Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_12

Experiment: RCH2 defined with Cobalt chloride 0.04 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_10 and Pf6N2E2_11 are separated by 353 nucleotidesPf6N2E2_11 and Pf6N2E2_12 are separated by 144 nucleotidesPf6N2E2_12 and Pf6N2E2_13 are separated by 24 nucleotides Pf6N2E2_10 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 38,724 to 40,382 _10 Pf6N2E2_11 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 40,736 to 40,888 _11 Pf6N2E2_12 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 41,033 to 41,908 _12 Pf6N2E2_13 - Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V, at 41,933 to 43,213 _13 Position (kb) 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.311 kb on + strandat 40.311 kb on + strandat 40.312 kb on - strandat 40.481 kb on + strandat 40.481 kb on + strandat 40.532 kb on + strandat 40.532 kb on + strandat 40.533 kb on - strandat 40.575 kb on - strandat 40.575 kb on - strandat 40.575 kb on - strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.742 kb on - strandat 40.742 kb on - strandat 40.911 kb on + strandat 40.912 kb on - strandat 40.912 kb on - strandat 40.912 kb on - strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.038 kb on + strandat 41.208 kb on + strand, within Pf6N2E2_12at 41.209 kb on - strand, within Pf6N2E2_12at 41.209 kb on - strand, within Pf6N2E2_12at 41.221 kb on - strand, within Pf6N2E2_12at 41.221 kb on - strand, within Pf6N2E2_12at 41.241 kb on + strand, within Pf6N2E2_12at 41.262 kb on + strand, within Pf6N2E2_12at 41.331 kb on + strand, within Pf6N2E2_12at 41.359 kb on - strand, within Pf6N2E2_12at 41.484 kb on + strand, within Pf6N2E2_12at 41.484 kb on + strand, within Pf6N2E2_12at 41.484 kb on + strand, within Pf6N2E2_12at 41.485 kb on - strand, within Pf6N2E2_12at 41.535 kb on + strand, within Pf6N2E2_12at 41.535 kb on + strand, within Pf6N2E2_12at 41.535 kb on + strand, within Pf6N2E2_12at 41.535 kb on + strand, within Pf6N2E2_12at 41.535 kb on + strand, within Pf6N2E2_12at 41.536 kb on - strand, within Pf6N2E2_12at 41.536 kb on - strand, within Pf6N2E2_12at 41.536 kb on - strand, within Pf6N2E2_12at 41.623 kb on - strand, within Pf6N2E2_12at 42.189 kb on + strand, within Pf6N2E2_13at 42.360 kb on + strand, within Pf6N2E2_13at 42.361 kb on - strand, within Pf6N2E2_13at 42.361 kb on - strand, within Pf6N2E2_13at 42.507 kb on + strand, within Pf6N2E2_13at 42.508 kb on - strand, within Pf6N2E2_13at 42.508 kb on - strand, within Pf6N2E2_13at 42.508 kb on - strand, within Pf6N2E2_13at 42.508 kb on - strand, within Pf6N2E2_13at 42.822 kb on + strand, within Pf6N2E2_13at 42.822 kb on + strand, within Pf6N2E2_13at 42.822 kb on + strand, within Pf6N2E2_13at 42.822 kb on + strand, within Pf6N2E2_13at 42.822 kb on + strand, within Pf6N2E2_13at 42.823 kb on - strand, within Pf6N2E2_13at 42.823 kb on - strand, within Pf6N2E2_13

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Cobalt chloride 0.04 mM
remove
40,106 + Pf6N2E2_10 0.83 -0.0
40,106 + Pf6N2E2_10 0.83 +0.5
40,106 + Pf6N2E2_10 0.83 -1.6
40,106 + Pf6N2E2_10 0.83 -1.8
40,106 + Pf6N2E2_10 0.83 -1.9
40,311 + -1.9
40,311 + -2.4
40,312 - +0.5
40,481 + +0.5
40,481 + -0.0
40,532 + +0.1
40,532 + +1.6
40,533 - -1.6
40,575 - -0.6
40,575 - +0.7
40,575 - -2.3
40,737 + +1.1
40,737 + +1.2
40,737 + -0.3
40,737 + -1.3
40,737 + +1.0
40,737 + -0.6
40,738 - +0.7
40,738 - -0.6
40,738 - -1.9
40,738 - -0.5
40,738 - +0.9
40,738 - -1.7
40,738 - -0.6
40,738 - +0.7
40,742 - -1.3
40,742 - +0.9
40,911 + -0.6
40,912 - +2.3
40,912 - -1.3
40,912 - +1.3
41,034 + +0.0
41,034 + -1.6
41,034 + +0.5
41,034 + -1.9
41,034 + +0.4
41,035 - +0.6
41,035 - +0.7
41,035 - -0.6
41,035 - -0.2
41,035 - +1.4
41,035 - -0.0
41,035 - +1.0
41,035 - -0.2
41,035 - -0.4
41,035 - +0.6
41,035 - +0.6
41,038 + +0.7
41,208 + Pf6N2E2_12 0.20 -1.6
41,209 - Pf6N2E2_12 0.20 -0.3
41,209 - Pf6N2E2_12 0.20 +0.9
41,221 - Pf6N2E2_12 0.21 +2.2
41,221 - Pf6N2E2_12 0.21 -0.1
41,241 + Pf6N2E2_12 0.24 +0.2
41,262 + Pf6N2E2_12 0.26 +0.4
41,331 + Pf6N2E2_12 0.34 -1.3
41,359 - Pf6N2E2_12 0.37 +0.5
41,484 + Pf6N2E2_12 0.51 +1.1
41,484 + Pf6N2E2_12 0.51 +1.7
41,484 + Pf6N2E2_12 0.51 -0.2
41,485 - Pf6N2E2_12 0.52 +0.9
41,535 + Pf6N2E2_12 0.57 -1.6
41,535 + Pf6N2E2_12 0.57 +0.0
41,535 + Pf6N2E2_12 0.57 +0.6
41,535 + Pf6N2E2_12 0.57 -0.3
41,535 + Pf6N2E2_12 0.57 -0.9
41,536 - Pf6N2E2_12 0.57 +2.0
41,536 - Pf6N2E2_12 0.57 +0.6
41,536 - Pf6N2E2_12 0.57 -2.1
41,623 - Pf6N2E2_12 0.67 +0.2
42,189 + Pf6N2E2_13 0.20 -1.1
42,360 + Pf6N2E2_13 0.33 +0.7
42,361 - Pf6N2E2_13 0.33 -1.4
42,361 - Pf6N2E2_13 0.33 -2.3
42,507 + Pf6N2E2_13 0.45 -2.9
42,508 - Pf6N2E2_13 0.45 +0.7
42,508 - Pf6N2E2_13 0.45 -1.5
42,508 - Pf6N2E2_13 0.45 -0.3
42,508 - Pf6N2E2_13 0.45 -0.0
42,822 + Pf6N2E2_13 0.69 +0.6
42,822 + Pf6N2E2_13 0.69 +0.7
42,822 + Pf6N2E2_13 0.69 -2.2
42,822 + Pf6N2E2_13 0.69 -0.3
42,822 + Pf6N2E2_13 0.69 +0.3
42,823 - Pf6N2E2_13 0.69 -1.5
42,823 - Pf6N2E2_13 0.69 +0.1

Or see this region's nucleotide sequence