Experiment: Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT3917 and BT3918 are separated by 112 nucleotides BT3918 and BT3919 overlap by 1 nucleotides BT3919 and BT3920 are separated by 132 nucleotides
BT3917: BT3917 - putative inorganic polyphosphate/ATP-NAD kinase (NCBI ptt file), at 5,091,961 to 5,092,869
BT3917
BT3918: BT3918 - pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file), at 5,092,982 to 5,093,695
BT3918
BT3919: BT3919 - putative biopolymer transport protein (NCBI ptt file), at 5,093,695 to 5,094,414
BT3919
BT3920: BT3920 - conserved hypothetical protein (NCBI ptt file), at 5,094,547 to 5,094,876
BT3920
Position (kb) 5092
5093
5094 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5092.947 kb on + strand at 5093.064 kb on + strand, within BT3918 at 5093.064 kb on + strand, within BT3918 at 5093.064 kb on + strand, within BT3918 at 5093.576 kb on + strand, within BT3918 at 5093.616 kb on + strand, within BT3918 at 5093.662 kb on + strand at 5093.677 kb on + strand at 5093.711 kb on + strand at 5093.829 kb on + strand, within BT3919 at 5093.837 kb on + strand, within BT3919 at 5093.883 kb on + strand, within BT3919 at 5093.887 kb on + strand, within BT3919 at 5093.887 kb on + strand, within BT3919 at 5093.944 kb on + strand, within BT3919 at 5093.946 kb on + strand, within BT3919 at 5093.952 kb on + strand, within BT3919 at 5094.231 kb on + strand, within BT3919 at 5094.322 kb on + strand, within BT3919 at 5094.381 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM remove 5,092,947 + -0.8 5,093,064 + BT3918 0.11 -3.9 5,093,064 + BT3918 0.11 -3.8 5,093,064 + BT3918 0.11 +0.2 5,093,576 + BT3918 0.83 -2.4 5,093,616 + BT3918 0.89 -3.0 5,093,662 + -0.8 5,093,677 + -0.8 5,093,711 + -1.4 5,093,829 + BT3919 0.19 -0.2 5,093,837 + BT3919 0.20 -1.4 5,093,883 + BT3919 0.26 -2.6 5,093,887 + BT3919 0.27 -3.0 5,093,887 + BT3919 0.27 +0.5 5,093,944 + BT3919 0.35 -0.9 5,093,946 + BT3919 0.35 -1.5 5,093,952 + BT3919 0.36 -0.7 5,094,231 + BT3919 0.74 -1.4 5,094,322 + BT3919 0.87 -2.5 5,094,381 + -2.3
Or see this region's nucleotide sequence