Experiment: KB with Cimicifugoside H1 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0737 and Psyr_0738 are separated by 794 nucleotides Psyr_0738 and Psyr_0739 are separated by 331 nucleotides
Psyr_0737: Psyr_0737 - putative transmembrane protein, at 841,367 to 841,780
_0737
Psyr_0738: Psyr_0738 - type III effector protein AvrRpm1, at 842,575 to 843,261
_0738
Psyr_0739: Psyr_0739 - CDS, at 843,593 to 844,246
_0739
Position (kb) 842
843
844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 841.575 kb on - strand, within Psyr_0737 at 841.575 kb on - strand, within Psyr_0737 at 841.640 kb on - strand, within Psyr_0737 at 841.641 kb on + strand, within Psyr_0737 at 841.641 kb on + strand, within Psyr_0737 at 841.641 kb on + strand, within Psyr_0737 at 841.642 kb on - strand, within Psyr_0737 at 841.716 kb on + strand, within Psyr_0737 at 841.784 kb on - strand at 841.880 kb on + strand at 841.881 kb on - strand at 841.885 kb on - strand at 841.895 kb on - strand at 841.965 kb on - strand at 842.014 kb on + strand at 842.024 kb on + strand at 842.024 kb on + strand at 842.144 kb on - strand at 842.189 kb on + strand at 842.207 kb on - strand at 842.207 kb on - strand at 842.212 kb on - strand at 842.212 kb on - strand at 842.212 kb on - strand at 842.212 kb on - strand at 842.236 kb on + strand at 842.236 kb on + strand at 842.236 kb on + strand at 842.315 kb on + strand at 842.372 kb on + strand at 842.372 kb on + strand at 842.373 kb on - strand at 842.378 kb on - strand at 842.378 kb on - strand at 842.403 kb on + strand at 842.403 kb on + strand at 842.404 kb on - strand at 842.440 kb on + strand at 842.474 kb on + strand at 842.474 kb on + strand at 842.475 kb on - strand at 842.475 kb on - strand at 842.493 kb on + strand at 842.494 kb on - strand at 842.830 kb on + strand, within Psyr_0738 at 842.830 kb on + strand, within Psyr_0738 at 842.871 kb on + strand, within Psyr_0738 at 842.927 kb on + strand, within Psyr_0738 at 842.927 kb on + strand, within Psyr_0738 at 842.927 kb on + strand, within Psyr_0738 at 842.927 kb on + strand, within Psyr_0738 at 842.927 kb on + strand, within Psyr_0738 at 842.928 kb on - strand, within Psyr_0738 at 842.974 kb on - strand, within Psyr_0738 at 842.979 kb on + strand, within Psyr_0738 at 842.980 kb on - strand, within Psyr_0738 at 842.980 kb on - strand, within Psyr_0738 at 842.980 kb on - strand, within Psyr_0738 at 843.019 kb on - strand, within Psyr_0738 at 843.049 kb on + strand, within Psyr_0738 at 843.049 kb on + strand, within Psyr_0738 at 843.049 kb on + strand, within Psyr_0738 at 843.069 kb on + strand, within Psyr_0738 at 843.069 kb on + strand, within Psyr_0738 at 843.070 kb on - strand, within Psyr_0738 at 843.095 kb on + strand, within Psyr_0738 at 843.095 kb on + strand, within Psyr_0738 at 843.095 kb on + strand, within Psyr_0738 at 843.221 kb on + strand at 843.222 kb on - strand at 843.224 kb on + strand at 843.225 kb on - strand at 843.244 kb on - strand at 843.244 kb on - strand at 843.261 kb on + strand at 843.283 kb on + strand at 843.284 kb on - strand at 843.284 kb on - strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.374 kb on + strand at 843.382 kb on - strand at 843.389 kb on + strand at 843.389 kb on + strand at 843.389 kb on + strand at 843.389 kb on + strand at 843.390 kb on - strand at 843.390 kb on - strand at 843.455 kb on - strand at 843.552 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.561 kb on - strand at 843.561 kb on - strand at 843.561 kb on - strand at 843.566 kb on - strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.586 kb on - strand at 843.586 kb on - strand at 843.628 kb on + strand at 843.628 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.749 kb on + strand, within Psyr_0739 at 843.749 kb on + strand, within Psyr_0739 at 843.756 kb on + strand, within Psyr_0739 at 843.756 kb on + strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.808 kb on - strand, within Psyr_0739 at 843.808 kb on - strand, within Psyr_0739 at 844.020 kb on + strand, within Psyr_0739 at 844.059 kb on - strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.104 kb on - strand, within Psyr_0739 at 844.203 kb on + strand at 844.203 kb on + strand at 844.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Cimicifugoside H1 10 mM remove 841,575 - Psyr_0737 0.50 +0.4 841,575 - Psyr_0737 0.50 +0.8 841,640 - Psyr_0737 0.66 -0.9 841,641 + Psyr_0737 0.66 -1.9 841,641 + Psyr_0737 0.66 +0.1 841,641 + Psyr_0737 0.66 -3.3 841,642 - Psyr_0737 0.66 +0.7 841,716 + Psyr_0737 0.84 -0.1 841,784 - +0.3 841,880 + -0.3 841,881 - -0.3 841,885 - -0.4 841,895 - -1.2 841,965 - -0.9 842,014 + -0.3 842,024 + -0.4 842,024 + -0.9 842,144 - -0.8 842,189 + -0.8 842,207 - +0.0 842,207 - -2.0 842,212 - -0.0 842,212 - -1.6 842,212 - -0.2 842,212 - +0.1 842,236 + -0.4 842,236 + -0.1 842,236 + +1.1 842,315 + -0.6 842,372 + +1.1 842,372 + +0.5 842,373 - -1.0 842,378 - -0.4 842,378 - +1.1 842,403 + +0.9 842,403 + +0.5 842,404 - +0.1 842,440 + +1.6 842,474 + -0.9 842,474 + -0.6 842,475 - +0.5 842,475 - -0.3 842,493 + -0.9 842,494 - -0.1 842,830 + Psyr_0738 0.37 -0.4 842,830 + Psyr_0738 0.37 +0.6 842,871 + Psyr_0738 0.43 -2.8 842,927 + Psyr_0738 0.51 +0.1 842,927 + Psyr_0738 0.51 -0.0 842,927 + Psyr_0738 0.51 -0.9 842,927 + Psyr_0738 0.51 +0.4 842,927 + Psyr_0738 0.51 -1.0 842,928 - Psyr_0738 0.51 -0.1 842,974 - Psyr_0738 0.58 -2.2 842,979 + Psyr_0738 0.59 +0.3 842,980 - Psyr_0738 0.59 +0.0 842,980 - Psyr_0738 0.59 -1.5 842,980 - Psyr_0738 0.59 -0.7 843,019 - Psyr_0738 0.65 +0.6 843,049 + Psyr_0738 0.69 +0.9 843,049 + Psyr_0738 0.69 -0.6 843,049 + Psyr_0738 0.69 -0.0 843,069 + Psyr_0738 0.72 -1.0 843,069 + Psyr_0738 0.72 -0.6 843,070 - Psyr_0738 0.72 -0.7 843,095 + Psyr_0738 0.76 -0.4 843,095 + Psyr_0738 0.76 -1.4 843,095 + Psyr_0738 0.76 -0.1 843,221 + -1.2 843,222 - -0.3 843,224 + -1.1 843,225 - -1.2 843,244 - +0.3 843,244 - +0.4 843,261 + -1.9 843,283 + -0.1 843,284 - -0.1 843,284 - +0.1 843,312 + -1.3 843,312 + +0.6 843,374 + -1.4 843,382 - +1.3 843,389 + +0.1 843,389 + +0.6 843,389 + -1.0 843,389 + -0.4 843,390 - -0.1 843,390 - -1.3 843,455 - -0.0 843,552 - +2.9 843,556 - -1.7 843,556 - -0.8 843,556 - -0.1 843,556 - -3.0 843,561 - +0.0 843,561 - -0.5 843,561 - +0.5 843,566 - +0.1 843,585 + +0.9 843,585 + -0.3 843,586 - +0.6 843,586 - -0.2 843,628 + -0.4 843,628 + -0.2 843,638 + +0.5 843,638 + +0.4 843,638 + +2.3 843,638 + +0.7 843,639 - -0.1 843,639 - -0.7 843,639 - +1.5 843,639 - -1.2 843,749 + Psyr_0739 0.24 +0.1 843,749 + Psyr_0739 0.24 -1.2 843,756 + Psyr_0739 0.25 +0.9 843,756 + Psyr_0739 0.25 -0.2 843,757 - Psyr_0739 0.25 +0.1 843,757 - Psyr_0739 0.25 -0.3 843,757 - Psyr_0739 0.25 +0.3 843,757 - Psyr_0739 0.25 -0.0 843,808 - Psyr_0739 0.33 -1.3 843,808 - Psyr_0739 0.33 -1.3 844,020 + Psyr_0739 0.65 +0.3 844,059 - Psyr_0739 0.71 -0.0 844,103 + Psyr_0739 0.78 +0.4 844,103 + Psyr_0739 0.78 -0.3 844,103 + Psyr_0739 0.78 +0.5 844,104 - Psyr_0739 0.78 -0.5 844,203 + +0.0 844,203 + +0.2 844,228 + +2.1
Or see this region's nucleotide sequence