Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0596

Experiment: Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0595 and BT0596 are separated by 349 nucleotidesBT0596 and BT0597 are separated by 7 nucleotidesBT0597 and BT0598 are separated by 53 nucleotides BT0595: BT0595 - integrase (NCBI ptt file), at 734,869 to 735,825 BT0595 BT0596: BT0596 - putative transcriptional regulator (NCBI ptt file), at 736,175 to 736,753 BT0596 BT0597: BT0597 - conserved hypothetical protein (NCBI ptt file), at 736,761 to 737,114 BT0597 BT0598: BT0598 - putative nucleoside-diphosphate sugar epimerases/dehydrase (NCBI ptt file), at 737,168 to 739,093 BT0598 Position (kb) 736 737Strain fitness (log2 ratio) -3 -2 -1 0 1at 735.184 kb on + strand, within BT0595at 735.184 kb on + strand, within BT0595at 735.187 kb on - strand, within BT0595at 735.367 kb on - strand, within BT0595at 735.432 kb on + strand, within BT0595at 735.433 kb on - strand, within BT0595at 735.542 kb on - strand, within BT0595at 735.712 kb on - strand, within BT0595at 735.717 kb on + strand, within BT0595at 735.954 kb on - strandat 736.081 kb on + strandat 736.256 kb on + strand, within BT0596at 736.654 kb on - strand, within BT0596at 737.536 kb on - strand, within BT0598at 737.710 kb on + strand, within BT0598

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM
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735,184 + BT0595 0.33 +0.1
735,184 + BT0595 0.33 -2.4
735,187 - BT0595 0.33 -0.9
735,367 - BT0595 0.52 -2.3
735,432 + BT0595 0.59 -3.4
735,433 - BT0595 0.59 -0.9
735,542 - BT0595 0.70 +0.1
735,712 - BT0595 0.88 -0.9
735,717 + BT0595 0.89 -2.2
735,954 - -0.1
736,081 + -0.9
736,256 + BT0596 0.14 -2.7
736,654 - BT0596 0.83 -1.9
737,536 - BT0598 0.19 -1.9
737,710 + BT0598 0.28 -2.2

Or see this region's nucleotide sequence