Experiment: Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0399 and BT0400 are separated by 14 nucleotides BT0400 and BT0401 overlap by 4 nucleotides BT0401 and BT0402 are separated by 251 nucleotides BT0402 and BT0403 are separated by 7 nucleotides
BT0399: BT0399 - tyrosine-protein kinase ptk involved in exopolysaccharide biosynthesis (NCBI ptt file), at 487,418 to 488,563
BT0399
BT0400: BT0400 - putative tyrosine-protein kinase in capsular polysaccharide biosynthesis region (NCBI ptt file), at 488,578 to 489,867
BT0400
BT0401: BT0401 - hypothetical protein (NCBI ptt file), at 489,864 to 490,082
BT0401
BT0402: BT0402 - hypothetical protein (NCBI ptt file), at 490,334 to 490,843
BT0402
BT0403: BT0403 - hypothetical protein (NCBI ptt file), at 490,851 to 491,348
BT0403
Position (kb) 488
489
490 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 487.661 kb on - strand, within BT0399 at 487.771 kb on - strand, within BT0399 at 487.771 kb on - strand, within BT0399 at 487.894 kb on - strand, within BT0399 at 487.909 kb on + strand, within BT0399 at 487.909 kb on - strand, within BT0399 at 487.917 kb on + strand, within BT0399 at 487.925 kb on - strand, within BT0399 at 487.929 kb on + strand, within BT0399 at 488.077 kb on + strand, within BT0399 at 488.080 kb on - strand, within BT0399 at 488.137 kb on + strand, within BT0399 at 488.312 kb on - strand, within BT0399 at 488.375 kb on - strand, within BT0399 at 488.453 kb on - strand at 488.487 kb on - strand at 488.631 kb on + strand at 488.632 kb on - strand at 488.638 kb on - strand at 488.671 kb on - strand at 488.750 kb on - strand, within BT0400 at 489.208 kb on - strand, within BT0400 at 489.723 kb on + strand, within BT0400 at 489.787 kb on + strand at 490.026 kb on + strand, within BT0401 at 490.070 kb on - strand at 490.103 kb on - strand at 490.146 kb on + strand at 490.187 kb on + strand at 490.266 kb on - strand at 490.318 kb on + strand at 490.332 kb on + strand at 490.360 kb on - strand at 490.474 kb on + strand, within BT0402 at 490.474 kb on + strand, within BT0402 at 490.614 kb on - strand, within BT0402 at 490.667 kb on - strand, within BT0402 at 490.667 kb on - strand, within BT0402 at 490.714 kb on - strand, within BT0402
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM remove 487,661 - BT0399 0.21 -2.5 487,771 - BT0399 0.31 -1.9 487,771 - BT0399 0.31 +0.1 487,894 - BT0399 0.42 -1.1 487,909 + BT0399 0.43 +0.1 487,909 - BT0399 0.43 -0.4 487,917 + BT0399 0.44 -0.9 487,925 - BT0399 0.44 -0.9 487,929 + BT0399 0.45 -3.2 488,077 + BT0399 0.58 -3.1 488,080 - BT0399 0.58 +0.1 488,137 + BT0399 0.63 -1.9 488,312 - BT0399 0.78 -2.2 488,375 - BT0399 0.84 -2.2 488,453 - +0.1 488,487 - +0.1 488,631 + -2.9 488,632 - -0.9 488,638 - +1.1 488,671 - -1.6 488,750 - BT0400 0.13 -2.5 489,208 - BT0400 0.49 -4.4 489,723 + BT0400 0.89 +0.1 489,787 + +2.0 490,026 + BT0401 0.74 -0.9 490,070 - -1.9 490,103 - +0.7 490,146 + -1.5 490,187 + -2.9 490,266 - +0.1 490,318 + +1.1 490,332 + +0.1 490,360 - -0.8 490,474 + BT0402 0.27 +0.9 490,474 + BT0402 0.27 -2.9 490,614 - BT0402 0.55 -1.9 490,667 - BT0402 0.65 +1.1 490,667 - BT0402 0.65 +0.1 490,714 - BT0402 0.75 -2.9
Or see this region's nucleotide sequence