 + Pf6N2E2_4483 0.70 -1.2
5,215,925 + Pf6N2E2_4483 0.70 -0.6
5,215,925 + Pf6N2E2_4483 0.70 -1.7
5,215,925 + Pf6N2E2_4483 0.70 +0.1
5,215,925 + Pf6N2E2_4483 0.70 -4.2
5,215,925 + Pf6N2E2_4483 0.70 -1.6
5,215,925 + Pf6N2E2_4483 0.70 -3.5
5,215,925 + Pf6N2E2_4483 0.70 -0.3
5,215,925 + Pf6N2E2_4483 0.70 -1.9
5,215,925 + Pf6N2E2_4483 0.70 -1.4
5,215,925 + Pf6N2E2_4483 0.70 -0.9
5,215,925 + Pf6N2E2_4483 0.70 -1.0
5,215,925 + Pf6N2E2_4483 0.70 -0.4
5,215,925 + Pf6N2E2_4483 0.70 -2.5
5,215,926 - Pf6N2E2_4483 0.70 -2.3
5,215,926 - Pf6N2E2_4483 0.70 +1.7
5,215,926 - Pf6N2E2_4483 0.70 -2.4
5,215,926 - Pf6N2E2_4483 0.70 -3.1
5,215,926 - Pf6N2E2_4483 0.70 -1.2
5,215,926 - Pf6N2E2_4483 0.70 -1.3
5,215,926 - Pf6N2E2_4483 0.70 -2.3
5,215,926 - Pf6N2E2_4483 0.70 -1.3
5,215,926 - Pf6N2E2_4483 0.70 -2.4
5,215,926 - Pf6N2E2_4483 0.70 -3.3
5,215,926 - Pf6N2E2_4483 0.70 -3.5
5,215,926 - Pf6N2E2_4483 0.70 -2.2
5,215,926 - Pf6N2E2_4483 0.70 -0.6
5,215,926 - Pf6N2E2_4483 0.70 -0.3
5,215,926 - Pf6N2E2_4483 0.70 -0.6
5,215,926 - Pf6N2E2_4483 0.70 +1.7
5,215,926 - Pf6N2E2_4483 0.70 -2.8
5,215,926 - Pf6N2E2_4483 0.70 -2.6
5,215,926 - Pf6N2E2_4483 0.70 -4.0
5,215,926 - Pf6N2E2_4483 0.70 -2.7
5,215,926 - Pf6N2E2_4483 0.70 -1.4
5,215,926 - Pf6N2E2_4483 0.70 -2.3
5,215,928 + Pf6N2E2_4483 0.71 -2.1
5,215,928 + Pf6N2E2_4483 0.71 -2.0
5,215,928 + Pf6N2E2_4483 0.71 -1.3
5,215,928 + Pf6N2E2_4483 0.71 -2.4
5,215,928 + Pf6N2E2_4483 0.71 -1.4
5,215,928 + Pf6N2E2_4483 0.71 -2.1
5,215,928 + Pf6N2E2_4483 0.71 -0.4
5,215,928 + Pf6N2E2_4483 0.71 -2.7
5,215,928 + Pf6N2E2_4483 0.71 -3.3
5,215,929 - Pf6N2E2_4483 0.71 +0.7
5,215,929 - Pf6N2E2_4483 0.71 -0.6
5,215,929 - Pf6N2E2_4483 0.71 -2.4
5,215,929 - Pf6N2E2_4483 0.71 -1.9
5,215,929 - Pf6N2E2_4483 0.71 -1.8
5,215,931 + Pf6N2E2_4483 0.71 -1.0
5,215,931 + Pf6N2E2_4483 0.71 -5.1
5,215,931 + Pf6N2E2_4483 0.71 +0.2
5,215,931 + Pf6N2E2_4483 0.71 -2.6
5,215,932 - Pf6N2E2_4483 0.71 -1.1
5,215,932 - Pf6N2E2_4483 0.71 +0.1
5,215,932 - Pf6N2E2_4483 0.71 +0.7
5,215,932 - Pf6N2E2_4483 0.71 -3.4
5,215,932 - Pf6N2E2_4483 0.71 -1.8
5,215,932 - Pf6N2E2_4483 0.71 -1.6
5,215,932 - Pf6N2E2_4483 0.71 -2.3
5,215,932 - Pf6N2E2_4483 0.71 -1.9
5,216,167 - -2.2
5,216,195 - -1.9
5,216,267 + -0.1
5,216,267 + -0.9
5,216,355 + +1.1
5,216,355 + +0.8
5,216,355 + -0.9
5,216,355 + +1.9
5,216,356 - -0.9
5,216,356 - -1.7
5,216,356 - -2.7
5,216,356 - -1.1
5,216,387 + +0.5
5,216,446 + +1.0
5,216,566 - -3.6
5,216,625 + -4.6
5,216,626 - +1.7
5,216,696 + Pf6N2E2_4484 0.12 -2.6
5,216,696 + Pf6N2E2_4484 0.12 -2.5
5,216,696 + Pf6N2E2_4484 0.12 -3.5
5,216,696 + Pf6N2E2_4484 0.12 -1.4
5,216,696 + Pf6N2E2_4484 0.12 -2.5
5,216,696 + Pf6N2E2_4484 0.12 +0.1
5,216,696 + Pf6N2E2_4484 0.12 -4.1
5,216,697 - Pf6N2E2_4484 0.13 -1.7
5,216,697 - Pf6N2E2_4484 0.13 -3.4
5,216,697 - Pf6N2E2_4484 0.13 -2.9
5,216,697 - Pf6N2E2_4484 0.13 -0.6
5,216,697 - Pf6N2E2_4484 0.13 -1.7
5,216,697 - Pf6N2E2_4484 0.13 -2.0
5,216,697 - Pf6N2E2_4484 0.13 -1.1
5,216,697 - Pf6N2E2_4484 0.13 -1.6
5,216,697 - Pf6N2E2_4484 0.13 -3.3
5,216,697 - Pf6N2E2_4484 0.13 -2.2
5,216,791 + Pf6N2E2_4484 0.18 -2.4
5,216,791 + Pf6N2E2_4484 0.18 -2.0
5,216,791 + Pf6N2E2_4484 0.18 +0.7
5,216,791 + Pf6N2E2_4484 0.18 -2.1
5,216,792 - Pf6N2E2_4484 0.18 -0.6
5,216,792 - Pf6N2E2_4484 0.18 +0.1
5,216,792 - Pf6N2E2_4484 0.18 -1.1
5,216,935 + Pf6N2E2_4484 0.27 -3.2
5,216,935 + Pf6N2E2_4484 0.27 -3.0
5,216,935 + Pf6N2E2_4484 0.27 -1.8
5,216,935 + Pf6N2E2_4484 0.27 -4.3
5,216,935 + Pf6N2E2_4484 0.27 +0.1
5,216,941 + Pf6N2E2_4484 0.28 -0.9
5,216,941 + Pf6N2E2_4484 0.28 -3.2
5,216,941 + Pf6N2E2_4484 0.28 -1.7
5,216,941 + Pf6N2E2_4484 0.28 -1.3
5,216,942 - Pf6N2E2_4484 0.28 -0.1
5,216,942 - Pf6N2E2_4484 0.28 +1.7
5,216,942 - Pf6N2E2_4484 0.28 -1.7
5,216,947 + Pf6N2E2_4484 0.28 -1.3
5,216,947 + Pf6N2E2_4484 0.28 -2.1
5,216,948 - Pf6N2E2_4484 0.28 -1.4
5,216,948 - Pf6N2E2_4484 0.28 -0.6
5,217,151 - Pf6N2E2_4484 0.41 +0.1
5,217,151 - Pf6N2E2_4484 0.41 -1.7
5,217,163 + Pf6N2E2_4484 0.41 -2.5
5,217,164 - Pf6N2E2_4484 0.41 -1.3
5,217,164 - Pf6N2E2_4484 0.41 -1.6
5,217,164 - Pf6N2E2_4484 0.41 +0.7
5,217,176 - Pf6N2E2_4484 0.42 -3.0
5,217,176 - Pf6N2E2_4484 0.42 +0.7
5,217,248 - Pf6N2E2_4484 0.47 -2.6
5,217,248 - Pf6N2E2_4484 0.47 -0.3

Or see this region's nucleotide sequence