Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3335

Experiment: KB with Cimicifugoside H1 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Cimicifugoside H1 10 mM
3,989,107	-		Psyr_3333	0.65	-0.6
3,989,229	-		Psyr_3333	0.75	-1.0
3,989,229	-		Psyr_3333	0.75	+0.2
3,989,229	-		Psyr_3333	0.75	-0.4
3,989,284	+		Psyr_3333	0.79	-1.5
3,989,320	+		Psyr_3333	0.82	-2.3
3,989,320	+		Psyr_3333	0.82	-0.6
3,989,320	+		Psyr_3333	0.82	-2.0
3,989,320	+		Psyr_3333	0.82	-0.3
3,989,320	+		Psyr_3333	0.82	+0.7
3,989,320	+		Psyr_3333	0.82	-1.1
3,989,321	-		Psyr_3333	0.82	+0.2
3,989,321	-		Psyr_3333	0.82	-0.8
3,989,321	-		Psyr_3333	0.82	-0.4
3,989,321	-		Psyr_3333	0.82	-1.5
3,989,321	-		Psyr_3333	0.82	+0.2
3,989,321	-		Psyr_3333	0.82	-0.6
3,989,321	-		Psyr_3333	0.82	-0.8
3,989,321	-		Psyr_3333	0.82	+1.9
3,989,321	-		Psyr_3333	0.82	-0.5
3,989,321	-		Psyr_3333	0.82	+0.7
3,989,343	+		Psyr_3333	0.84	+0.4
3,989,343	+		Psyr_3333	0.84	+1.0
3,989,343	+		Psyr_3333	0.84	-0.9
3,989,343	+		Psyr_3333	0.84	-0.3
3,989,343	+		Psyr_3333	0.84	+1.0
3,989,343	+		Psyr_3333	0.84	+1.2
3,989,343	+		Psyr_3333	0.84	-1.8
3,989,344	-		Psyr_3333	0.84	+0.4
3,989,344	-		Psyr_3333	0.84	+1.0
3,989,344	-		Psyr_3333	0.84	+0.6
3,989,344	-		Psyr_3333	0.84	-0.0
3,989,344	-		Psyr_3333	0.84	+1.0
3,989,344	-		Psyr_3333	0.84	+2.1
3,989,542	+				+0.7
3,989,549	+				-0.5
3,989,737	+		Psyr_3334	0.40	+0.6
3,990,039	-				+0.6
3,990,074	+				-0.2
3,990,074	+				-1.0
3,990,074	+				-0.5
3,990,074	+				-0.2
3,990,074	+				+0.4
3,990,075	-				-1.8
3,990,075	-				+0.3
3,990,075	-				+0.2
3,990,075	-				+0.2
3,990,078	+				-1.9
3,990,078	+				-0.0
3,990,078	+				-0.4
3,990,078	+				+1.6
3,990,079	-				-1.8
3,990,079	-				-1.8
3,990,079	-				+0.3
3,990,079	-				-0.1
3,990,080	+				+1.0
3,990,080	+				+0.2
3,990,080	+				+0.5
3,990,080	+				-0.1
3,990,080	+				+1.0
3,990,080	+				-0.4
3,990,080	+				+2.6
3,990,080	+				-1.2
3,990,080	+				+0.1
3,990,080	+				+1.3
3,990,080	+				-0.9
3,990,080	+				-1.0
3,990,080	+				+0.6
3,990,080	+				+0.6
3,990,080	+				+0.5
3,990,080	+				-1.3
3,990,080	+				-0.3
3,990,080	+				-0.3
3,990,080	+				+0.5
3,990,080	+				-0.5
3,990,080	+				+3.1
3,990,080	+				+0.5
3,990,080	+				-2.2
3,990,080	+				+1.2
3,990,080	+				-0.0
3,990,080	+				+0.9
3,990,080	+				+0.7
3,990,080	+				-1.0
3,990,081	-				-1.1
3,990,081	-				-1.0
3,990,081	-				-0.8
3,990,081	-				-0.5
3,990,081	-				+1.0
3,990,081	-				-1.6
3,990,081	-				-0.9
3,990,081	-				+0.6
3,990,081	-				-2.0
3,990,081	-				-0.9
3,990,081	-				+0.1
3,990,081	-				-1.0
3,990,081	-				-0.0
3,990,081	-				-1.0
3,990,081	-				-0.2
3,990,081	-				-0.2
3,990,081	-				+2.1
3,990,081	-				-0.8
3,990,081	-				-0.3
3,990,081	-				-0.6
3,990,081	-				-0.3
3,990,081	-				-0.9
3,990,081	-				-0.1
3,990,081	-				+0.6
3,990,081	-				+0.1
3,990,081	-				-0.4
3,990,112	+				-0.1
3,990,112	+				-1.1
3,990,112	+				+1.0
3,990,112	+				+1.6
3,990,112	+				+1.0
3,990,112	+				-1.5
3,990,112	+				-0.1
3,990,125	+				-0.1
3,990,176	+		Psyr_3335	0.15	+0.0
3,990,176	+		Psyr_3335	0.15	-0.2
3,990,177	-		Psyr_3335	0.15	+1.6
3,990,177	-		Psyr_3335	0.15	+1.0
3,990,180	+		Psyr_3335	0.16	-0.6
3,990,181	-		Psyr_3335	0.16	+2.0
3,990,181	-		Psyr_3335	0.16	-0.5
3,990,186	+		Psyr_3335	0.16	-0.5
3,990,186	+		Psyr_3335	0.16	+0.3
3,990,186	+		Psyr_3335	0.16	+0.6
3,990,187	-		Psyr_3335	0.16	+0.4
3,990,187	-		Psyr_3335	0.16	+1.2
3,990,188	+		Psyr_3335	0.16	+1.0
3,990,188	+		Psyr_3335	0.16	-0.4
3,990,188	+		Psyr_3335	0.16	+0.0
3,990,188	+		Psyr_3335	0.16	+0.6
3,990,188	+		Psyr_3335	0.16	+1.0
3,990,188	+		Psyr_3335	0.16	-0.4
3,990,188	+		Psyr_3335	0.16	+0.8
3,990,189	-		Psyr_3335	0.17	+0.5
3,990,189	-		Psyr_3335	0.17	+0.9
3,990,189	-		Psyr_3335	0.17	-0.5
3,990,189	-		Psyr_3335	0.17	+0.2
3,990,189	-		Psyr_3335	0.17	-0.2
3,990,189	-		Psyr_3335	0.17	+0.4
3,990,189	-		Psyr_3335	0.17	-0.6
3,990,189	-		Psyr_3335	0.17	-1.6
3,990,189	-		Psyr_3335	0.17	-0.1
3,990,197	+		Psyr_3335	0.17	+1.3
3,990,203	+		Psyr_3335	0.18	+0.5
3,990,203	+		Psyr_3335	0.18	-0.4
3,990,204	-		Psyr_3335	0.18	-0.3
3,990,204	-		Psyr_3335	0.18	+0.6
3,990,204	-		Psyr_3335	0.18	+0.6
3,990,204	-		Psyr_3335	0.18	+0.3
3,990,302	+		Psyr_3335	0.28	+1.1
3,990,302	+		Psyr_3335	0.28	-0.3
3,990,302	+		Psyr_3335	0.28	-0.2
3,990,303	-		Psyr_3335	0.28	-0.3
3,990,303	-		Psyr_3335	0.28	+0.8
3,990,303	-		Psyr_3335	0.28	-0.0
3,990,303	-		Psyr_3335	0.28	+0.2
3,990,326	+		Psyr_3335	0.31	+0.4
3,990,326	+		Psyr_3335	0.31	-2.4
3,990,326	+		Psyr_3335	0.31	+0.1
3,990,326	+		Psyr_3335	0.31	+0.1
3,990,326	+		Psyr_3335	0.31	+0.8
3,990,326	+		Psyr_3335	0.31	-1.2
3,990,327	-		Psyr_3335	0.31	-0.6
3,990,327	-		Psyr_3335	0.31	-0.8
3,990,327	-		Psyr_3335	0.31	+0.2
3,990,327	-		Psyr_3335	0.31	-0.0
3,990,327	-		Psyr_3335	0.31	+1.4
3,990,327	-		Psyr_3335	0.31	+2.6
3,990,399	-		Psyr_3335	0.38	+0.6
3,990,545	+		Psyr_3335	0.53	+1.2
3,990,545	+		Psyr_3335	0.53	-0.0
3,990,545	+		Psyr_3335	0.53	-0.8
3,990,546	-		Psyr_3335	0.53	-0.4
3,990,546	-		Psyr_3335	0.53	-1.0
3,990,607	-		Psyr_3335	0.60	-1.2
3,990,658	+		Psyr_3335	0.65	+0.3
3,990,659	-				+1.0
3,990,659	-		Psyr_3335	0.65	-0.9
3,990,659	-		Psyr_3335	0.65	+0.6
3,990,695	+		Psyr_3335	0.69	+1.0
3,990,695	+		Psyr_3335	0.69	+1.6
3,990,695	+		Psyr_3335	0.69	+1.1
3,990,696	-		Psyr_3335	0.69	-0.6
3,990,696	-		Psyr_3335	0.69	+0.7
3,990,719	+		Psyr_3335	0.71	+0.7
3,990,719	+		Psyr_3335	0.71	+0.4
3,990,719	+		Psyr_3335	0.71	+0.9
3,990,720	-		Psyr_3335	0.71	-0.9
3,990,748	-		Psyr_3335	0.74	-0.4
3,990,842	+		Psyr_3335	0.84	-1.4
3,990,842	+		Psyr_3335	0.84	+0.6
3,990,842	+		Psyr_3335	0.84	-0.1
3,990,842	+		Psyr_3335	0.84	-2.5
3,990,842	+		Psyr_3335	0.84	-0.1
3,990,842	+		Psyr_3335	0.84	-2.3
3,990,842	+		Psyr_3335	0.84	+0.6
3,990,842	+		Psyr_3335	0.84	+1.8
3,990,842	+		Psyr_3335	0.84	+0.1
3,990,842	+		Psyr_3335	0.84	-0.2
3,990,842	+		Psyr_3335	0.84	+0.2
3,990,843	-		Psyr_3335	0.84	-0.8
3,990,843	-		Psyr_3335	0.84	+0.2
3,990,843	-		Psyr_3335	0.84	-0.2
3,990,843	-		Psyr_3335	0.84	+0.4
3,990,843	-		Psyr_3335	0.84	+0.0
3,990,843	-		Psyr_3335	0.84	+1.4
3,990,843	-		Psyr_3335	0.84	+1.0
3,990,843	-		Psyr_3335	0.84	-0.8
3,990,843	-		Psyr_3335	0.84	+1.1
3,990,843	-		Psyr_3335	0.84	+2.0
3,990,843	-		Psyr_3335	0.84	-0.9
3,990,843	-		Psyr_3335	0.84	+0.4
3,990,843	-		Psyr_3335	0.84	-0.4
3,990,843	-		Psyr_3335	0.84	+0.5
3,990,883	+		Psyr_3335	0.88	-0.8
3,991,016	+				-0.0
3,991,016	+				+0.1
3,991,016	+				-0.5
3,991,017	-				-3.0
3,991,017	-				+3.3
3,991,025	+				-0.3
3,991,025	+				+0.1
3,991,046	+				+0.0
3,991,046	+				+0.8
3,991,047	-				-0.0
3,991,047	-				-0.2
3,991,050	+				-1.4
3,991,050	+				-0.3
3,991,051	-				+1.2
3,991,051	-				+0.7
3,991,058	+				-1.2
3,991,058	+				+0.1
3,991,058	+				-0.0
3,991,058	+				-1.2
3,991,058	+				+0.2
3,991,058	+				+0.1
3,991,058	+				-1.1
3,991,058	+				+0.1
3,991,058	+				+1.0
3,991,058	+				-0.4
3,991,058	+				-1.4
3,991,058	+				-1.6
3,991,058	+				+0.2
3,991,058	+				-0.4
3,991,058	+				+0.3
3,991,059	-				-0.0
3,991,059	-				-0.0
3,991,059	-				-0.2
3,991,059	-				+1.0
3,991,059	-				-0.3
3,991,059	-				-2.9
3,991,059	-				+1.0
3,991,059	-				+1.4
3,991,059	-				+0.1
3,991,059	-				-1.4
3,991,059	-				+0.6
3,991,059	-				-0.9
3,991,059	-				-2.1
3,991,060	+				+0.2
3,991,060	+				-0.6
3,991,061	-				-0.3
3,991,061	-				-0.7
3,991,094	+				+0.9
3,991,094	+				+0.6
3,991,094	+				-0.1
3,991,094	+				+0.5
3,991,094	+				-0.0
3,991,095	-				+1.7
3,991,095	-				-0.2
3,991,095	-				+0.6
3,991,095	-				-1.0
3,991,118	-				+0.7
3,991,130	+				+0.3
3,991,131	-				+0.3
3,991,131	-				+1.1
3,991,151	+				+0.8
3,991,163	+				+0.1
3,991,164	-				+0.4
3,991,164	-				-1.4
3,991,270	+				-0.2
3,991,410	-				+0.5
3,991,773	+		Psyr_3336	0.44	+0.1
3,991,773	+		Psyr_3336	0.44	-0.7
3,991,773	+		Psyr_3336	0.44	-0.8
3,991,774	-		Psyr_3336	0.44	-0.3
3,991,774	-		Psyr_3336	0.44	-0.1
3,991,774	-		Psyr_3336	0.44	-2.7
3,991,774	-		Psyr_3336	0.44	-1.1
3,991,898	+		Psyr_3336	0.56	-1.3
3,991,898	+		Psyr_3336	0.56	-0.2
3,991,899	-		Psyr_3336	0.56	+0.5
3,991,900	+		Psyr_3336	0.56	-0.6
3,991,900	+		Psyr_3336	0.56	-0.3
3,991,901	-		Psyr_3336	0.56	-0.2
3,991,961	-		Psyr_3336	0.62	+0.2