Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02145 and BPHYT_RS02150 are separated by 93 nucleotides BPHYT_RS02150 and BPHYT_RS02155 are separated by 33 nucleotides BPHYT_RS02155 and BPHYT_RS02160 overlap by 4 nucleotides
BPHYT_RS02145: BPHYT_RS02145 - sulfate ABC transporter substrate-binding protein, at 491,156 to 492,181
_RS02145
BPHYT_RS02150: BPHYT_RS02150 - biotin synthase, at 492,275 to 493,360
_RS02150
BPHYT_RS02155: BPHYT_RS02155 - dithiobiotin synthetase, at 493,394 to 494,137
_RS02155
BPHYT_RS02160: BPHYT_RS02160 - 8-amino-7-oxononanoate synthase, at 494,134 to 495,318
_RS02160
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 491.291 kb on + strand, within BPHYT_RS02145 at 491.292 kb on - strand, within BPHYT_RS02145 at 491.324 kb on + strand, within BPHYT_RS02145 at 491.421 kb on + strand, within BPHYT_RS02145 at 491.421 kb on + strand, within BPHYT_RS02145 at 491.649 kb on - strand, within BPHYT_RS02145 at 491.654 kb on + strand, within BPHYT_RS02145 at 491.967 kb on - strand, within BPHYT_RS02145 at 492.179 kb on + strand at 492.254 kb on + strand at 492.264 kb on + strand at 492.265 kb on - strand at 492.265 kb on - strand at 492.271 kb on - strand at 492.271 kb on - strand at 492.271 kb on - strand at 492.304 kb on + strand at 492.778 kb on - strand, within BPHYT_RS02150 at 492.837 kb on + strand, within BPHYT_RS02150 at 492.926 kb on + strand, within BPHYT_RS02150 at 493.374 kb on - strand at 493.383 kb on + strand at 493.384 kb on - strand at 493.384 kb on - strand at 493.395 kb on + strand at 493.521 kb on + strand, within BPHYT_RS02155 at 493.522 kb on - strand, within BPHYT_RS02155 at 493.825 kb on + strand, within BPHYT_RS02155 at 493.825 kb on + strand, within BPHYT_RS02155 at 493.825 kb on + strand, within BPHYT_RS02155 at 493.897 kb on - strand, within BPHYT_RS02155 at 493.964 kb on - strand, within BPHYT_RS02155 at 493.970 kb on + strand, within BPHYT_RS02155 at 494.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 491,291 + BPHYT_RS02145 0.13 +0.2 491,292 - BPHYT_RS02145 0.13 -0.7 491,324 + BPHYT_RS02145 0.16 -0.8 491,421 + BPHYT_RS02145 0.26 +1.2 491,421 + BPHYT_RS02145 0.26 +0.2 491,649 - BPHYT_RS02145 0.48 -2.3 491,654 + BPHYT_RS02145 0.49 +0.5 491,967 - BPHYT_RS02145 0.79 +0.1 492,179 + -1.4 492,254 + +1.1 492,264 + -0.1 492,265 - -0.5 492,265 - +0.3 492,271 - -0.6 492,271 - -0.1 492,271 - +1.6 492,304 + -0.7 492,778 - BPHYT_RS02150 0.46 +1.2 492,837 + BPHYT_RS02150 0.52 +1.4 492,926 + BPHYT_RS02150 0.60 +1.9 493,374 - +0.0 493,383 + +1.6 493,384 - -0.3 493,384 - -0.1 493,395 + +0.2 493,521 + BPHYT_RS02155 0.17 +0.4 493,522 - BPHYT_RS02155 0.17 -0.3 493,825 + BPHYT_RS02155 0.58 +1.6 493,825 + BPHYT_RS02155 0.58 +3.6 493,825 + BPHYT_RS02155 0.58 -0.0 493,897 - BPHYT_RS02155 0.68 +0.2 493,964 - BPHYT_RS02155 0.77 +2.2 493,970 + BPHYT_RS02155 0.77 +0.8 494,106 - +0.4
Or see this region's nucleotide sequence