Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0151

Experiment: KB with Oxymatrine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0150 and Psyr_0151 overlap by 4 nucleotidesPsyr_0151 and Psyr_0152 overlap by 4 nucleotides Psyr_0150: Psyr_0150 - Acetylornithine deacetylase (ArgE), at 162,761 to 163,918 _0150 Psyr_0151: Psyr_0151 - FAD dependent oxidoreductase, at 163,915 to 165,084 _0151 Psyr_0152: Psyr_0152 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase:BFD-like [2Fe-2S]-binding region, at 165,081 to 166,490 _0152 Position (kb) 163 164 165 166Strain fitness (log2 ratio) -2 -1 0 1 2 3at 162.927 kb on + strand, within Psyr_0150at 162.928 kb on - strand, within Psyr_0150at 162.928 kb on - strand, within Psyr_0150at 163.076 kb on + strand, within Psyr_0150at 163.076 kb on + strand, within Psyr_0150at 163.077 kb on - strand, within Psyr_0150at 163.217 kb on + strand, within Psyr_0150at 163.218 kb on - strand, within Psyr_0150at 163.218 kb on - strand, within Psyr_0150at 163.218 kb on - strand, within Psyr_0150at 163.218 kb on - strand, within Psyr_0150at 163.227 kb on + strand, within Psyr_0150at 163.227 kb on + strand, within Psyr_0150at 163.227 kb on + strand, within Psyr_0150at 163.457 kb on + strand, within Psyr_0150at 163.458 kb on - strand, within Psyr_0150at 163.458 kb on - strand, within Psyr_0150at 163.629 kb on + strand, within Psyr_0150at 163.629 kb on + strand, within Psyr_0150at 163.630 kb on - strand, within Psyr_0150at 163.630 kb on - strand, within Psyr_0150at 163.630 kb on - strand, within Psyr_0150at 163.630 kb on - strand, within Psyr_0150at 163.833 kb on + strandat 163.834 kb on - strandat 163.834 kb on - strandat 163.926 kb on + strandat 163.927 kb on - strandat 164.087 kb on + strand, within Psyr_0151at 164.087 kb on + strand, within Psyr_0151at 164.087 kb on + strand, within Psyr_0151at 164.087 kb on + strand, within Psyr_0151at 164.088 kb on - strand, within Psyr_0151at 164.088 kb on - strand, within Psyr_0151at 164.088 kb on - strand, within Psyr_0151at 164.088 kb on - strand, within Psyr_0151at 164.088 kb on - strand, within Psyr_0151at 164.088 kb on - strand, within Psyr_0151at 164.088 kb on - strand, within Psyr_0151at 164.250 kb on - strand, within Psyr_0151at 164.330 kb on + strand, within Psyr_0151at 164.330 kb on + strand, within Psyr_0151at 164.330 kb on + strand, within Psyr_0151at 164.330 kb on + strand, within Psyr_0151at 164.331 kb on - strand, within Psyr_0151at 164.666 kb on + strand, within Psyr_0151at 164.667 kb on - strand, within Psyr_0151at 164.729 kb on + strand, within Psyr_0151at 164.729 kb on + strand, within Psyr_0151at 164.729 kb on + strand, within Psyr_0151at 164.729 kb on + strand, within Psyr_0151at 164.729 kb on + strand, within Psyr_0151at 164.729 kb on + strand, within Psyr_0151at 164.730 kb on - strand, within Psyr_0151at 164.771 kb on + strand, within Psyr_0151at 164.771 kb on + strand, within Psyr_0151at 164.772 kb on - strand, within Psyr_0151at 164.772 kb on - strand, within Psyr_0151at 164.772 kb on - strand, within Psyr_0151at 164.772 kb on - strand, within Psyr_0151at 165.058 kb on + strandat 165.058 kb on + strandat 165.058 kb on + strandat 165.058 kb on + strandat 165.058 kb on + strandat 165.058 kb on + strandat 165.058 kb on + strandat 165.058 kb on + strandat 165.058 kb on + strandat 165.058 kb on + strandat 165.058 kb on + strandat 165.059 kb on - strandat 165.059 kb on - strandat 165.059 kb on - strandat 165.059 kb on - strandat 165.059 kb on - strandat 165.059 kb on - strandat 165.059 kb on - strandat 165.059 kb on - strandat 165.059 kb on - strandat 165.061 kb on + strandat 165.061 kb on + strandat 165.061 kb on + strandat 165.061 kb on + strandat 165.061 kb on + strandat 165.061 kb on + strandat 165.061 kb on + strandat 165.061 kb on + strandat 165.062 kb on - strandat 165.062 kb on - strandat 165.062 kb on - strandat 165.062 kb on - strandat 165.062 kb on - strandat 165.453 kb on - strand, within Psyr_0152at 165.575 kb on + strand, within Psyr_0152at 165.575 kb on + strand, within Psyr_0152at 165.575 kb on + strand, within Psyr_0152at 165.576 kb on - strand, within Psyr_0152at 165.576 kb on - strand, within Psyr_0152at 165.576 kb on - strand, within Psyr_0152at 165.630 kb on + strand, within Psyr_0152at 165.631 kb on - strand, within Psyr_0152at 165.820 kb on + strand, within Psyr_0152at 165.820 kb on + strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.952 kb on + strand, within Psyr_0152at 165.953 kb on - strand, within Psyr_0152at 165.970 kb on + strand, within Psyr_0152at 165.970 kb on + strand, within Psyr_0152at 165.970 kb on + strand, within Psyr_0152at 165.970 kb on + strand, within Psyr_0152at 165.971 kb on - strand, within Psyr_0152at 166.060 kb on + strand, within Psyr_0152at 166.060 kb on + strand, within Psyr_0152at 166.061 kb on - strand, within Psyr_0152at 166.061 kb on - strand, within Psyr_0152at 166.061 kb on - strand, within Psyr_0152at 166.061 kb on - strand, within Psyr_0152

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Oxymatrine 10 mM
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162,927 + Psyr_0150 0.14 +0.2
162,928 - Psyr_0150 0.14 +1.2
162,928 - Psyr_0150 0.14 +0.2
163,076 + Psyr_0150 0.27 -0.0
163,076 + Psyr_0150 0.27 +0.3
163,077 - Psyr_0150 0.27 +0.2
163,217 + Psyr_0150 0.39 -0.3
163,218 - Psyr_0150 0.39 -0.4
163,218 - Psyr_0150 0.39 -1.1
163,218 - Psyr_0150 0.39 -0.1
163,218 - Psyr_0150 0.39 +1.0
163,227 + Psyr_0150 0.40 -0.0
163,227 + Psyr_0150 0.40 -0.0
163,227 + Psyr_0150 0.40 -1.7
163,457 + Psyr_0150 0.60 +0.3
163,458 - Psyr_0150 0.60 -0.5
163,458 - Psyr_0150 0.60 +0.5
163,629 + Psyr_0150 0.75 -1.0
163,629 + Psyr_0150 0.75 -0.7
163,630 - Psyr_0150 0.75 +0.1
163,630 - Psyr_0150 0.75 -0.3
163,630 - Psyr_0150 0.75 +1.1
163,630 - Psyr_0150 0.75 -0.5
163,833 + +0.3
163,834 - +0.4
163,834 - +0.6
163,926 + -0.1
163,927 - +3.1
164,087 + Psyr_0151 0.15 +1.3
164,087 + Psyr_0151 0.15 -0.3
164,087 + Psyr_0151 0.15 -0.5
164,087 + Psyr_0151 0.15 +1.1
164,088 - Psyr_0151 0.15 -0.1
164,088 - Psyr_0151 0.15 +0.3
164,088 - Psyr_0151 0.15 +0.7
164,088 - Psyr_0151 0.15 +0.0
164,088 - Psyr_0151 0.15 +1.3
164,088 - Psyr_0151 0.15 +0.4
164,088 - Psyr_0151 0.15 +0.4
164,250 - Psyr_0151 0.29 +0.5
164,330 + Psyr_0151 0.35 -0.1
164,330 + Psyr_0151 0.35 -1.4
164,330 + Psyr_0151 0.35 +0.2
164,330 + Psyr_0151 0.35 +0.4
164,331 - Psyr_0151 0.36 -0.3
164,666 + Psyr_0151 0.64 -0.5
164,667 - Psyr_0151 0.64 +0.3
164,729 + Psyr_0151 0.70 -0.3
164,729 + Psyr_0151 0.70 +0.8
164,729 + Psyr_0151 0.70 +0.8
164,729 + Psyr_0151 0.70 +0.9
164,729 + Psyr_0151 0.70 +0.2
164,729 + Psyr_0151 0.70 +0.6
164,730 - Psyr_0151 0.70 +0.6
164,771 + Psyr_0151 0.73 -0.3
164,771 + Psyr_0151 0.73 +1.2
164,772 - Psyr_0151 0.73 +0.7
164,772 - Psyr_0151 0.73 +0.7
164,772 - Psyr_0151 0.73 -0.6
164,772 - Psyr_0151 0.73 -0.9
165,058 + -0.6
165,058 + -0.2
165,058 + -0.1
165,058 + -2.0
165,058 + -1.0
165,058 + -0.3
165,058 + -1.1
165,058 + -0.9
165,058 + +0.9
165,058 + -0.5
165,058 + +0.5
165,059 - +0.9
165,059 - -0.3
165,059 - +1.2
165,059 - +0.2
165,059 - +0.1
165,059 - +0.7
165,059 - +0.1
165,059 - -0.4
165,059 - -0.7
165,061 + -0.8
165,061 + -0.3
165,061 + +0.3
165,061 + -0.2
165,061 + -1.5
165,061 + +1.0
165,061 + +1.0
165,061 + +1.5
165,062 - +0.2
165,062 - -0.0
165,062 - -0.4
165,062 - -0.8
165,062 - +0.7
165,453 - Psyr_0152 0.26 +0.9
165,575 + Psyr_0152 0.35 +1.2
165,575 + Psyr_0152 0.35 -0.7
165,575 + Psyr_0152 0.35 +1.1
165,576 - Psyr_0152 0.35 +0.7
165,576 - Psyr_0152 0.35 +0.4
165,576 - Psyr_0152 0.35 -0.1
165,630 + Psyr_0152 0.39 +0.4
165,631 - Psyr_0152 0.39 -1.1
165,820 + Psyr_0152 0.52 +0.1
165,820 + Psyr_0152 0.52 -1.1
165,821 - Psyr_0152 0.52 +0.4
165,821 - Psyr_0152 0.52 -0.4
165,821 - Psyr_0152 0.52 -0.1
165,821 - Psyr_0152 0.52 -0.6
165,821 - Psyr_0152 0.52 -0.9
165,821 - Psyr_0152 0.52 +0.2
165,952 + Psyr_0152 0.62 +0.1
165,953 - Psyr_0152 0.62 -0.1
165,970 + Psyr_0152 0.63 -1.2
165,970 + Psyr_0152 0.63 +0.5
165,970 + Psyr_0152 0.63 -0.1
165,970 + Psyr_0152 0.63 +1.5
165,971 - Psyr_0152 0.63 -0.1
166,060 + Psyr_0152 0.69 +0.3
166,060 + Psyr_0152 0.69 +0.3
166,061 - Psyr_0152 0.70 -0.8
166,061 - Psyr_0152 0.70 -0.0
166,061 - Psyr_0152 0.70 +0.5
166,061 - Psyr_0152 0.70 +0.0

Or see this region's nucleotide sequence