Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3583

Experiment: RCH2 defined with Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3582 and Pf6N2E2_3583 are separated by 30 nucleotidesPf6N2E2_3583 and Pf6N2E2_3584 are separated by 27 nucleotides Pf6N2E2_3582 - L-pipecolate dehydrogenase (EC 1.5.99.3), at 4,173,832 to 4,175,322 _3582 Pf6N2E2_3583 - hypothetical protein, at 4,175,353 to 4,175,472 _3583 Pf6N2E2_3584 - Transcriptional regulator, LysR family, at 4,175,500 to 4,176,408 _3584 Position (kb) 4175 4176Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4174.574 kb on - strand, within Pf6N2E2_3582at 4174.574 kb on - strand, within Pf6N2E2_3582at 4174.574 kb on - strand, within Pf6N2E2_3582at 4174.574 kb on - strand, within Pf6N2E2_3582at 4174.964 kb on + strand, within Pf6N2E2_3582at 4175.087 kb on + strand, within Pf6N2E2_3582at 4175.087 kb on + strand, within Pf6N2E2_3582at 4175.087 kb on + strand, within Pf6N2E2_3582at 4175.087 kb on + strand, within Pf6N2E2_3582at 4175.087 kb on + strand, within Pf6N2E2_3582at 4175.088 kb on - strand, within Pf6N2E2_3582at 4175.088 kb on - strand, within Pf6N2E2_3582at 4175.088 kb on - strand, within Pf6N2E2_3582at 4175.088 kb on - strand, within Pf6N2E2_3582at 4175.088 kb on - strand, within Pf6N2E2_3582at 4175.088 kb on - strand, within Pf6N2E2_3582at 4175.088 kb on - strand, within Pf6N2E2_3582at 4175.255 kb on - strandat 4175.277 kb on - strandat 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.387 kb on + strand, within Pf6N2E2_3583at 4175.388 kb on - strand, within Pf6N2E2_3583at 4175.388 kb on - strand, within Pf6N2E2_3583at 4175.388 kb on - strand, within Pf6N2E2_3583at 4175.388 kb on - strand, within Pf6N2E2_3583at 4175.388 kb on - strand, within Pf6N2E2_3583at 4175.393 kb on + strand, within Pf6N2E2_3583at 4175.393 kb on + strand, within Pf6N2E2_3583at 4175.393 kb on + strand, within Pf6N2E2_3583at 4175.394 kb on - strand, within Pf6N2E2_3583at 4175.394 kb on - strand, within Pf6N2E2_3583at 4175.394 kb on - strand, within Pf6N2E2_3583at 4175.394 kb on - strand, within Pf6N2E2_3583at 4175.427 kb on - strand, within Pf6N2E2_3583at 4175.435 kb on + strand, within Pf6N2E2_3583at 4175.435 kb on + strand, within Pf6N2E2_3583at 4175.436 kb on - strand, within Pf6N2E2_3583at 4175.436 kb on - strand, within Pf6N2E2_3583at 4175.436 kb on - strand, within Pf6N2E2_3583at 4175.447 kb on + strand, within Pf6N2E2_3583at 4175.489 kb on + strandat 4175.490 kb on - strandat 4175.490 kb on - strandat 4175.490 kb on - strandat 4175.499 kb on + strandat 4175.499 kb on + strandat 4175.499 kb on + strandat 4175.499 kb on + strandat 4175.499 kb on + strandat 4175.499 kb on + strandat 4175.499 kb on + strandat 4175.499 kb on + strandat 4175.499 kb on + strandat 4175.499 kb on + strandat 4175.499 kb on + strandat 4175.500 kb on - strandat 4175.500 kb on - strandat 4175.500 kb on - strandat 4175.500 kb on - strandat 4175.508 kb on + strandat 4175.508 kb on + strandat 4175.508 kb on + strandat 4175.508 kb on + strandat 4175.509 kb on - strandat 4175.516 kb on - strandat 4175.516 kb on - strandat 4175.516 kb on - strandat 4175.710 kb on + strand, within Pf6N2E2_3584at 4175.710 kb on + strand, within Pf6N2E2_3584at 4175.711 kb on - strand, within Pf6N2E2_3584at 4175.711 kb on - strand, within Pf6N2E2_3584at 4175.754 kb on + strand, within Pf6N2E2_3584at 4175.761 kb on + strand, within Pf6N2E2_3584at 4175.761 kb on + strand, within Pf6N2E2_3584at 4175.762 kb on - strand, within Pf6N2E2_3584at 4175.762 kb on - strand, within Pf6N2E2_3584at 4175.762 kb on - strand, within Pf6N2E2_3584at 4175.762 kb on - strand, within Pf6N2E2_3584at 4175.762 kb on - strand, within Pf6N2E2_3584at 4175.773 kb on + strand, within Pf6N2E2_3584at 4175.773 kb on + strand, within Pf6N2E2_3584at 4175.774 kb on - strand, within Pf6N2E2_3584at 4175.944 kb on + strand, within Pf6N2E2_3584at 4175.945 kb on - strand, within Pf6N2E2_3584at 4176.133 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.147 kb on + strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.148 kb on - strand, within Pf6N2E2_3584at 4176.151 kb on + strand, within Pf6N2E2_3584at 4176.151 kb on + strand, within Pf6N2E2_3584at 4176.151 kb on + strand, within Pf6N2E2_3584at 4176.151 kb on + strand, within Pf6N2E2_3584at 4176.152 kb on - strand, within Pf6N2E2_3584at 4176.152 kb on - strand, within Pf6N2E2_3584at 4176.152 kb on - strand, within Pf6N2E2_3584at 4176.152 kb on - strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.178 kb on + strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.179 kb on - strand, within Pf6N2E2_3584at 4176.262 kb on - strand, within Pf6N2E2_3584at 4176.307 kb on + strand, within Pf6N2E2_3584at 4176.307 kb on + strand, within Pf6N2E2_3584at 4176.308 kb on - strand, within Pf6N2E2_3584at 4176.308 kb on - strand, within Pf6N2E2_3584at 4176.308 kb on - strand, within Pf6N2E2_3584at 4176.310 kb on + strand, within Pf6N2E2_3584at 4176.310 kb on + strand, within Pf6N2E2_3584at 4176.310 kb on + strand, within Pf6N2E2_3584at 4176.310 kb on + strand, within Pf6N2E2_3584at 4176.310 kb on + strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.311 kb on - strand, within Pf6N2E2_3584at 4176.406 kb on + strandat 4176.406 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Cobalt chloride 0.04 mM
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4,174,574 - Pf6N2E2_3582 0.50 +1.3
4,174,574 - Pf6N2E2_3582 0.50 -0.5
4,174,574 - Pf6N2E2_3582 0.50 +1.0
4,174,574 - Pf6N2E2_3582 0.50 +1.9
4,174,964 + Pf6N2E2_3582 0.76 -0.1
4,175,087 + Pf6N2E2_3582 0.84 -0.1
4,175,087 + Pf6N2E2_3582 0.84 -1.1
4,175,087 + Pf6N2E2_3582 0.84 -3.0
4,175,087 + Pf6N2E2_3582 0.84 -0.8
4,175,087 + Pf6N2E2_3582 0.84 +0.4
4,175,088 - Pf6N2E2_3582 0.84 +0.6
4,175,088 - Pf6N2E2_3582 0.84 +1.5
4,175,088 - Pf6N2E2_3582 0.84 -0.6
4,175,088 - Pf6N2E2_3582 0.84 +2.6
4,175,088 - Pf6N2E2_3582 0.84 -0.6
4,175,088 - Pf6N2E2_3582 0.84 +1.2
4,175,088 - Pf6N2E2_3582 0.84 -1.7
4,175,255 - +0.8
4,175,277 - +1.3
4,175,387 + Pf6N2E2_3583 0.28 +0.1
4,175,387 + Pf6N2E2_3583 0.28 +1.1
4,175,387 + Pf6N2E2_3583 0.28 -1.5
4,175,387 + Pf6N2E2_3583 0.28 +0.1
4,175,387 + Pf6N2E2_3583 0.28 -1.1
4,175,387 + Pf6N2E2_3583 0.28 +0.4
4,175,387 + Pf6N2E2_3583 0.28 +0.4
4,175,387 + Pf6N2E2_3583 0.28 -0.9
4,175,387 + Pf6N2E2_3583 0.28 +0.3
4,175,387 + Pf6N2E2_3583 0.28 -0.0
4,175,387 + Pf6N2E2_3583 0.28 +1.3
4,175,388 - Pf6N2E2_3583 0.29 +3.0
4,175,388 - Pf6N2E2_3583 0.29 +1.1
4,175,388 - Pf6N2E2_3583 0.29 +1.7
4,175,388 - Pf6N2E2_3583 0.29 +0.7
4,175,388 - Pf6N2E2_3583 0.29 +1.4
4,175,393 + Pf6N2E2_3583 0.33 -1.0
4,175,393 + Pf6N2E2_3583 0.33 +0.1
4,175,393 + Pf6N2E2_3583 0.33 -0.9
4,175,394 - Pf6N2E2_3583 0.34 +2.5
4,175,394 - Pf6N2E2_3583 0.34 +2.5
4,175,394 - Pf6N2E2_3583 0.34 +4.3
4,175,394 - Pf6N2E2_3583 0.34 +1.7
4,175,427 - Pf6N2E2_3583 0.62 +0.0
4,175,435 + Pf6N2E2_3583 0.68 +0.4
4,175,435 + Pf6N2E2_3583 0.68 -0.9
4,175,436 - Pf6N2E2_3583 0.69 +1.0
4,175,436 - Pf6N2E2_3583 0.69 +0.1
4,175,436 - Pf6N2E2_3583 0.69 +3.1
4,175,447 + Pf6N2E2_3583 0.78 -2.8
4,175,489 + +0.8
4,175,490 - +1.7
4,175,490 - +4.0
4,175,490 - +1.9
4,175,499 + -1.9
4,175,499 + -1.6
4,175,499 + -0.3
4,175,499 + -1.2
4,175,499 + +0.3
4,175,499 + -0.0
4,175,499 + +1.8
4,175,499 + +0.5
4,175,499 + +0.8
4,175,499 + -0.6
4,175,499 + +0.3
4,175,500 - +2.1
4,175,500 - +0.8
4,175,500 - +0.3
4,175,500 - +1.2
4,175,508 + -0.2
4,175,508 + +0.6
4,175,508 + -0.2
4,175,508 + -0.1
4,175,509 - +2.9
4,175,516 - +0.4
4,175,516 - +1.4
4,175,516 - +1.4
4,175,710 + Pf6N2E2_3584 0.23 +1.2
4,175,710 + Pf6N2E2_3584 0.23 -0.6
4,175,711 - Pf6N2E2_3584 0.23 +0.0
4,175,711 - Pf6N2E2_3584 0.23 -1.4
4,175,754 + Pf6N2E2_3584 0.28 -2.7
4,175,761 + Pf6N2E2_3584 0.29 -0.1
4,175,761 + Pf6N2E2_3584 0.29 +0.0
4,175,762 - Pf6N2E2_3584 0.29 -1.9
4,175,762 - Pf6N2E2_3584 0.29 +1.8
4,175,762 - Pf6N2E2_3584 0.29 +0.1
4,175,762 - Pf6N2E2_3584 0.29 +2.8
4,175,762 - Pf6N2E2_3584 0.29 +0.1
4,175,773 + Pf6N2E2_3584 0.30 -1.3
4,175,773 + Pf6N2E2_3584 0.30 -1.4
4,175,774 - Pf6N2E2_3584 0.30 +0.9
4,175,944 + Pf6N2E2_3584 0.49 +0.9
4,175,945 - Pf6N2E2_3584 0.49 +2.3
4,176,133 + Pf6N2E2_3584 0.70 -1.4
4,176,147 + Pf6N2E2_3584 0.71 +0.6
4,176,147 + Pf6N2E2_3584 0.71 +0.6
4,176,147 + Pf6N2E2_3584 0.71 -3.0
4,176,147 + Pf6N2E2_3584 0.71 +1.0
4,176,147 + Pf6N2E2_3584 0.71 -0.6
4,176,147 + Pf6N2E2_3584 0.71 -0.7
4,176,147 + Pf6N2E2_3584 0.71 -1.4
4,176,147 + Pf6N2E2_3584 0.71 -0.6
4,176,147 + Pf6N2E2_3584 0.71 +0.5
4,176,147 + Pf6N2E2_3584 0.71 -1.4
4,176,147 + Pf6N2E2_3584 0.71 -1.0
4,176,147 + Pf6N2E2_3584 0.71 +0.0
4,176,147 + Pf6N2E2_3584 0.71 +0.1
4,176,147 + Pf6N2E2_3584 0.71 -1.2
4,176,147 + Pf6N2E2_3584 0.71 -3.0
4,176,147 + Pf6N2E2_3584 0.71 +1.4
4,176,147 + Pf6N2E2_3584 0.71 +0.7
4,176,147 + Pf6N2E2_3584 0.71 -0.2
4,176,147 + Pf6N2E2_3584 0.71 -1.7
4,176,147 + Pf6N2E2_3584 0.71 +1.4
4,176,147 + Pf6N2E2_3584 0.71 -0.7
4,176,147 + Pf6N2E2_3584 0.71 +0.3
4,176,147 + Pf6N2E2_3584 0.71 +0.3
4,176,147 + Pf6N2E2_3584 0.71 -0.9
4,176,148 - Pf6N2E2_3584 0.71 +1.4
4,176,148 - Pf6N2E2_3584 0.71 +0.1
4,176,148 - Pf6N2E2_3584 0.71 -0.4
4,176,148 - Pf6N2E2_3584 0.71 +0.6
4,176,148 - Pf6N2E2_3584 0.71 -1.3
4,176,148 - Pf6N2E2_3584 0.71 +0.9
4,176,148 - Pf6N2E2_3584 0.71 -0.2
4,176,148 - Pf6N2E2_3584 0.71 -0.9
4,176,148 - Pf6N2E2_3584 0.71 +0.3
4,176,148 - Pf6N2E2_3584 0.71 -0.6
4,176,148 - Pf6N2E2_3584 0.71 -0.3
4,176,148 - Pf6N2E2_3584 0.71 +0.2
4,176,148 - Pf6N2E2_3584 0.71 +2.5
4,176,148 - Pf6N2E2_3584 0.71 +1.3
4,176,148 - Pf6N2E2_3584 0.71 -0.6
4,176,148 - Pf6N2E2_3584 0.71 +1.4
4,176,148 - Pf6N2E2_3584 0.71 +0.3
4,176,148 - Pf6N2E2_3584 0.71 -1.1
4,176,151 + Pf6N2E2_3584 0.72 +2.1
4,176,151 + Pf6N2E2_3584 0.72 -1.4
4,176,151 + Pf6N2E2_3584 0.72 -1.2
4,176,151 + Pf6N2E2_3584 0.72 +0.2
4,176,152 - Pf6N2E2_3584 0.72 +1.2
4,176,152 - Pf6N2E2_3584 0.72 +0.3
4,176,152 - Pf6N2E2_3584 0.72 +1.3
4,176,152 - Pf6N2E2_3584 0.72 +1.2
4,176,178 + Pf6N2E2_3584 0.75 +0.2
4,176,178 + Pf6N2E2_3584 0.75 -0.4
4,176,178 + Pf6N2E2_3584 0.75 +0.4
4,176,178 + Pf6N2E2_3584 0.75 +0.4
4,176,178 + Pf6N2E2_3584 0.75 -0.6
4,176,178 + Pf6N2E2_3584 0.75 -1.9
4,176,178 + Pf6N2E2_3584 0.75 -0.1
4,176,178 + Pf6N2E2_3584 0.75 -2.1
4,176,179 - Pf6N2E2_3584 0.75 +0.7
4,176,179 - Pf6N2E2_3584 0.75 -1.7
4,176,179 - Pf6N2E2_3584 0.75 +1.6
4,176,179 - Pf6N2E2_3584 0.75 -0.6
4,176,179 - Pf6N2E2_3584 0.75 -0.9
4,176,179 - Pf6N2E2_3584 0.75 +0.3
4,176,179 - Pf6N2E2_3584 0.75 +1.0
4,176,179 - Pf6N2E2_3584 0.75 -2.0
4,176,262 - Pf6N2E2_3584 0.84 -0.1
4,176,307 + Pf6N2E2_3584 0.89 +0.1
4,176,307 + Pf6N2E2_3584 0.89 +0.4
4,176,308 - Pf6N2E2_3584 0.89 -0.5
4,176,308 - Pf6N2E2_3584 0.89 -0.3
4,176,308 - Pf6N2E2_3584 0.89 -0.7
4,176,310 + Pf6N2E2_3584 0.89 +1.3
4,176,310 + Pf6N2E2_3584 0.89 -0.3
4,176,310 + Pf6N2E2_3584 0.89 +0.3
4,176,310 + Pf6N2E2_3584 0.89 +0.7
4,176,310 + Pf6N2E2_3584 0.89 +0.4
4,176,311 - Pf6N2E2_3584 0.89 +0.3
4,176,311 - Pf6N2E2_3584 0.89 +1.1
4,176,311 - Pf6N2E2_3584 0.89 +0.2
4,176,311 - Pf6N2E2_3584 0.89 +1.1
4,176,311 - Pf6N2E2_3584 0.89 -0.4
4,176,311 - Pf6N2E2_3584 0.89 -0.0
4,176,406 + -0.6
4,176,406 + -0.6

Or see this region's nucleotide sequence