Experiment: Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0085 and BT0086 are separated by 2 nucleotides BT0086 and BT0087 are separated by 33 nucleotides BT0087 and BT0088 overlap by 26 nucleotides BT0088 and BT0089 are separated by 3 nucleotides BT0089 and BT0090 are separated by 12 nucleotides
BT0085: BT0085 - conserved protein found in conjugate transposon (NCBI ptt file), at 79,544 to 80,122
BT0085
BT0086: BT0086 - conserved protein found in conjugate transposon (NCBI ptt file), at 80,125 to 81,033
BT0086
BT0087: BT0087 - conserved protein found in conjugate transposon (NCBI ptt file), at 81,067 to 82,452
BT0087
BT0088: BT0088 - conserved protein found in conjugate transposon (NCBI ptt file), at 82,427 to 82,732
BT0088
BT0089: BT0089 - conserved protein found in conjugate transposon (NCBI ptt file), at 82,736 to 83,359
BT0089
BT0090: BT0090 - conserved protein found in conjugate transposon (NCBI ptt file), at 83,372 to 84,397
BT0090
Position (kb) 81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.101 kb on + strand at 80.111 kb on + strand at 80.234 kb on - strand, within BT0086 at 80.270 kb on + strand, within BT0086 at 80.271 kb on - strand, within BT0086 at 80.271 kb on - strand, within BT0086 at 80.317 kb on - strand, within BT0086 at 80.472 kb on - strand, within BT0086 at 80.570 kb on - strand, within BT0086 at 80.709 kb on + strand, within BT0086 at 80.779 kb on - strand, within BT0086 at 80.831 kb on + strand, within BT0086 at 80.877 kb on + strand, within BT0086 at 80.881 kb on + strand, within BT0086 at 80.906 kb on - strand, within BT0086 at 80.913 kb on - strand, within BT0086 at 81.068 kb on + strand at 81.121 kb on + strand at 81.146 kb on + strand at 81.177 kb on + strand at 82.021 kb on + strand, within BT0087 at 82.287 kb on + strand, within BT0087 at 82.287 kb on + strand, within BT0087 at 82.287 kb on + strand, within BT0087 at 82.477 kb on + strand, within BT0088 at 82.523 kb on + strand, within BT0088 at 82.628 kb on + strand, within BT0088 at 82.807 kb on + strand, within BT0089 at 82.810 kb on + strand, within BT0089 at 82.949 kb on + strand, within BT0089 at 82.949 kb on + strand, within BT0089 at 82.992 kb on + strand, within BT0089 at 83.373 kb on + strand at 83.390 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM remove 80,101 + -0.8 80,111 + -2.6 80,234 - BT0086 0.12 -0.2 80,270 + BT0086 0.16 -0.8 80,271 - BT0086 0.16 -1.4 80,271 - BT0086 0.16 +1.0 80,317 - BT0086 0.21 +0.2 80,472 - BT0086 0.38 +0.0 80,570 - BT0086 0.49 -2.0 80,709 + BT0086 0.64 -1.8 80,779 - BT0086 0.72 -1.4 80,831 + BT0086 0.78 -1.8 80,877 + BT0086 0.83 +0.4 80,881 + BT0086 0.83 -1.2 80,906 - BT0086 0.86 -0.4 80,913 - BT0086 0.87 -1.2 81,068 + -3.0 81,121 + +0.4 81,146 + +0.4 81,177 + +0.2 82,021 + BT0087 0.69 -1.8 82,287 + BT0087 0.88 -1.8 82,287 + BT0087 0.88 -1.8 82,287 + BT0087 0.88 -2.2 82,477 + BT0088 0.16 -0.9 82,523 + BT0088 0.31 -1.8 82,628 + BT0088 0.66 -0.2 82,807 + BT0089 0.11 -1.8 82,810 + BT0089 0.12 -1.4 82,949 + BT0089 0.34 -3.1 82,949 + BT0089 0.34 +0.9 82,992 + BT0089 0.41 -0.8 83,373 + -1.8 83,390 + -3.3
Or see this region's nucleotide sequence