Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03125 and BPHYT_RS03130 are separated by 74 nucleotides BPHYT_RS03130 and BPHYT_RS03135 are separated by 74 nucleotides BPHYT_RS03135 and BPHYT_RS03140 overlap by 4 nucleotides BPHYT_RS03140 and BPHYT_RS03145 are separated by 23 nucleotides
BPHYT_RS03125: BPHYT_RS03125 - D-aminoacylase, at 699,193 to 700,674
_RS03125
BPHYT_RS03130: BPHYT_RS03130 - hypothetical protein, at 700,749 to 701,135
_RS03130
BPHYT_RS03135: BPHYT_RS03135 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 701,210 to 702,034
_RS03135
BPHYT_RS03140: BPHYT_RS03140 - 5'-nucleotidase, at 702,031 to 702,933
_RS03140
BPHYT_RS03145: BPHYT_RS03145 - threonine dehydratase, at 702,957 to 704,480
_RS03145
Position (kb) 701
702
703 Strain fitness (log2 ratio) -1
0
1
2 at 700.225 kb on + strand, within BPHYT_RS03125 at 700.360 kb on + strand, within BPHYT_RS03125 at 700.360 kb on + strand, within BPHYT_RS03125 at 700.360 kb on + strand, within BPHYT_RS03125 at 700.360 kb on + strand, within BPHYT_RS03125 at 700.433 kb on - strand, within BPHYT_RS03125 at 700.433 kb on - strand, within BPHYT_RS03125 at 700.461 kb on + strand, within BPHYT_RS03125 at 700.735 kb on + strand at 700.736 kb on - strand at 700.759 kb on - strand at 700.759 kb on - strand at 700.796 kb on + strand, within BPHYT_RS03130 at 701.031 kb on + strand, within BPHYT_RS03130 at 701.115 kb on + strand at 701.116 kb on - strand at 701.117 kb on + strand at 701.117 kb on + strand at 701.118 kb on - strand at 701.212 kb on - strand at 701.212 kb on - strand at 701.253 kb on + strand at 701.254 kb on - strand at 701.297 kb on - strand, within BPHYT_RS03135 at 701.298 kb on + strand, within BPHYT_RS03135 at 701.307 kb on + strand, within BPHYT_RS03135 at 701.307 kb on + strand, within BPHYT_RS03135 at 701.364 kb on - strand, within BPHYT_RS03135 at 701.580 kb on + strand, within BPHYT_RS03135 at 701.581 kb on - strand, within BPHYT_RS03135 at 701.581 kb on - strand, within BPHYT_RS03135 at 701.581 kb on - strand, within BPHYT_RS03135 at 701.581 kb on - strand, within BPHYT_RS03135 at 701.772 kb on + strand, within BPHYT_RS03135 at 701.880 kb on + strand, within BPHYT_RS03135 at 701.880 kb on + strand, within BPHYT_RS03135 at 701.881 kb on - strand, within BPHYT_RS03135 at 701.881 kb on - strand, within BPHYT_RS03135 at 701.982 kb on + strand at 701.983 kb on - strand at 702.265 kb on - strand, within BPHYT_RS03140 at 702.270 kb on + strand, within BPHYT_RS03140 at 702.270 kb on + strand, within BPHYT_RS03140 at 702.270 kb on + strand, within BPHYT_RS03140 at 702.271 kb on - strand, within BPHYT_RS03140 at 702.271 kb on - strand, within BPHYT_RS03140 at 702.271 kb on - strand, within BPHYT_RS03140 at 702.631 kb on + strand, within BPHYT_RS03140 at 702.632 kb on - strand, within BPHYT_RS03140 at 702.828 kb on - strand, within BPHYT_RS03140 at 702.851 kb on + strand at 702.954 kb on + strand at 702.954 kb on + strand at 702.955 kb on - strand at 702.955 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 700,225 + BPHYT_RS03125 0.70 +0.5 700,360 + BPHYT_RS03125 0.79 -0.4 700,360 + BPHYT_RS03125 0.79 +0.1 700,360 + BPHYT_RS03125 0.79 +0.2 700,360 + BPHYT_RS03125 0.79 -0.2 700,433 - BPHYT_RS03125 0.84 -0.9 700,433 - BPHYT_RS03125 0.84 +1.4 700,461 + BPHYT_RS03125 0.86 -0.7 700,735 + +0.1 700,736 - +1.7 700,759 - -0.3 700,759 - -0.2 700,796 + BPHYT_RS03130 0.12 +0.2 701,031 + BPHYT_RS03130 0.73 +0.2 701,115 + +0.3 701,116 - +0.2 701,117 + -0.5 701,117 + +0.8 701,118 - +1.5 701,212 - -0.1 701,212 - +0.0 701,253 + +1.2 701,254 - +0.5 701,297 - BPHYT_RS03135 0.11 +0.8 701,298 + BPHYT_RS03135 0.11 -0.5 701,307 + BPHYT_RS03135 0.12 +0.6 701,307 + BPHYT_RS03135 0.12 -1.2 701,364 - BPHYT_RS03135 0.19 +0.2 701,580 + BPHYT_RS03135 0.45 -0.0 701,581 - BPHYT_RS03135 0.45 -0.6 701,581 - BPHYT_RS03135 0.45 +1.2 701,581 - BPHYT_RS03135 0.45 +0.4 701,581 - BPHYT_RS03135 0.45 +0.2 701,772 + BPHYT_RS03135 0.68 -1.0 701,880 + BPHYT_RS03135 0.81 +0.7 701,880 + BPHYT_RS03135 0.81 +0.5 701,881 - BPHYT_RS03135 0.81 +1.2 701,881 - BPHYT_RS03135 0.81 -1.2 701,982 + -0.1 701,983 - -0.6 702,265 - BPHYT_RS03140 0.26 +0.3 702,270 + BPHYT_RS03140 0.26 +0.7 702,270 + BPHYT_RS03140 0.26 +1.2 702,270 + BPHYT_RS03140 0.26 +0.6 702,271 - BPHYT_RS03140 0.27 +0.1 702,271 - BPHYT_RS03140 0.27 +0.4 702,271 - BPHYT_RS03140 0.27 -0.4 702,631 + BPHYT_RS03140 0.66 +1.9 702,632 - BPHYT_RS03140 0.67 -0.1 702,828 - BPHYT_RS03140 0.88 +0.0 702,851 + -0.7 702,954 + -0.5 702,954 + -0.5 702,955 - +1.2 702,955 - -0.6
Or see this region's nucleotide sequence