Experiment: Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0523 and BT0524 are separated by 12 nucleotides BT0524 and BT0525 are separated by 241 nucleotides
BT0523: BT0523 - putative glycosyltransferase (NCBI ptt file), at 645,248 to 646,408
BT0523
BT0524: BT0524 - putative two-component system response regulator (NCBI ptt file), at 646,421 to 646,786
BT0524
BT0525: BT0525 - outer membrane protein, function unknown (NCBI ptt file), at 647,028 to 649,490
BT0525
Position (kb) 646
647 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 645.498 kb on - strand, within BT0523 at 645.500 kb on - strand, within BT0523 at 645.506 kb on - strand, within BT0523 at 645.506 kb on - strand, within BT0523 at 645.552 kb on + strand, within BT0523 at 645.553 kb on - strand, within BT0523 at 645.734 kb on + strand, within BT0523 at 645.735 kb on - strand, within BT0523 at 645.813 kb on + strand, within BT0523 at 645.860 kb on + strand, within BT0523 at 645.913 kb on + strand, within BT0523 at 645.947 kb on + strand, within BT0523 at 645.948 kb on - strand, within BT0523 at 645.953 kb on + strand, within BT0523 at 646.112 kb on - strand, within BT0523 at 646.112 kb on - strand, within BT0523 at 646.120 kb on + strand, within BT0523 at 646.123 kb on + strand, within BT0523 at 646.148 kb on - strand, within BT0523 at 646.160 kb on - strand, within BT0523 at 646.163 kb on - strand, within BT0523 at 646.178 kb on + strand, within BT0523 at 646.178 kb on + strand, within BT0523 at 646.179 kb on - strand, within BT0523 at 646.187 kb on - strand, within BT0523 at 646.287 kb on - strand, within BT0523 at 646.303 kb on + strand at 646.332 kb on + strand at 646.333 kb on - strand at 646.367 kb on + strand at 646.393 kb on - strand at 646.393 kb on - strand at 646.526 kb on - strand, within BT0524 at 646.588 kb on - strand, within BT0524 at 646.621 kb on + strand, within BT0524 at 646.654 kb on + strand, within BT0524 at 646.655 kb on - strand, within BT0524 at 646.655 kb on - strand, within BT0524 at 646.674 kb on - strand, within BT0524 at 646.702 kb on + strand, within BT0524 at 646.702 kb on + strand, within BT0524 at 646.711 kb on - strand, within BT0524 at 646.726 kb on - strand, within BT0524 at 646.726 kb on - strand, within BT0524 at 646.728 kb on - strand, within BT0524 at 646.729 kb on + strand, within BT0524 at 646.729 kb on + strand, within BT0524 at 646.730 kb on - strand, within BT0524 at 646.827 kb on + strand at 646.828 kb on - strand at 646.837 kb on - strand at 646.956 kb on + strand at 646.956 kb on + strand at 646.956 kb on + strand at 647.037 kb on - strand at 647.150 kb on - strand at 647.214 kb on - strand at 647.307 kb on + strand, within BT0525 at 647.308 kb on - strand, within BT0525 at 647.338 kb on - strand, within BT0525 at 647.385 kb on + strand, within BT0525 at 647.385 kb on + strand, within BT0525 at 647.421 kb on - strand, within BT0525 at 647.427 kb on - strand, within BT0525 at 647.527 kb on + strand, within BT0525 at 647.528 kb on - strand, within BT0525 at 647.583 kb on - strand, within BT0525 at 647.680 kb on - strand, within BT0525 at 647.712 kb on - strand, within BT0525 at 647.723 kb on + strand, within BT0525 at 647.723 kb on + strand, within BT0525 at 647.724 kb on - strand, within BT0525 at 647.731 kb on - strand, within BT0525 at 647.784 kb on + strand, within BT0525 at 647.785 kb on - strand, within BT0525
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM remove 645,498 - BT0523 0.22 -3.3 645,500 - BT0523 0.22 -0.9 645,506 - BT0523 0.22 -0.9 645,506 - BT0523 0.22 -0.7 645,552 + BT0523 0.26 -0.9 645,553 - BT0523 0.26 -0.9 645,734 + BT0523 0.42 +0.1 645,735 - BT0523 0.42 -0.9 645,813 + BT0523 0.49 -3.1 645,860 + BT0523 0.53 -0.6 645,913 + BT0523 0.57 -0.2 645,947 + BT0523 0.60 -1.5 645,948 - BT0523 0.60 -1.9 645,953 + BT0523 0.61 -1.5 646,112 - BT0523 0.74 -1.6 646,112 - BT0523 0.74 +0.1 646,120 + BT0523 0.75 -2.7 646,123 + BT0523 0.75 +0.1 646,148 - BT0523 0.78 +0.1 646,160 - BT0523 0.79 +0.1 646,163 - BT0523 0.79 -3.2 646,178 + BT0523 0.80 -1.5 646,178 + BT0523 0.80 +0.1 646,179 - BT0523 0.80 +0.1 646,187 - BT0523 0.81 +0.1 646,287 - BT0523 0.89 -0.6 646,303 + +1.5 646,332 + -2.2 646,333 - -1.3 646,367 + -1.9 646,393 - +1.1 646,393 - -0.6 646,526 - BT0524 0.29 +0.1 646,588 - BT0524 0.46 +1.7 646,621 + BT0524 0.55 -1.9 646,654 + BT0524 0.64 -3.7 646,655 - BT0524 0.64 -3.2 646,655 - BT0524 0.64 -1.8 646,674 - BT0524 0.69 -1.9 646,702 + BT0524 0.77 -3.1 646,702 + BT0524 0.77 -0.3 646,711 - BT0524 0.79 -3.1 646,726 - BT0524 0.83 -2.2 646,726 - BT0524 0.83 -0.9 646,728 - BT0524 0.84 -2.4 646,729 + BT0524 0.84 -1.5 646,729 + BT0524 0.84 +2.4 646,730 - BT0524 0.84 -3.6 646,827 + -0.6 646,828 - -0.9 646,837 - -0.0 646,956 + +0.7 646,956 + -0.8 646,956 + -1.5 647,037 - +1.1 647,150 - -1.5 647,214 - +0.1 647,307 + BT0525 0.11 -1.9 647,308 - BT0525 0.11 +0.1 647,338 - BT0525 0.13 +0.1 647,385 + BT0525 0.14 +0.1 647,385 + BT0525 0.14 +0.1 647,421 - BT0525 0.16 +0.1 647,427 - BT0525 0.16 -1.9 647,527 + BT0525 0.20 -2.2 647,528 - BT0525 0.20 +0.1 647,583 - BT0525 0.23 +0.1 647,680 - BT0525 0.26 -1.3 647,712 - BT0525 0.28 +1.7 647,723 + BT0525 0.28 -4.0 647,723 + BT0525 0.28 -0.9 647,724 - BT0525 0.28 +0.1 647,731 - BT0525 0.29 -0.8 647,784 + BT0525 0.31 +0.1 647,785 - BT0525 0.31 -1.8
Or see this region's nucleotide sequence