Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36440

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36430 and BPHYT_RS36435 overlap by 14 nucleotidesBPHYT_RS36435 and BPHYT_RS36440 are separated by 657 nucleotidesBPHYT_RS36440 and BPHYT_RS36445 are separated by 163 nucleotidesBPHYT_RS36445 and BPHYT_RS36450 are separated by 39 nucleotides BPHYT_RS36430: BPHYT_RS36430 - hypothetical protein, at 99,315 to 99,608 _RS36430 BPHYT_RS36435: BPHYT_RS36435 - hypothetical protein, at 99,595 to 99,933 _RS36435 BPHYT_RS36440: BPHYT_RS36440 - hypothetical protein, at 100,591 to 100,908 _RS36440 BPHYT_RS36445: BPHYT_RS36445 - hypothetical protein, at 101,072 to 101,320 _RS36445 BPHYT_RS36450: BPHYT_RS36450 - hypothetical protein, at 101,360 to 102,559 _RS36450 Position (kb) 100 101Strain fitness (log2 ratio) -2 -1 0 1 2 3at 99.639 kb on - strand, within BPHYT_RS36435at 99.722 kb on + strand, within BPHYT_RS36435at 100.402 kb on + strandat 100.778 kb on - strand, within BPHYT_RS36440at 100.781 kb on - strand, within BPHYT_RS36440at 100.823 kb on - strand, within BPHYT_RS36440at 100.956 kb on - strandat 100.956 kb on - strandat 101.558 kb on - strand, within BPHYT_RS36450at 101.558 kb on - strand, within BPHYT_RS36450at 101.558 kb on - strand, within BPHYT_RS36450at 101.558 kb on - strand, within BPHYT_RS36450at 101.636 kb on - strand, within BPHYT_RS36450

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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99,639 - BPHYT_RS36435 0.13 -1.1
99,722 + BPHYT_RS36435 0.37 +0.8
100,402 + +1.5
100,778 - BPHYT_RS36440 0.59 -2.1
100,781 - BPHYT_RS36440 0.60 -0.8
100,823 - BPHYT_RS36440 0.73 -0.6
100,956 - -2.5
100,956 - +0.2
101,558 - BPHYT_RS36450 0.17 +0.7
101,558 - BPHYT_RS36450 0.17 -0.6
101,558 - BPHYT_RS36450 0.17 +3.1
101,558 - BPHYT_RS36450 0.17 +0.1
101,636 - BPHYT_RS36450 0.23 -1.0

Or see this region's nucleotide sequence