Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0422

Experiment: KB with Cimicifugoside H1 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0421 and Psyr_0422 are separated by 236 nucleotidesPsyr_0422 and Psyr_0423 overlap by 1 nucleotidesPsyr_0423 and Psyr_0424 overlap by 4 nucleotides Psyr_0421: Psyr_0421 - transcriptional regulator, LysR family, at 460,420 to 461,310 _0421 Psyr_0422: Psyr_0422 - Beta-ketoacyl synthase:Beta-ketoacyl synthase, at 461,547 to 462,773 _0422 Psyr_0423: Psyr_0423 - 3-oxoacyl-(acyl-carrier-protein) reductase, putative, at 462,773 to 463,501 _0423 Psyr_0424: Psyr_0424 - conserved hypothetical protein, at 463,498 to 463,953 _0424 Position (kb) 461 462 463Strain fitness (log2 ratio) -2 -1 0 1 2 3at 460.728 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 461.020 kb on + strand, within Psyr_0421at 461.020 kb on + strand, within Psyr_0421at 461.021 kb on - strand, within Psyr_0421at 461.021 kb on - strand, within Psyr_0421at 461.031 kb on + strand, within Psyr_0421at 461.032 kb on - strand, within Psyr_0421at 461.035 kb on + strand, within Psyr_0421at 461.035 kb on + strand, within Psyr_0421at 461.035 kb on + strand, within Psyr_0421at 461.036 kb on - strand, within Psyr_0421at 461.303 kb on + strandat 461.303 kb on + strandat 461.303 kb on + strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.376 kb on + strandat 461.376 kb on + strandat 461.377 kb on - strandat 461.468 kb on + strandat 461.496 kb on + strandat 461.496 kb on + strandat 461.496 kb on + strandat 461.496 kb on + strandat 461.496 kb on + strandat 461.496 kb on + strandat 461.496 kb on + strandat 461.542 kb on + strandat 461.614 kb on + strandat 461.614 kb on + strandat 461.615 kb on - strandat 461.615 kb on - strandat 461.650 kb on + strandat 461.650 kb on + strandat 461.650 kb on + strandat 461.651 kb on - strandat 461.651 kb on - strandat 461.702 kb on + strand, within Psyr_0422at 461.703 kb on - strand, within Psyr_0422at 461.704 kb on + strand, within Psyr_0422at 461.704 kb on + strand, within Psyr_0422at 461.704 kb on + strand, within Psyr_0422at 461.705 kb on - strand, within Psyr_0422at 461.705 kb on - strand, within Psyr_0422at 461.705 kb on - strand, within Psyr_0422at 461.795 kb on + strand, within Psyr_0422at 461.795 kb on + strand, within Psyr_0422at 461.795 kb on + strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.884 kb on + strand, within Psyr_0422at 462.013 kb on + strand, within Psyr_0422at 462.014 kb on - strand, within Psyr_0422at 462.014 kb on - strand, within Psyr_0422at 462.158 kb on - strand, within Psyr_0422at 462.250 kb on + strand, within Psyr_0422at 462.250 kb on + strand, within Psyr_0422at 462.250 kb on + strand, within Psyr_0422at 462.250 kb on + strand, within Psyr_0422at 462.250 kb on + strand, within Psyr_0422at 462.251 kb on - strand, within Psyr_0422at 462.251 kb on - strand, within Psyr_0422at 462.281 kb on + strand, within Psyr_0422at 462.329 kb on + strand, within Psyr_0422at 462.329 kb on + strand, within Psyr_0422at 462.329 kb on + strand, within Psyr_0422at 462.329 kb on + strand, within Psyr_0422at 462.330 kb on - strand, within Psyr_0422at 462.330 kb on - strand, within Psyr_0422at 462.370 kb on + strand, within Psyr_0422at 462.370 kb on + strand, within Psyr_0422at 462.370 kb on + strand, within Psyr_0422at 462.370 kb on + strand, within Psyr_0422at 462.371 kb on - strand, within Psyr_0422at 462.371 kb on - strand, within Psyr_0422at 462.371 kb on - strand, within Psyr_0422at 462.371 kb on - strand, within Psyr_0422at 462.371 kb on - strand, within Psyr_0422at 462.636 kb on - strand, within Psyr_0422at 462.816 kb on + strandat 462.816 kb on + strandat 462.816 kb on + strandat 462.816 kb on + strandat 462.816 kb on + strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 463.022 kb on - strand, within Psyr_0423at 463.044 kb on + strand, within Psyr_0423at 463.044 kb on + strand, within Psyr_0423at 463.045 kb on - strand, within Psyr_0423at 463.112 kb on - strand, within Psyr_0423at 463.153 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.258 kb on - strand, within Psyr_0423at 463.260 kb on + strand, within Psyr_0423at 463.261 kb on - strand, within Psyr_0423at 463.523 kb on + strandat 463.547 kb on + strand, within Psyr_0424at 463.548 kb on - strand, within Psyr_0424at 463.548 kb on - strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cimicifugoside H1 10 mM
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460,728 + Psyr_0421 0.35 +1.0
460,972 + Psyr_0421 0.62 +0.6
460,972 + Psyr_0421 0.62 +0.6
460,972 + Psyr_0421 0.62 -0.6
460,972 + Psyr_0421 0.62 +0.6
460,972 + Psyr_0421 0.62 +0.5
460,972 + Psyr_0421 0.62 -0.3
460,972 + Psyr_0421 0.62 +0.1
460,972 + Psyr_0421 0.62 +0.5
460,973 - Psyr_0421 0.62 +0.4
460,973 - Psyr_0421 0.62 -0.1
460,973 - Psyr_0421 0.62 -0.6
460,973 - Psyr_0421 0.62 -1.9
460,973 - Psyr_0421 0.62 -0.1
460,973 - Psyr_0421 0.62 -0.9
460,973 - Psyr_0421 0.62 +0.4
460,973 - Psyr_0421 0.62 +0.7
460,973 - Psyr_0421 0.62 +0.6
460,973 - Psyr_0421 0.62 +1.3
460,973 - Psyr_0421 0.62 -1.1
460,973 - Psyr_0421 0.62 +0.1
460,973 - Psyr_0421 0.62 +0.1
461,020 + Psyr_0421 0.67 +1.6
461,020 + Psyr_0421 0.67 -0.5
461,021 - Psyr_0421 0.67 -0.4
461,021 - Psyr_0421 0.67 -0.7
461,031 + Psyr_0421 0.69 -0.7
461,032 - Psyr_0421 0.69 -0.3
461,035 + Psyr_0421 0.69 +1.1
461,035 + Psyr_0421 0.69 +0.5
461,035 + Psyr_0421 0.69 +0.5
461,036 - Psyr_0421 0.69 -0.8
461,303 + +0.7
461,303 + -1.2
461,303 + -1.3
461,304 - -0.3
461,304 - +0.5
461,304 - +0.7
461,304 - -0.9
461,304 - +1.0
461,304 - +0.0
461,304 - +0.8
461,304 - +0.6
461,376 + +0.4
461,376 + -0.1
461,377 - -0.5
461,468 + -0.0
461,496 + -0.5
461,496 + -1.3
461,496 + +0.3
461,496 + -0.4
461,496 + +0.5
461,496 + -0.9
461,496 + +0.1
461,542 + -1.9
461,614 + +0.1
461,614 + +0.3
461,615 - -0.9
461,615 - +0.1
461,650 + +1.0
461,650 + -0.4
461,650 + +0.4
461,651 - +0.2
461,651 - -1.1
461,702 + Psyr_0422 0.13 +0.5
461,703 - Psyr_0422 0.13 +0.7
461,704 + Psyr_0422 0.13 -0.5
461,704 + Psyr_0422 0.13 -1.9
461,704 + Psyr_0422 0.13 -0.0
461,705 - Psyr_0422 0.13 +0.1
461,705 - Psyr_0422 0.13 +0.6
461,705 - Psyr_0422 0.13 +0.0
461,795 + Psyr_0422 0.20 -0.7
461,795 + Psyr_0422 0.20 +0.6
461,795 + Psyr_0422 0.20 +0.6
461,796 - Psyr_0422 0.20 -0.4
461,796 - Psyr_0422 0.20 +0.8
461,796 - Psyr_0422 0.20 +0.3
461,796 - Psyr_0422 0.20 +0.0
461,796 - Psyr_0422 0.20 +0.4
461,796 - Psyr_0422 0.20 +0.3
461,796 - Psyr_0422 0.20 -0.1
461,884 + Psyr_0422 0.27 -0.3
462,013 + Psyr_0422 0.38 +2.8
462,014 - Psyr_0422 0.38 +0.8
462,014 - Psyr_0422 0.38 +1.3
462,158 - Psyr_0422 0.50 +1.5
462,250 + Psyr_0422 0.57 -1.5
462,250 + Psyr_0422 0.57 -0.9
462,250 + Psyr_0422 0.57 +1.2
462,250 + Psyr_0422 0.57 -0.1
462,250 + Psyr_0422 0.57 -0.3
462,251 - Psyr_0422 0.57 -0.3
462,251 - Psyr_0422 0.57 +1.3
462,281 + Psyr_0422 0.60 +0.7
462,329 + Psyr_0422 0.64 -0.9
462,329 + Psyr_0422 0.64 -0.3
462,329 + Psyr_0422 0.64 +0.5
462,329 + Psyr_0422 0.64 -0.2
462,330 - Psyr_0422 0.64 -0.1
462,330 - Psyr_0422 0.64 +1.3
462,370 + Psyr_0422 0.67 -0.3
462,370 + Psyr_0422 0.67 +1.3
462,370 + Psyr_0422 0.67 +2.3
462,370 + Psyr_0422 0.67 +0.4
462,371 - Psyr_0422 0.67 -0.1
462,371 - Psyr_0422 0.67 -0.6
462,371 - Psyr_0422 0.67 -0.0
462,371 - Psyr_0422 0.67 +0.0
462,371 - Psyr_0422 0.67 -0.6
462,636 - Psyr_0422 0.89 -2.2
462,816 + +0.2
462,816 + +0.3
462,816 + -0.1
462,816 + -0.6
462,816 + +0.2
462,817 - -2.4
462,817 - +1.1
462,817 - -1.1
462,817 - +0.1
462,817 - +0.5
462,817 - -0.1
462,817 - +0.4
462,817 - -0.9
462,817 - +0.1
463,022 - Psyr_0423 0.34 +0.4
463,044 + Psyr_0423 0.37 -2.5
463,044 + Psyr_0423 0.37 -1.5
463,045 - Psyr_0423 0.37 -0.2
463,112 - Psyr_0423 0.47 -0.9
463,153 + Psyr_0423 0.52 +0.1
463,155 + Psyr_0423 0.52 -0.3
463,155 + Psyr_0423 0.52 -0.7
463,155 + Psyr_0423 0.52 +1.7
463,155 + Psyr_0423 0.52 -0.1
463,155 + Psyr_0423 0.52 -0.4
463,155 + Psyr_0423 0.52 -1.1
463,156 - Psyr_0423 0.53 +0.4
463,156 - Psyr_0423 0.53 +0.4
463,156 - Psyr_0423 0.53 +0.0
463,156 - Psyr_0423 0.53 +0.3
463,156 - Psyr_0423 0.53 +0.1
463,156 - Psyr_0423 0.53 -0.2
463,156 - Psyr_0423 0.53 -0.0
463,156 - Psyr_0423 0.53 +0.3
463,156 - Psyr_0423 0.53 -0.1
463,258 - Psyr_0423 0.67 +0.3
463,260 + Psyr_0423 0.67 +1.3
463,261 - Psyr_0423 0.67 +0.3
463,523 + +0.5
463,547 + Psyr_0424 0.11 -0.6
463,548 - Psyr_0424 0.11 +0.7
463,548 - Psyr_0424 0.11 +1.3
463,549 + Psyr_0424 0.11 +1.3
463,549 + Psyr_0424 0.11 +0.0
463,549 + Psyr_0424 0.11 +0.3
463,549 + Psyr_0424 0.11 +1.0
463,549 + Psyr_0424 0.11 -0.0
463,549 + Psyr_0424 0.11 +1.1
463,549 + Psyr_0424 0.11 +0.3
463,549 + Psyr_0424 0.11 -0.6
463,549 + Psyr_0424 0.11 -0.2
463,549 + Psyr_0424 0.11 -0.2
463,549 + Psyr_0424 0.11 +0.2
463,549 + Psyr_0424 0.11 +0.7
463,549 + Psyr_0424 0.11 -2.2
463,549 + Psyr_0424 0.11 +0.3
463,549 + Psyr_0424 0.11 -0.3
463,549 + Psyr_0424 0.11 +0.3
463,549 + Psyr_0424 0.11 -0.2
463,549 + Psyr_0424 0.11 -0.9
463,549 + Psyr_0424 0.11 +0.9
463,549 + Psyr_0424 0.11 -0.3
463,549 + Psyr_0424 0.11 -0.9
463,549 + Psyr_0424 0.11 +0.3
463,550 - Psyr_0424 0.11 +0.0
463,550 - Psyr_0424 0.11 +0.4
463,550 - Psyr_0424 0.11 +0.6
463,550 - Psyr_0424 0.11 -0.3
463,550 - Psyr_0424 0.11 +1.4
463,550 - Psyr_0424 0.11 -0.9
463,550 - Psyr_0424 0.11 -0.1
463,550 - Psyr_0424 0.11 -0.2
463,550 - Psyr_0424 0.11 -0.7
463,550 - Psyr_0424 0.11 -0.0
463,550 - Psyr_0424 0.11 -0.6
463,550 - Psyr_0424 0.11 +0.5
463,550 - Psyr_0424 0.11 +0.3
463,550 - Psyr_0424 0.11 -0.5
463,550 - Psyr_0424 0.11 +0.3
463,550 - Psyr_0424 0.11 +0.3
463,550 - Psyr_0424 0.11 +1.6
463,550 - Psyr_0424 0.11 -0.9

Or see this region's nucleotide sequence