Experiment: RCH2 defined with Cobalt chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1686 and Pf6N2E2_1687 overlap by 7 nucleotides Pf6N2E2_1687 and Pf6N2E2_1688 are separated by 35 nucleotides
Pf6N2E2_1686 - Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1), at 1,995,479 to 1,996,540
_1686
Pf6N2E2_1687 - putative iron ABC transporter ATP-binding protein, at 1,996,534 to 1,997,289
_1687
Pf6N2E2_1688 - Permeases of the major facilitator superfamily, at 1,997,325 to 1,998,581
_1688
Position (kb) 1996
1997
1998 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1996.753 kb on + strand, within Pf6N2E2_1687 at 1996.753 kb on + strand, within Pf6N2E2_1687 at 1996.754 kb on - strand, within Pf6N2E2_1687 at 1996.754 kb on - strand, within Pf6N2E2_1687 at 1996.754 kb on - strand, within Pf6N2E2_1687 at 1996.754 kb on - strand, within Pf6N2E2_1687 at 1996.795 kb on + strand, within Pf6N2E2_1687 at 1996.796 kb on - strand, within Pf6N2E2_1687 at 1996.796 kb on - strand, within Pf6N2E2_1687 at 1996.796 kb on - strand, within Pf6N2E2_1687 at 1996.796 kb on - strand, within Pf6N2E2_1687 at 1997.087 kb on + strand, within Pf6N2E2_1687 at 1997.087 kb on + strand, within Pf6N2E2_1687 at 1997.088 kb on - strand, within Pf6N2E2_1687 at 1997.189 kb on + strand, within Pf6N2E2_1687 at 1997.189 kb on + strand, within Pf6N2E2_1687 at 1997.190 kb on - strand, within Pf6N2E2_1687 at 1997.218 kb on + strand at 1997.218 kb on + strand at 1997.218 kb on + strand at 1997.280 kb on + strand at 1997.326 kb on + strand at 1997.327 kb on - strand at 1997.327 kb on - strand at 1997.499 kb on - strand, within Pf6N2E2_1688 at 1997.499 kb on - strand, within Pf6N2E2_1688 at 1997.678 kb on - strand, within Pf6N2E2_1688 at 1997.678 kb on - strand, within Pf6N2E2_1688 at 1997.678 kb on - strand, within Pf6N2E2_1688 at 1997.678 kb on - strand, within Pf6N2E2_1688 at 1997.691 kb on + strand, within Pf6N2E2_1688 at 1997.928 kb on - strand, within Pf6N2E2_1688 at 1997.928 kb on - strand, within Pf6N2E2_1688 at 1998.080 kb on - strand, within Pf6N2E2_1688 at 1998.186 kb on - strand, within Pf6N2E2_1688
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Cobalt chloride 0.04 mM remove 1,996,753 + Pf6N2E2_1687 0.29 -2.0 1,996,753 + Pf6N2E2_1687 0.29 -1.1 1,996,754 - Pf6N2E2_1687 0.29 +0.3 1,996,754 - Pf6N2E2_1687 0.29 -1.6 1,996,754 - Pf6N2E2_1687 0.29 +0.2 1,996,754 - Pf6N2E2_1687 0.29 -0.7 1,996,795 + Pf6N2E2_1687 0.35 -0.3 1,996,796 - Pf6N2E2_1687 0.35 +1.2 1,996,796 - Pf6N2E2_1687 0.35 -2.1 1,996,796 - Pf6N2E2_1687 0.35 -0.5 1,996,796 - Pf6N2E2_1687 0.35 -0.8 1,997,087 + Pf6N2E2_1687 0.73 +0.0 1,997,087 + Pf6N2E2_1687 0.73 +0.6 1,997,088 - Pf6N2E2_1687 0.73 -0.2 1,997,189 + Pf6N2E2_1687 0.87 -1.2 1,997,189 + Pf6N2E2_1687 0.87 +0.5 1,997,190 - Pf6N2E2_1687 0.87 +0.6 1,997,218 + -1.3 1,997,218 + +1.2 1,997,218 + +3.1 1,997,280 + -0.4 1,997,326 + -0.3 1,997,327 - -1.1 1,997,327 - -0.2 1,997,499 - Pf6N2E2_1688 0.14 +2.0 1,997,499 - Pf6N2E2_1688 0.14 -1.4 1,997,678 - Pf6N2E2_1688 0.28 +1.3 1,997,678 - Pf6N2E2_1688 0.28 -1.0 1,997,678 - Pf6N2E2_1688 0.28 -3.4 1,997,678 - Pf6N2E2_1688 0.28 -3.1 1,997,691 + Pf6N2E2_1688 0.29 -0.4 1,997,928 - Pf6N2E2_1688 0.48 -1.0 1,997,928 - Pf6N2E2_1688 0.48 -2.2 1,998,080 - Pf6N2E2_1688 0.60 +1.0 1,998,186 - Pf6N2E2_1688 0.68 -0.2
Or see this region's nucleotide sequence