Experiment: KB with Leucodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0036 and Psyr_0037 are separated by 165 nucleotides Psyr_0037 and Psyr_0038 are separated by 150 nucleotides Psyr_0038 and Psyr_0039 are separated by 137 nucleotides Psyr_0039 and Psyr_0040 are separated by 212 nucleotides Psyr_0040 and Psyr_0041 are separated by 118 nucleotides Psyr_0041 and Psyr_0042 are separated by 0 nucleotides
Psyr_0036: Psyr_0036 - protein of unknown function DUF883, at 40,264 to 40,590
_0036
Psyr_0037: Psyr_0037 - Protein of unknown function DUF1458, at 40,756 to 40,971
_0037
Psyr_0038: Psyr_0038 - Protein of unknown function DUF1161, at 41,122 to 41,346
_0038
Psyr_0039: Psyr_0039 - luciferase, at 41,484 to 42,485
_0039
Psyr_0040: Psyr_0040 - OsmC-like protein, at 42,698 to 43,129
_0040
Psyr_0041: Psyr_0041 - Protein of unknown function DUF1161, at 43,248 to 43,481
_0041
Psyr_0042: Psyr_0042 - lipoprotein, putative, at 43,482 to 43,970
_0042
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 40.552 kb on - strand, within Psyr_0036 at 40.552 kb on - strand, within Psyr_0036 at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.584 kb on + strand at 40.584 kb on + strand at 40.720 kb on + strand at 40.720 kb on + strand at 40.720 kb on + strand at 40.720 kb on + strand at 40.721 kb on - strand at 40.721 kb on - strand at 40.721 kb on - strand at 40.721 kb on - strand at 40.722 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.775 kb on - strand at 40.775 kb on - strand at 40.775 kb on - strand at 40.934 kb on + strand, within Psyr_0037 at 40.934 kb on + strand, within Psyr_0037 at 40.935 kb on - strand, within Psyr_0037 at 40.969 kb on + strand at 40.969 kb on + strand at 40.970 kb on - strand at 40.970 kb on - strand at 41.006 kb on + strand at 41.016 kb on + strand at 41.017 kb on - strand at 41.017 kb on - strand at 41.030 kb on + strand at 41.030 kb on + strand at 41.144 kb on + strand at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.249 kb on - strand, within Psyr_0038 at 41.249 kb on - strand, within Psyr_0038 at 41.515 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.555 kb on + strand at 41.655 kb on + strand, within Psyr_0039 at 41.756 kb on - strand, within Psyr_0039 at 41.774 kb on - strand, within Psyr_0039 at 41.774 kb on - strand, within Psyr_0039 at 41.774 kb on - strand, within Psyr_0039 at 41.827 kb on + strand, within Psyr_0039 at 41.828 kb on - strand, within Psyr_0039 at 41.828 kb on - strand, within Psyr_0039 at 41.828 kb on - strand, within Psyr_0039 at 41.869 kb on + strand, within Psyr_0039 at 41.893 kb on + strand, within Psyr_0039 at 41.894 kb on - strand, within Psyr_0039 at 41.894 kb on - strand, within Psyr_0039 at 42.049 kb on + strand, within Psyr_0039 at 42.049 kb on + strand, within Psyr_0039 at 42.049 kb on + strand, within Psyr_0039 at 42.050 kb on - strand, within Psyr_0039 at 42.659 kb on + strand at 42.660 kb on - strand at 42.798 kb on - strand, within Psyr_0040 at 42.798 kb on - strand, within Psyr_0040 at 42.935 kb on - strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.964 kb on - strand, within Psyr_0040 at 42.964 kb on - strand, within Psyr_0040 at 42.964 kb on - strand, within Psyr_0040 at 43.114 kb on + strand at 43.114 kb on + strand at 43.114 kb on + strand at 43.114 kb on + strand at 43.115 kb on - strand at 43.115 kb on - strand at 43.115 kb on - strand at 43.115 kb on - strand at 43.115 kb on - strand at 43.115 kb on - strand at 43.169 kb on + strand at 43.169 kb on + strand at 43.170 kb on - strand at 43.170 kb on - strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.179 kb on - strand at 43.179 kb on - strand at 43.179 kb on - strand at 43.180 kb on + strand at 43.180 kb on + strand at 43.180 kb on + strand at 43.180 kb on + strand at 43.181 kb on - strand at 43.181 kb on - strand at 43.181 kb on - strand at 43.230 kb on + strand at 43.230 kb on + strand at 43.260 kb on - strand at 43.374 kb on + strand, within Psyr_0041 at 43.374 kb on + strand, within Psyr_0041 at 43.375 kb on - strand, within Psyr_0041 at 43.394 kb on + strand, within Psyr_0041 at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Leucodin 10 mM remove 40,552 - Psyr_0036 0.88 +0.3 40,552 - Psyr_0036 0.88 -1.0 40,581 + +0.3 40,581 + -0.3 40,581 + -0.7 40,581 + +0.1 40,581 + +0.6 40,581 + +0.2 40,581 + +0.2 40,581 + +0.6 40,582 - +0.2 40,582 - -0.2 40,582 - -0.3 40,582 - -0.8 40,582 - +0.6 40,582 - -0.0 40,582 - -0.8 40,582 - -0.2 40,582 - -0.6 40,584 + -0.6 40,584 + +2.0 40,720 + +0.2 40,720 + +1.4 40,720 + +1.0 40,720 + -0.2 40,721 - +0.4 40,721 - +0.4 40,721 - +1.5 40,721 - +0.1 40,722 + +0.5 40,774 + +1.0 40,774 + -0.6 40,774 + -1.3 40,774 + -0.1 40,774 + +0.8 40,774 + -1.2 40,774 + -0.4 40,775 - -1.0 40,775 - +0.7 40,775 - +0.5 40,934 + Psyr_0037 0.82 +0.3 40,934 + Psyr_0037 0.82 +1.1 40,935 - Psyr_0037 0.83 +0.0 40,969 + +0.5 40,969 + +0.4 40,970 - -2.1 40,970 - +0.5 41,006 + +1.0 41,016 + -0.0 41,017 - +0.1 41,017 - +0.2 41,030 + -0.3 41,030 + +0.4 41,144 + -0.4 41,248 + Psyr_0038 0.56 -0.3 41,248 + Psyr_0038 0.56 -0.2 41,248 + Psyr_0038 0.56 -0.9 41,248 + Psyr_0038 0.56 +2.8 41,248 + Psyr_0038 0.56 +1.2 41,248 + Psyr_0038 0.56 -0.3 41,249 - Psyr_0038 0.56 -0.6 41,249 - Psyr_0038 0.56 +0.0 41,515 + -0.9 41,542 + -0.7 41,542 + +0.1 41,542 + -0.2 41,542 + -0.3 41,542 + -0.4 41,542 + +0.7 41,542 + +0.8 41,542 + -0.7 41,542 + -0.5 41,543 - -1.0 41,543 - -1.4 41,543 - +0.1 41,543 - -0.2 41,543 - -0.8 41,543 - -1.2 41,543 - +1.2 41,543 - -0.3 41,543 - +0.2 41,543 - +0.3 41,543 - -1.4 41,543 - +0.4 41,543 - -0.5 41,543 - +0.3 41,543 - +0.1 41,555 + +0.6 41,655 + Psyr_0039 0.17 -1.2 41,756 - Psyr_0039 0.27 -0.3 41,774 - Psyr_0039 0.29 -0.7 41,774 - Psyr_0039 0.29 -0.2 41,774 - Psyr_0039 0.29 -1.8 41,827 + Psyr_0039 0.34 +1.9 41,828 - Psyr_0039 0.34 -0.1 41,828 - Psyr_0039 0.34 -1.0 41,828 - Psyr_0039 0.34 +0.8 41,869 + Psyr_0039 0.38 +0.1 41,893 + Psyr_0039 0.41 -0.5 41,894 - Psyr_0039 0.41 -1.4 41,894 - Psyr_0039 0.41 +0.1 42,049 + Psyr_0039 0.56 -0.9 42,049 + Psyr_0039 0.56 -0.4 42,049 + Psyr_0039 0.56 -0.3 42,050 - Psyr_0039 0.56 -0.2 42,659 + +0.8 42,660 - -0.4 42,798 - Psyr_0040 0.23 -0.3 42,798 - Psyr_0040 0.23 -0.0 42,935 - Psyr_0040 0.55 -0.1 42,963 + Psyr_0040 0.61 -0.6 42,963 + Psyr_0040 0.61 +0.8 42,963 + Psyr_0040 0.61 -0.2 42,963 + Psyr_0040 0.61 -1.1 42,963 + Psyr_0040 0.61 -0.3 42,963 + Psyr_0040 0.61 +0.0 42,963 + Psyr_0040 0.61 -0.4 42,964 - Psyr_0040 0.62 -0.1 42,964 - Psyr_0040 0.62 +0.6 42,964 - Psyr_0040 0.62 +1.4 43,114 + -0.8 43,114 + -0.3 43,114 + -0.5 43,114 + -1.1 43,115 - -0.0 43,115 - -1.9 43,115 - -0.0 43,115 - -0.6 43,115 - -0.0 43,115 - -1.5 43,169 + +0.1 43,169 + +0.8 43,170 - +1.0 43,170 - -0.3 43,178 + +0.4 43,178 + +0.4 43,178 + -0.2 43,178 + -0.6 43,178 + -0.2 43,178 + -0.9 43,178 + -1.1 43,179 - -0.2 43,179 - -0.0 43,179 - -2.3 43,180 + +0.9 43,180 + -0.3 43,180 + -0.6 43,180 + +1.1 43,181 - +0.0 43,181 - -0.5 43,181 - +1.5 43,230 + -0.9 43,230 + +0.4 43,260 - -0.9 43,374 + Psyr_0041 0.54 +0.8 43,374 + Psyr_0041 0.54 +0.1 43,375 - Psyr_0041 0.54 -0.4 43,394 + Psyr_0041 0.62 -0.0 43,461 + +0.2 43,461 + -0.9 43,461 + -1.3 43,461 + +1.1 43,461 + -1.8 43,461 + +0.3 43,461 + +0.9 43,461 + -0.5 43,461 + +1.4 43,461 + -0.2 43,462 - -0.6 43,462 - +0.2 43,462 - -0.3 43,462 - -0.5 43,462 - -0.3 43,462 - -0.8
Or see this region's nucleotide sequence