Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3819

Experiment: Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT3817 and BT3818 are separated by 1 nucleotidesBT3818 and BT3819 overlap by 23 nucleotidesBT3819 and BT3820 are separated by 14 nucleotides BT3817: BT3817 - rod shape-determining protein rodA (NCBI ptt file), at 4,968,678 to 4,970,135 BT3817 BT3818: BT3818 - conserved hypothetical protein (NCBI ptt file), at 4,970,137 to 4,970,616 BT3818 BT3819: BT3819 - conserved hypothetical protein (NCBI ptt file), at 4,970,594 to 4,972,189 BT3819 BT3820: BT3820 - putative DNA polymerase III, delta subunit (NCBI ptt file), at 4,972,204 to 4,973,328 BT3820 Position (kb) 4970 4971 4972 4973Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4970.618 kb on - strandat 4970.765 kb on - strand, within BT3819at 4970.765 kb on - strand, within BT3819at 4970.927 kb on - strand, within BT3819at 4971.128 kb on - strand, within BT3819at 4971.332 kb on - strand, within BT3819at 4971.341 kb on - strand, within BT3819at 4972.195 kb on - strandat 4972.203 kb on - strandat 4972.206 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM
remove
4,970,618 - -2.1
4,970,765 - BT3819 0.11 -2.3
4,970,765 - BT3819 0.11 -1.8
4,970,927 - BT3819 0.21 -0.7
4,971,128 - BT3819 0.33 -4.1
4,971,332 - BT3819 0.46 -3.9
4,971,341 - BT3819 0.47 -3.4
4,972,195 - +0.3
4,972,203 - -1.3
4,972,206 - -0.7

Or see this region's nucleotide sequence