Experiment: RCH2 defined with Cobalt chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3973 and Pf6N2E2_3974 are separated by 288 nucleotides Pf6N2E2_3974 and Pf6N2E2_3975 are separated by 12 nucleotides Pf6N2E2_3975 and Pf6N2E2_3976 are separated by 5 nucleotides
Pf6N2E2_3973 - hypothetical protein, at 4,622,751 to 4,623,119
_3973
Pf6N2E2_3974 - Taurine transport system permease protein TauC, at 4,623,408 to 4,624,274
_3974
Pf6N2E2_3975 - Taurine transport ATP-binding protein TauB, at 4,624,287 to 4,625,147
_3975
Pf6N2E2_3976 - Taurine-binding periplasmic protein TauA, at 4,625,153 to 4,626,178
_3976
Position (kb) 4623
4624
4625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4622.436 kb on + strand at 4622.436 kb on + strand at 4622.457 kb on + strand at 4622.498 kb on - strand at 4622.548 kb on + strand at 4622.564 kb on - strand at 4622.564 kb on - strand at 4622.564 kb on - strand at 4622.580 kb on + strand at 4622.580 kb on + strand at 4622.580 kb on + strand at 4622.581 kb on - strand at 4622.581 kb on - strand at 4622.581 kb on - strand at 4622.581 kb on - strand at 4622.581 kb on - strand at 4622.581 kb on - strand at 4622.581 kb on - strand at 4622.605 kb on - strand at 4622.605 kb on - strand at 4622.685 kb on + strand at 4622.685 kb on + strand at 4622.685 kb on + strand at 4622.685 kb on + strand at 4622.685 kb on + strand at 4622.685 kb on + strand at 4622.685 kb on + strand at 4622.685 kb on + strand at 4622.685 kb on + strand at 4622.686 kb on - strand at 4622.686 kb on - strand at 4622.686 kb on - strand at 4622.686 kb on - strand at 4622.698 kb on + strand at 4622.698 kb on + strand at 4622.698 kb on + strand at 4622.698 kb on + strand at 4622.698 kb on + strand at 4622.698 kb on + strand at 4622.698 kb on + strand at 4622.699 kb on - strand at 4622.699 kb on - strand at 4622.699 kb on - strand at 4622.699 kb on - strand at 4622.700 kb on + strand at 4622.700 kb on + strand at 4622.700 kb on + strand at 4622.700 kb on + strand at 4622.718 kb on + strand at 4622.718 kb on + strand at 4622.737 kb on + strand at 4622.737 kb on + strand at 4622.737 kb on + strand at 4622.738 kb on - strand at 4622.850 kb on + strand, within Pf6N2E2_3973 at 4622.850 kb on + strand, within Pf6N2E2_3973 at 4622.850 kb on + strand, within Pf6N2E2_3973 at 4622.851 kb on - strand, within Pf6N2E2_3973 at 4622.851 kb on - strand, within Pf6N2E2_3973 at 4622.851 kb on - strand, within Pf6N2E2_3973 at 4622.853 kb on + strand, within Pf6N2E2_3973 at 4622.854 kb on - strand, within Pf6N2E2_3973 at 4622.889 kb on - strand, within Pf6N2E2_3973 at 4623.192 kb on + strand at 4623.553 kb on + strand, within Pf6N2E2_3974 at 4623.553 kb on + strand, within Pf6N2E2_3974 at 4623.553 kb on + strand, within Pf6N2E2_3974 at 4623.553 kb on + strand, within Pf6N2E2_3974 at 4623.553 kb on + strand, within Pf6N2E2_3974 at 4623.553 kb on + strand, within Pf6N2E2_3974 at 4623.553 kb on + strand, within Pf6N2E2_3974 at 4623.553 kb on + strand, within Pf6N2E2_3974 at 4623.553 kb on + strand, within Pf6N2E2_3974 at 4623.554 kb on - strand, within Pf6N2E2_3974 at 4623.554 kb on - strand, within Pf6N2E2_3974 at 4623.554 kb on - strand, within Pf6N2E2_3974 at 4623.554 kb on - strand, within Pf6N2E2_3974 at 4623.554 kb on - strand, within Pf6N2E2_3974 at 4623.554 kb on - strand, within Pf6N2E2_3974 at 4623.715 kb on + strand, within Pf6N2E2_3974 at 4623.715 kb on + strand, within Pf6N2E2_3974 at 4623.766 kb on + strand, within Pf6N2E2_3974 at 4623.766 kb on + strand, within Pf6N2E2_3974 at 4623.766 kb on + strand, within Pf6N2E2_3974 at 4623.766 kb on + strand, within Pf6N2E2_3974 at 4623.766 kb on + strand, within Pf6N2E2_3974 at 4623.766 kb on + strand, within Pf6N2E2_3974 at 4623.766 kb on + strand, within Pf6N2E2_3974 at 4623.766 kb on + strand, within Pf6N2E2_3974 at 4623.766 kb on + strand, within Pf6N2E2_3974 at 4623.766 kb on + strand, within Pf6N2E2_3974 at 4623.767 kb on - strand, within Pf6N2E2_3974 at 4623.767 kb on - strand, within Pf6N2E2_3974 at 4623.767 kb on - strand, within Pf6N2E2_3974 at 4623.767 kb on - strand, within Pf6N2E2_3974 at 4623.767 kb on - strand, within Pf6N2E2_3974 at 4623.767 kb on - strand, within Pf6N2E2_3974 at 4623.767 kb on - strand, within Pf6N2E2_3974 at 4623.767 kb on - strand, within Pf6N2E2_3974 at 4623.767 kb on - strand, within Pf6N2E2_3974 at 4624.048 kb on + strand, within Pf6N2E2_3974 at 4624.048 kb on + strand, within Pf6N2E2_3974 at 4624.049 kb on - strand, within Pf6N2E2_3974 at 4624.244 kb on - strand at 4624.244 kb on - strand at 4624.254 kb on + strand at 4624.255 kb on - strand at 4624.255 kb on - strand at 4624.255 kb on - strand at 4624.255 kb on - strand at 4624.263 kb on + strand at 4624.264 kb on - strand at 4624.291 kb on + strand at 4624.292 kb on - strand at 4624.421 kb on - strand, within Pf6N2E2_3975 at 4624.699 kb on + strand, within Pf6N2E2_3975 at 4624.700 kb on - strand, within Pf6N2E2_3975 at 4624.738 kb on + strand, within Pf6N2E2_3975 at 4624.738 kb on + strand, within Pf6N2E2_3975 at 4624.738 kb on + strand, within Pf6N2E2_3975 at 4624.739 kb on - strand, within Pf6N2E2_3975 at 4624.739 kb on - strand, within Pf6N2E2_3975 at 4625.103 kb on - strand at 4625.190 kb on + strand at 4625.190 kb on + strand at 4625.190 kb on + strand at 4625.190 kb on + strand at 4625.190 kb on + strand at 4625.191 kb on - strand at 4625.191 kb on - strand at 4625.191 kb on - strand at 4625.256 kb on + strand, within Pf6N2E2_3976
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Cobalt chloride 0.04 mM remove 4,622,436 + +0.5 4,622,436 + -0.1 4,622,457 + +1.7 4,622,498 - +1.0 4,622,548 + -1.3 4,622,564 - +1.2 4,622,564 - +2.0 4,622,564 - -1.9 4,622,580 + -0.9 4,622,580 + -1.3 4,622,580 + -1.5 4,622,581 - +1.0 4,622,581 - -0.4 4,622,581 - -0.9 4,622,581 - -2.3 4,622,581 - +0.9 4,622,581 - +0.8 4,622,581 - -2.2 4,622,605 - -1.5 4,622,605 - -0.2 4,622,685 + +0.5 4,622,685 + +0.7 4,622,685 + -1.1 4,622,685 + +3.0 4,622,685 + -1.5 4,622,685 + -0.1 4,622,685 + -1.7 4,622,685 + -0.6 4,622,685 + +0.1 4,622,686 - -0.9 4,622,686 - +0.5 4,622,686 - +0.3 4,622,686 - +1.1 4,622,698 + +2.6 4,622,698 + +1.5 4,622,698 + -1.6 4,622,698 + -0.6 4,622,698 + +1.4 4,622,698 + -1.7 4,622,698 + +1.7 4,622,699 - +0.3 4,622,699 - -2.1 4,622,699 - +1.2 4,622,699 - +1.7 4,622,700 + -1.5 4,622,700 + +0.1 4,622,700 + -1.6 4,622,700 + -2.1 4,622,718 + +1.0 4,622,718 + +0.3 4,622,737 + +0.1 4,622,737 + -1.3 4,622,737 + -1.7 4,622,738 - -1.6 4,622,850 + Pf6N2E2_3973 0.27 +1.1 4,622,850 + Pf6N2E2_3973 0.27 +1.7 4,622,850 + Pf6N2E2_3973 0.27 +1.9 4,622,851 - Pf6N2E2_3973 0.27 -0.2 4,622,851 - Pf6N2E2_3973 0.27 -0.5 4,622,851 - Pf6N2E2_3973 0.27 -3.5 4,622,853 + Pf6N2E2_3973 0.28 +0.8 4,622,854 - Pf6N2E2_3973 0.28 +0.7 4,622,889 - Pf6N2E2_3973 0.37 +0.7 4,623,192 + -0.1 4,623,553 + Pf6N2E2_3974 0.17 +0.9 4,623,553 + Pf6N2E2_3974 0.17 +0.8 4,623,553 + Pf6N2E2_3974 0.17 +1.5 4,623,553 + Pf6N2E2_3974 0.17 +0.6 4,623,553 + Pf6N2E2_3974 0.17 -0.1 4,623,553 + Pf6N2E2_3974 0.17 -0.2 4,623,553 + Pf6N2E2_3974 0.17 +0.3 4,623,553 + Pf6N2E2_3974 0.17 +1.3 4,623,553 + Pf6N2E2_3974 0.17 -2.7 4,623,554 - Pf6N2E2_3974 0.17 +0.3 4,623,554 - Pf6N2E2_3974 0.17 +1.4 4,623,554 - Pf6N2E2_3974 0.17 +1.4 4,623,554 - Pf6N2E2_3974 0.17 +0.9 4,623,554 - Pf6N2E2_3974 0.17 -2.3 4,623,554 - Pf6N2E2_3974 0.17 +0.3 4,623,715 + Pf6N2E2_3974 0.35 +1.0 4,623,715 + Pf6N2E2_3974 0.35 -0.2 4,623,766 + Pf6N2E2_3974 0.41 -0.3 4,623,766 + Pf6N2E2_3974 0.41 +1.2 4,623,766 + Pf6N2E2_3974 0.41 -0.6 4,623,766 + Pf6N2E2_3974 0.41 -0.3 4,623,766 + Pf6N2E2_3974 0.41 +1.0 4,623,766 + Pf6N2E2_3974 0.41 -0.4 4,623,766 + Pf6N2E2_3974 0.41 -2.8 4,623,766 + Pf6N2E2_3974 0.41 +3.0 4,623,766 + Pf6N2E2_3974 0.41 -0.1 4,623,766 + Pf6N2E2_3974 0.41 +0.2 4,623,767 - Pf6N2E2_3974 0.41 -0.2 4,623,767 - Pf6N2E2_3974 0.41 +0.2 4,623,767 - Pf6N2E2_3974 0.41 +0.4 4,623,767 - Pf6N2E2_3974 0.41 +0.6 4,623,767 - Pf6N2E2_3974 0.41 +0.5 4,623,767 - Pf6N2E2_3974 0.41 -3.2 4,623,767 - Pf6N2E2_3974 0.41 +0.1 4,623,767 - Pf6N2E2_3974 0.41 +0.7 4,623,767 - Pf6N2E2_3974 0.41 +1.0 4,624,048 + Pf6N2E2_3974 0.74 -2.4 4,624,048 + Pf6N2E2_3974 0.74 +1.7 4,624,049 - Pf6N2E2_3974 0.74 -2.0 4,624,244 - -2.0 4,624,244 - -0.8 4,624,254 + +1.9 4,624,255 - -0.8 4,624,255 - +0.6 4,624,255 - +0.9 4,624,255 - -1.9 4,624,263 + +0.2 4,624,264 - -0.2 4,624,291 + -0.8 4,624,292 - -1.0 4,624,421 - Pf6N2E2_3975 0.16 +0.1 4,624,699 + Pf6N2E2_3975 0.48 -0.6 4,624,700 - Pf6N2E2_3975 0.48 -0.6 4,624,738 + Pf6N2E2_3975 0.52 +1.4 4,624,738 + Pf6N2E2_3975 0.52 +0.6 4,624,738 + Pf6N2E2_3975 0.52 +0.4 4,624,739 - Pf6N2E2_3975 0.52 +0.7 4,624,739 - Pf6N2E2_3975 0.52 -1.5 4,625,103 - +0.5 4,625,190 + +0.5 4,625,190 + -1.1 4,625,190 + +1.1 4,625,190 + +0.5 4,625,190 + +1.6 4,625,191 - +2.3 4,625,191 - -0.6 4,625,191 - +1.0 4,625,256 + Pf6N2E2_3976 0.10 -2.7
Or see this region's nucleotide sequence