Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2003

Experiment: Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT2002 and BT2003 are separated by 63 nucleotidesBT2003 and BT2004 are separated by 12 nucleotidesBT2004 and BT2005 overlap by 4 nucleotides BT2002: BT2002 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (NCBI ptt file), at 2,518,622 to 2,519,794 BT2002 BT2003: BT2003 - putative membrane peptidase (NCBI ptt file), at 2,519,858 to 2,520,715 BT2003 BT2004: BT2004 - RimM protein, required for 16S rRNA processing (NCBI ptt file), at 2,520,728 to 2,521,267 BT2004 BT2005: BT2005 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NCBI ptt file), at 2,521,264 to 2,522,568 BT2005 Position (kb) 2519 2520 2521Strain fitness (log2 ratio) -3 -2 -1 0 1at 2520.085 kb on - strand, within BT2003at 2520.149 kb on - strand, within BT2003at 2520.641 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM
remove
2,520,085 - BT2003 0.26 -3.7
2,520,149 - BT2003 0.34 -3.2
2,520,641 - -1.8

Or see this region's nucleotide sequence