Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4887

Experiment: RCH2 defined with Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4886 and Pf6N2E2_4887 are separated by 158 nucleotidesPf6N2E2_4887 and Pf6N2E2_4888 are separated by 114 nucleotides Pf6N2E2_4886 - Catalase (EC 1.11.1.6), at 5,634,340 to 5,635,788 _4886 Pf6N2E2_4887 - Bacterioferritin, at 5,635,947 to 5,636,411 _4887 Pf6N2E2_4888 - Excinuclease ABC subunit A, at 5,636,526 to 5,639,360 _4888 Position (kb) 5635 5636 5637Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5634.985 kb on + strand, within Pf6N2E2_4886at 5634.985 kb on + strand, within Pf6N2E2_4886at 5634.985 kb on + strand, within Pf6N2E2_4886at 5634.986 kb on - strand, within Pf6N2E2_4886at 5634.986 kb on - strand, within Pf6N2E2_4886at 5634.986 kb on - strand, within Pf6N2E2_4886at 5635.058 kb on - strand, within Pf6N2E2_4886at 5635.156 kb on + strand, within Pf6N2E2_4886at 5635.157 kb on - strand, within Pf6N2E2_4886at 5635.253 kb on - strand, within Pf6N2E2_4886at 5635.253 kb on - strand, within Pf6N2E2_4886at 5635.253 kb on - strand, within Pf6N2E2_4886at 5635.352 kb on - strand, within Pf6N2E2_4886at 5635.417 kb on - strand, within Pf6N2E2_4886at 5635.417 kb on - strand, within Pf6N2E2_4886at 5635.417 kb on - strand, within Pf6N2E2_4886at 5635.432 kb on + strand, within Pf6N2E2_4886at 5635.433 kb on - strand, within Pf6N2E2_4886at 5635.433 kb on - strand, within Pf6N2E2_4886at 5635.501 kb on + strand, within Pf6N2E2_4886at 5635.501 kb on + strand, within Pf6N2E2_4886at 5635.502 kb on - strand, within Pf6N2E2_4886at 5635.502 kb on - strand, within Pf6N2E2_4886at 5635.532 kb on - strand, within Pf6N2E2_4886at 5635.597 kb on + strand, within Pf6N2E2_4886at 5635.597 kb on + strand, within Pf6N2E2_4886at 5635.598 kb on - strand, within Pf6N2E2_4886at 5635.598 kb on - strand, within Pf6N2E2_4886at 5635.600 kb on + strand, within Pf6N2E2_4886at 5635.600 kb on + strand, within Pf6N2E2_4886at 5635.600 kb on + strand, within Pf6N2E2_4886at 5635.600 kb on + strand, within Pf6N2E2_4886at 5635.601 kb on - strand, within Pf6N2E2_4886at 5635.601 kb on - strand, within Pf6N2E2_4886at 5635.601 kb on - strand, within Pf6N2E2_4886at 5635.782 kb on + strandat 5635.787 kb on - strandat 5635.836 kb on - strandat 5635.839 kb on + strandat 5635.840 kb on - strandat 5635.873 kb on - strandat 5635.913 kb on + strandat 5635.913 kb on + strandat 5635.914 kb on - strandat 5635.940 kb on + strandat 5635.940 kb on + strandat 5635.940 kb on + strandat 5635.941 kb on - strandat 5635.941 kb on - strandat 5635.941 kb on - strandat 5635.967 kb on - strandat 5635.967 kb on - strandat 5635.975 kb on - strandat 5636.020 kb on - strand, within Pf6N2E2_4887at 5636.020 kb on - strand, within Pf6N2E2_4887at 5636.020 kb on - strand, within Pf6N2E2_4887at 5636.040 kb on + strand, within Pf6N2E2_4887at 5636.040 kb on + strand, within Pf6N2E2_4887at 5636.040 kb on + strand, within Pf6N2E2_4887at 5636.040 kb on + strand, within Pf6N2E2_4887at 5636.041 kb on - strand, within Pf6N2E2_4887at 5636.041 kb on - strand, within Pf6N2E2_4887at 5636.067 kb on + strand, within Pf6N2E2_4887at 5636.067 kb on + strand, within Pf6N2E2_4887at 5636.067 kb on + strand, within Pf6N2E2_4887at 5636.068 kb on - strand, within Pf6N2E2_4887at 5636.076 kb on - strand, within Pf6N2E2_4887at 5636.226 kb on + strand, within Pf6N2E2_4887at 5636.226 kb on + strand, within Pf6N2E2_4887at 5636.227 kb on - strand, within Pf6N2E2_4887at 5636.283 kb on + strand, within Pf6N2E2_4887at 5636.283 kb on + strand, within Pf6N2E2_4887at 5636.284 kb on - strand, within Pf6N2E2_4887at 5636.284 kb on - strand, within Pf6N2E2_4887at 5636.284 kb on - strand, within Pf6N2E2_4887at 5636.284 kb on - strand, within Pf6N2E2_4887at 5636.284 kb on - strand, within Pf6N2E2_4887at 5636.336 kb on + strand, within Pf6N2E2_4887at 5636.336 kb on + strand, within Pf6N2E2_4887at 5636.336 kb on + strand, within Pf6N2E2_4887at 5636.336 kb on + strand, within Pf6N2E2_4887at 5636.336 kb on + strand, within Pf6N2E2_4887at 5636.336 kb on + strand, within Pf6N2E2_4887at 5636.337 kb on - strand, within Pf6N2E2_4887at 5636.337 kb on - strand, within Pf6N2E2_4887at 5636.337 kb on - strand, within Pf6N2E2_4887at 5636.337 kb on - strand, within Pf6N2E2_4887at 5636.340 kb on + strand, within Pf6N2E2_4887at 5636.340 kb on + strand, within Pf6N2E2_4887at 5636.340 kb on + strand, within Pf6N2E2_4887at 5636.341 kb on - strand, within Pf6N2E2_4887at 5636.341 kb on - strand, within Pf6N2E2_4887at 5636.391 kb on + strandat 5636.560 kb on + strandat 5636.560 kb on + strandat 5636.560 kb on + strandat 5636.560 kb on + strandat 5636.561 kb on - strandat 5636.561 kb on - strandat 5636.561 kb on - strandat 5636.573 kb on - strandat 5636.573 kb on - strandat 5636.573 kb on - strandat 5636.619 kb on + strandat 5636.620 kb on - strandat 5636.709 kb on + strandat 5636.709 kb on + strandat 5636.710 kb on - strandat 5636.710 kb on - strandat 5636.710 kb on - strandat 5636.710 kb on - strandat 5636.710 kb on - strandat 5636.710 kb on - strandat 5636.710 kb on - strandat 5636.714 kb on + strandat 5636.714 kb on + strandat 5636.714 kb on + strandat 5636.714 kb on + strandat 5636.715 kb on - strandat 5636.715 kb on - strandat 5636.715 kb on - strandat 5636.715 kb on - strandat 5636.802 kb on - strandat 5636.803 kb on + strandat 5636.803 kb on + strandat 5636.803 kb on + strandat 5636.803 kb on + strandat 5636.803 kb on + strandat 5636.803 kb on + strandat 5636.804 kb on - strandat 5636.804 kb on - strandat 5636.804 kb on - strandat 5636.804 kb on - strandat 5636.804 kb on - strandat 5636.804 kb on - strandat 5636.804 kb on - strandat 5636.804 kb on - strandat 5636.804 kb on - strandat 5636.804 kb on - strandat 5636.804 kb on - strandat 5636.905 kb on + strand, within Pf6N2E2_4888at 5636.905 kb on + strand, within Pf6N2E2_4888at 5636.905 kb on + strand, within Pf6N2E2_4888at 5636.905 kb on + strand, within Pf6N2E2_4888at 5636.905 kb on + strand, within Pf6N2E2_4888at 5636.906 kb on - strand, within Pf6N2E2_4888at 5636.906 kb on - strand, within Pf6N2E2_4888at 5636.906 kb on - strand, within Pf6N2E2_4888at 5636.906 kb on - strand, within Pf6N2E2_4888at 5636.906 kb on - strand, within Pf6N2E2_4888at 5636.906 kb on - strand, within Pf6N2E2_4888at 5636.906 kb on - strand, within Pf6N2E2_4888at 5637.025 kb on + strand, within Pf6N2E2_4888at 5637.025 kb on + strand, within Pf6N2E2_4888at 5637.026 kb on - strand, within Pf6N2E2_4888at 5637.026 kb on - strand, within Pf6N2E2_4888at 5637.026 kb on - strand, within Pf6N2E2_4888at 5637.052 kb on + strand, within Pf6N2E2_4888at 5637.052 kb on + strand, within Pf6N2E2_4888at 5637.053 kb on - strand, within Pf6N2E2_4888at 5637.081 kb on + strand, within Pf6N2E2_4888at 5637.081 kb on + strand, within Pf6N2E2_4888at 5637.082 kb on - strand, within Pf6N2E2_4888at 5637.082 kb on - strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.085 kb on + strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.086 kb on - strand, within Pf6N2E2_4888at 5637.252 kb on - strand, within Pf6N2E2_4888at 5637.253 kb on + strand, within Pf6N2E2_4888at 5637.253 kb on + strand, within Pf6N2E2_4888at 5637.253 kb on + strand, within Pf6N2E2_4888at 5637.254 kb on - strand, within Pf6N2E2_4888at 5637.254 kb on - strand, within Pf6N2E2_4888at 5637.254 kb on - strand, within Pf6N2E2_4888at 5637.254 kb on - strand, within Pf6N2E2_4888

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Cobalt chloride 0.04 mM
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5,634,985 + Pf6N2E2_4886 0.45 -0.3
5,634,985 + Pf6N2E2_4886 0.45 +0.7
5,634,985 + Pf6N2E2_4886 0.45 -1.7
5,634,986 - Pf6N2E2_4886 0.45 -0.1
5,634,986 - Pf6N2E2_4886 0.45 +1.3
5,634,986 - Pf6N2E2_4886 0.45 -2.5
5,635,058 - Pf6N2E2_4886 0.50 -0.8
5,635,156 + Pf6N2E2_4886 0.56 -2.3
5,635,157 - Pf6N2E2_4886 0.56 -2.5
5,635,253 - Pf6N2E2_4886 0.63 +0.0
5,635,253 - Pf6N2E2_4886 0.63 -0.6
5,635,253 - Pf6N2E2_4886 0.63 -1.5
5,635,352 - Pf6N2E2_4886 0.70 -0.4
5,635,417 - Pf6N2E2_4886 0.74 +0.1
5,635,417 - Pf6N2E2_4886 0.74 +0.1
5,635,417 - Pf6N2E2_4886 0.74 +0.4
5,635,432 + Pf6N2E2_4886 0.75 -0.7
5,635,433 - Pf6N2E2_4886 0.75 +2.5
5,635,433 - Pf6N2E2_4886 0.75 +0.5
5,635,501 + Pf6N2E2_4886 0.80 -0.1
5,635,501 + Pf6N2E2_4886 0.80 -0.0
5,635,502 - Pf6N2E2_4886 0.80 +1.8
5,635,502 - Pf6N2E2_4886 0.80 +0.2
5,635,532 - Pf6N2E2_4886 0.82 -0.4
5,635,597 + Pf6N2E2_4886 0.87 -0.4
5,635,597 + Pf6N2E2_4886 0.87 -1.6
5,635,598 - Pf6N2E2_4886 0.87 -0.5
5,635,598 - Pf6N2E2_4886 0.87 -0.5
5,635,600 + Pf6N2E2_4886 0.87 +0.0
5,635,600 + Pf6N2E2_4886 0.87 +0.3
5,635,600 + Pf6N2E2_4886 0.87 +0.8
5,635,600 + Pf6N2E2_4886 0.87 -0.3
5,635,601 - Pf6N2E2_4886 0.87 -1.9
5,635,601 - Pf6N2E2_4886 0.87 +0.5
5,635,601 - Pf6N2E2_4886 0.87 -0.1
5,635,782 + -0.9
5,635,787 - -0.3
5,635,836 - -1.1
5,635,839 + +1.0
5,635,840 - +0.1
5,635,873 - +1.3
5,635,913 + +0.9
5,635,913 + -1.6
5,635,914 - +0.7
5,635,940 + -1.0
5,635,940 + -0.9
5,635,940 + -0.1
5,635,941 - +0.1
5,635,941 - +2.7
5,635,941 - +2.3
5,635,967 - +1.2
5,635,967 - +1.1
5,635,975 - +1.8
5,636,020 - Pf6N2E2_4887 0.16 +0.4
5,636,020 - Pf6N2E2_4887 0.16 +1.7
5,636,020 - Pf6N2E2_4887 0.16 +1.8
5,636,040 + Pf6N2E2_4887 0.20 +1.8
5,636,040 + Pf6N2E2_4887 0.20 +2.0
5,636,040 + Pf6N2E2_4887 0.20 +1.1
5,636,040 + Pf6N2E2_4887 0.20 -1.0
5,636,041 - Pf6N2E2_4887 0.20 -0.3
5,636,041 - Pf6N2E2_4887 0.20 +0.1
5,636,067 + Pf6N2E2_4887 0.26 -1.1
5,636,067 + Pf6N2E2_4887 0.26 -0.1
5,636,067 + Pf6N2E2_4887 0.26 +1.0
5,636,068 - Pf6N2E2_4887 0.26 +1.4
5,636,076 - Pf6N2E2_4887 0.28 -0.9
5,636,226 + Pf6N2E2_4887 0.60 +2.4
5,636,226 + Pf6N2E2_4887 0.60 +1.8
5,636,227 - Pf6N2E2_4887 0.60 +1.4
5,636,283 + Pf6N2E2_4887 0.72 -1.6
5,636,283 + Pf6N2E2_4887 0.72 +0.3
5,636,284 - Pf6N2E2_4887 0.72 -0.3
5,636,284 - Pf6N2E2_4887 0.72 +1.4
5,636,284 - Pf6N2E2_4887 0.72 +1.9
5,636,284 - Pf6N2E2_4887 0.72 +0.9
5,636,284 - Pf6N2E2_4887 0.72 -2.3
5,636,336 + Pf6N2E2_4887 0.84 +1.1
5,636,336 + Pf6N2E2_4887 0.84 -1.4
5,636,336 + Pf6N2E2_4887 0.84 +1.4
5,636,336 + Pf6N2E2_4887 0.84 +0.1
5,636,336 + Pf6N2E2_4887 0.84 -0.1
5,636,336 + Pf6N2E2_4887 0.84 +1.5
5,636,337 - Pf6N2E2_4887 0.84 +1.7
5,636,337 - Pf6N2E2_4887 0.84 +1.3
5,636,337 - Pf6N2E2_4887 0.84 +0.4
5,636,337 - Pf6N2E2_4887 0.84 +1.7
5,636,340 + Pf6N2E2_4887 0.85 +1.3
5,636,340 + Pf6N2E2_4887 0.85 +2.2
5,636,340 + Pf6N2E2_4887 0.85 -0.6
5,636,341 - Pf6N2E2_4887 0.85 +0.9
5,636,341 - Pf6N2E2_4887 0.85 +1.0
5,636,391 + +0.3
5,636,560 + +0.1
5,636,560 + +1.4
5,636,560 + +0.4
5,636,560 + +1.7
5,636,561 - -0.9
5,636,561 - +0.9
5,636,561 - +1.3
5,636,573 - +1.4
5,636,573 - -0.4
5,636,573 - +1.7
5,636,619 + -0.4
5,636,620 - +1.0
5,636,709 + +1.4
5,636,709 + +2.0
5,636,710 - -0.6
5,636,710 - +2.3
5,636,710 - -0.2
5,636,710 - +1.1
5,636,710 - +0.4
5,636,710 - -2.0
5,636,710 - +0.5
5,636,714 + -1.2
5,636,714 + -1.7
5,636,714 + -1.6
5,636,714 + +3.0
5,636,715 - -0.5
5,636,715 - -0.1
5,636,715 - -2.6
5,636,715 - -1.3
5,636,802 - -0.5
5,636,803 + -1.2
5,636,803 + +0.6
5,636,803 + +1.0
5,636,803 + -0.9
5,636,803 + +0.9
5,636,803 + -1.0
5,636,804 - -0.5
5,636,804 - +1.4
5,636,804 - -0.1
5,636,804 - +1.4
5,636,804 - +1.2
5,636,804 - +0.5
5,636,804 - +0.8
5,636,804 - +0.6
5,636,804 - +0.7
5,636,804 - -0.1
5,636,804 - -0.7
5,636,905 + Pf6N2E2_4888 0.13 +0.6
5,636,905 + Pf6N2E2_4888 0.13 +0.4
5,636,905 + Pf6N2E2_4888 0.13 +0.2
5,636,905 + Pf6N2E2_4888 0.13 -1.7
5,636,905 + Pf6N2E2_4888 0.13 +0.3
5,636,906 - Pf6N2E2_4888 0.13 -0.9
5,636,906 - Pf6N2E2_4888 0.13 +1.6
5,636,906 - Pf6N2E2_4888 0.13 +0.1
5,636,906 - Pf6N2E2_4888 0.13 -0.1
5,636,906 - Pf6N2E2_4888 0.13 +0.9
5,636,906 - Pf6N2E2_4888 0.13 -0.2
5,636,906 - Pf6N2E2_4888 0.13 +2.3
5,637,025 + Pf6N2E2_4888 0.18 +0.4
5,637,025 + Pf6N2E2_4888 0.18 +1.1
5,637,026 - Pf6N2E2_4888 0.18 -0.5
5,637,026 - Pf6N2E2_4888 0.18 -1.4
5,637,026 - Pf6N2E2_4888 0.18 -1.9
5,637,052 + Pf6N2E2_4888 0.19 -0.6
5,637,052 + Pf6N2E2_4888 0.19 -0.1
5,637,053 - Pf6N2E2_4888 0.19 +0.8
5,637,081 + Pf6N2E2_4888 0.20 +1.4
5,637,081 + Pf6N2E2_4888 0.20 -0.6
5,637,082 - Pf6N2E2_4888 0.20 +1.7
5,637,082 - Pf6N2E2_4888 0.20 -0.4
5,637,085 + Pf6N2E2_4888 0.20 -0.0
5,637,085 + Pf6N2E2_4888 0.20 -0.4
5,637,085 + Pf6N2E2_4888 0.20 +0.6
5,637,085 + Pf6N2E2_4888 0.20 -0.4
5,637,085 + Pf6N2E2_4888 0.20 -1.4
5,637,085 + Pf6N2E2_4888 0.20 -0.1
5,637,085 + Pf6N2E2_4888 0.20 +0.5
5,637,085 + Pf6N2E2_4888 0.20 +0.6
5,637,085 + Pf6N2E2_4888 0.20 +0.7
5,637,085 + Pf6N2E2_4888 0.20 +1.0
5,637,085 + Pf6N2E2_4888 0.20 -0.9
5,637,085 + Pf6N2E2_4888 0.20 +1.4
5,637,085 + Pf6N2E2_4888 0.20 -0.3
5,637,085 + Pf6N2E2_4888 0.20 +0.4
5,637,085 + Pf6N2E2_4888 0.20 +1.0
5,637,085 + Pf6N2E2_4888 0.20 +0.5
5,637,085 + Pf6N2E2_4888 0.20 +1.9
5,637,086 - Pf6N2E2_4888 0.20 -0.9
5,637,086 - Pf6N2E2_4888 0.20 -0.5
5,637,086 - Pf6N2E2_4888 0.20 -0.4
5,637,086 - Pf6N2E2_4888 0.20 +2.2
5,637,086 - Pf6N2E2_4888 0.20 -1.5
5,637,086 - Pf6N2E2_4888 0.20 +1.3
5,637,086 - Pf6N2E2_4888 0.20 +1.0
5,637,086 - Pf6N2E2_4888 0.20 +1.4
5,637,086 - Pf6N2E2_4888 0.20 +0.2
5,637,086 - Pf6N2E2_4888 0.20 +1.1
5,637,086 - Pf6N2E2_4888 0.20 +1.0
5,637,086 - Pf6N2E2_4888 0.20 -4.0
5,637,086 - Pf6N2E2_4888 0.20 -1.1
5,637,086 - Pf6N2E2_4888 0.20 +0.7
5,637,086 - Pf6N2E2_4888 0.20 -0.1
5,637,252 - Pf6N2E2_4888 0.26 +1.0
5,637,253 + Pf6N2E2_4888 0.26 -0.4
5,637,253 + Pf6N2E2_4888 0.26 -0.1
5,637,253 + Pf6N2E2_4888 0.26 +1.6
5,637,254 - Pf6N2E2_4888 0.26 -0.7
5,637,254 - Pf6N2E2_4888 0.26 -1.1
5,637,254 - Pf6N2E2_4888 0.26 -0.8
5,637,254 - Pf6N2E2_4888 0.26 +0.6

Or see this region's nucleotide sequence