Experiment: Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0192 and BT0193 are separated by 6 nucleotides BT0193 and BT0194 are separated by 1 nucleotides
BT0192: BT0192 - cell surface protein (NCBI ptt file), at 205,007 to 206,974
BT0192
BT0193: BT0193 - conserved hypothetical protein (NCBI ptt file), at 206,981 to 207,862
BT0193
BT0194: BT0194 - hypothetical protein (NCBI ptt file), at 207,864 to 208,922
BT0194
Position (kb) 206
207
208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 206.054 kb on - strand at 206.064 kb on - strand, within BT0192 at 206.098 kb on + strand, within BT0192 at 206.099 kb on - strand, within BT0192 at 206.146 kb on - strand, within BT0192 at 206.351 kb on - strand, within BT0192 at 206.351 kb on - strand, within BT0192 at 206.375 kb on - strand, within BT0192 at 206.471 kb on + strand, within BT0192 at 206.578 kb on - strand, within BT0192 at 206.628 kb on - strand, within BT0192 at 206.688 kb on - strand, within BT0192 at 206.707 kb on + strand, within BT0192 at 206.708 kb on - strand, within BT0192 at 206.762 kb on - strand, within BT0192 at 206.875 kb on + strand at 206.947 kb on + strand at 207.430 kb on + strand, within BT0193 at 207.430 kb on + strand, within BT0193 at 207.527 kb on - strand, within BT0193 at 207.619 kb on - strand, within BT0193 at 207.640 kb on - strand, within BT0193 at 207.741 kb on - strand, within BT0193 at 207.846 kb on - strand at 207.848 kb on - strand at 207.861 kb on - strand at 207.863 kb on + strand at 207.950 kb on + strand at 208.091 kb on + strand, within BT0194 at 208.145 kb on + strand, within BT0194 at 208.264 kb on - strand, within BT0194 at 208.275 kb on + strand, within BT0194 at 208.283 kb on + strand, within BT0194 at 208.284 kb on - strand, within BT0194 at 208.284 kb on - strand, within BT0194 at 208.313 kb on + strand, within BT0194 at 208.314 kb on - strand, within BT0194 at 208.348 kb on - strand, within BT0194 at 208.501 kb on + strand, within BT0194 at 208.502 kb on - strand, within BT0194 at 208.506 kb on - strand, within BT0194 at 208.569 kb on - strand, within BT0194 at 208.613 kb on + strand, within BT0194 at 208.651 kb on - strand, within BT0194 at 208.674 kb on - strand, within BT0194
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM remove 206,054 - +0.2 206,064 - BT0192 0.54 +0.2 206,098 + BT0192 0.55 -3.7 206,099 - BT0192 0.55 -0.5 206,146 - BT0192 0.58 -1.4 206,351 - BT0192 0.68 -0.8 206,351 - BT0192 0.68 -0.8 206,375 - BT0192 0.70 +0.2 206,471 + BT0192 0.74 -3.4 206,578 - BT0192 0.80 +0.2 206,628 - BT0192 0.82 +2.2 206,688 - BT0192 0.85 -2.3 206,707 + BT0192 0.86 -2.6 206,708 - BT0192 0.86 +0.7 206,762 - BT0192 0.89 -1.2 206,875 + -2.6 206,947 + +0.2 207,430 + BT0193 0.51 -0.8 207,430 + BT0193 0.51 -2.8 207,527 - BT0193 0.62 -3.2 207,619 - BT0193 0.72 +1.2 207,640 - BT0193 0.75 -1.8 207,741 - BT0193 0.86 -1.8 207,846 - -0.8 207,848 - -0.8 207,861 - -2.6 207,863 + +0.2 207,950 + -2.4 208,091 + BT0194 0.21 +0.1 208,145 + BT0194 0.27 -1.4 208,264 - BT0194 0.38 -3.3 208,275 + BT0194 0.39 -1.4 208,283 + BT0194 0.40 -0.9 208,284 - BT0194 0.40 +0.6 208,284 - BT0194 0.40 -0.9 208,313 + BT0194 0.42 -1.2 208,314 - BT0194 0.42 -1.9 208,348 - BT0194 0.46 +0.7 208,501 + BT0194 0.60 -0.3 208,502 - BT0194 0.60 -2.2 208,506 - BT0194 0.61 +1.1 208,569 - BT0194 0.67 -0.7 208,613 + BT0194 0.71 +0.7 208,651 - BT0194 0.74 +0.1 208,674 - BT0194 0.76 +2.0
Or see this region's nucleotide sequence