Experiment: Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0660 and BT0661 are separated by 758 nucleotides BT0661 and BT0662 are separated by 359 nucleotides
BT0660: BT0660 - conserved hypothetical protein (NCBI ptt file), at 812,955 to 814,106
BT0660
BT0661: BT0661 - hypothetical protein (NCBI ptt file), at 814,865 to 816,091
BT0661
BT0662: BT0662 - hypothetical protein (NCBI ptt file), at 816,451 to 818,247
BT0662
Position (kb) 814
815
816
817 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 814.507 kb on - strand at 814.645 kb on + strand at 814.646 kb on - strand at 814.763 kb on - strand at 814.879 kb on + strand at 814.902 kb on + strand at 815.043 kb on + strand, within BT0661 at 815.043 kb on + strand, within BT0661 at 815.044 kb on - strand, within BT0661 at 815.190 kb on + strand, within BT0661 at 815.197 kb on + strand, within BT0661 at 815.220 kb on - strand, within BT0661 at 815.258 kb on - strand, within BT0661 at 815.262 kb on + strand, within BT0661 at 815.305 kb on + strand, within BT0661 at 815.322 kb on - strand, within BT0661 at 815.556 kb on + strand, within BT0661 at 815.570 kb on + strand, within BT0661 at 815.581 kb on - strand, within BT0661 at 815.637 kb on - strand, within BT0661 at 815.690 kb on - strand, within BT0661 at 815.916 kb on + strand, within BT0661 at 815.917 kb on - strand, within BT0661 at 815.924 kb on + strand, within BT0661 at 815.978 kb on - strand at 816.033 kb on - strand at 816.064 kb on + strand at 816.363 kb on - strand at 816.365 kb on - strand at 816.366 kb on + strand at 816.366 kb on + strand at 816.367 kb on - strand at 816.417 kb on - strand at 816.417 kb on - strand at 816.541 kb on - strand at 816.541 kb on - strand at 816.544 kb on - strand at 816.588 kb on - strand at 816.625 kb on - strand at 816.688 kb on + strand, within BT0662 at 816.700 kb on + strand, within BT0662 at 816.701 kb on - strand, within BT0662 at 816.707 kb on - strand, within BT0662 at 816.745 kb on - strand, within BT0662 at 816.745 kb on - strand, within BT0662 at 816.766 kb on + strand, within BT0662 at 816.800 kb on + strand, within BT0662 at 816.843 kb on + strand, within BT0662 at 816.843 kb on + strand, within BT0662 at 816.853 kb on - strand, within BT0662 at 816.891 kb on + strand, within BT0662 at 816.954 kb on - strand, within BT0662 at 816.954 kb on - strand, within BT0662 at 816.997 kb on - strand, within BT0662
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM remove 814,507 - +0.2 814,645 + -1.4 814,646 - -1.4 814,763 - -2.8 814,879 + -1.4 814,902 + -0.8 815,043 + BT0661 0.15 -1.4 815,043 + BT0661 0.15 -1.8 815,044 - BT0661 0.15 -1.8 815,190 + BT0661 0.26 -0.8 815,197 + BT0661 0.27 -0.8 815,220 - BT0661 0.29 -2.1 815,258 - BT0661 0.32 -1.4 815,262 + BT0661 0.32 -0.8 815,305 + BT0661 0.36 -1.4 815,322 - BT0661 0.37 -3.4 815,556 + BT0661 0.56 +1.8 815,570 + BT0661 0.57 -2.0 815,581 - BT0661 0.58 -1.8 815,637 - BT0661 0.63 -1.4 815,690 - BT0661 0.67 -2.8 815,916 + BT0661 0.86 -1.4 815,917 - BT0661 0.86 -1.8 815,924 + BT0661 0.86 -0.9 815,978 - +0.2 816,033 - +0.2 816,064 + +0.2 816,363 - +0.5 816,365 - -2.1 816,366 + -2.4 816,366 + -1.8 816,367 - -3.8 816,417 - -0.8 816,417 - -0.8 816,541 - -1.8 816,541 - -1.8 816,544 - +0.8 816,588 - +1.0 816,625 - +0.2 816,688 + BT0662 0.13 +2.5 816,700 + BT0662 0.14 -1.4 816,701 - BT0662 0.14 -0.8 816,707 - BT0662 0.14 -0.8 816,745 - BT0662 0.16 -2.6 816,745 - BT0662 0.16 +2.8 816,766 + BT0662 0.18 +0.2 816,800 + BT0662 0.19 -1.8 816,843 + BT0662 0.22 -2.1 816,843 + BT0662 0.22 +0.2 816,853 - BT0662 0.22 +0.2 816,891 + BT0662 0.24 -1.4 816,954 - BT0662 0.28 +0.2 816,954 - BT0662 0.28 -1.8 816,997 - BT0662 0.30 -0.8
Or see this region's nucleotide sequence