Experiment: RCH2 defined with Cobalt chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5793 and Pf6N2E2_5794 are separated by 238 nucleotides Pf6N2E2_5794 and Pf6N2E2_5795 are separated by 101 nucleotides Pf6N2E2_5795 and Pf6N2E2_5796 overlap by 1 nucleotides
Pf6N2E2_5793 - Aspartyl aminopeptidase, at 6,610,852 to 6,612,141
_5793
Pf6N2E2_5794 - Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70), at 6,612,380 to 6,613,015
_5794
Pf6N2E2_5795 - Cell division topological specificity factor MinE, at 6,613,117 to 6,613,371
_5795
Pf6N2E2_5796 - Septum site-determining protein MinD, at 6,613,371 to 6,614,144
_5796
Position (kb)
6612
6613
6614 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6611.418 kb on - strand, within Pf6N2E2_5793 at 6611.498 kb on + strand, within Pf6N2E2_5793 at 6611.513 kb on + strand, within Pf6N2E2_5793 at 6611.521 kb on + strand, within Pf6N2E2_5793 at 6611.816 kb on + strand, within Pf6N2E2_5793 at 6611.816 kb on + strand, within Pf6N2E2_5793 at 6611.984 kb on + strand, within Pf6N2E2_5793 at 6611.984 kb on + strand, within Pf6N2E2_5793 at 6611.984 kb on + strand, within Pf6N2E2_5793 at 6611.985 kb on - strand, within Pf6N2E2_5793 at 6611.985 kb on - strand, within Pf6N2E2_5793 at 6611.985 kb on - strand, within Pf6N2E2_5793 at 6611.987 kb on + strand, within Pf6N2E2_5793 at 6612.038 kb on + strand at 6612.038 kb on + strand at 6612.141 kb on + strand at 6612.173 kb on + strand at 6612.211 kb on + strand at 6612.211 kb on + strand at 6612.211 kb on + strand at 6612.211 kb on + strand at 6612.212 kb on - strand at 6612.212 kb on - strand at 6612.212 kb on - strand at 6612.212 kb on - strand at 6612.346 kb on + strand at 6612.346 kb on + strand at 6612.347 kb on - strand at 6612.381 kb on + strand at 6612.381 kb on + strand at 6612.381 kb on + strand at 6612.381 kb on + strand at 6612.381 kb on + strand at 6612.382 kb on - strand at 6612.750 kb on + strand, within Pf6N2E2_5794 at 6612.750 kb on + strand, within Pf6N2E2_5794 at 6612.750 kb on + strand, within Pf6N2E2_5794
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Cobalt chloride 0.02 mM remove 6,611,418 - Pf6N2E2_5793 0.44 -1.8 6,611,498 + Pf6N2E2_5793 0.50 -0.1 6,611,513 + Pf6N2E2_5793 0.51 -1.5 6,611,521 + Pf6N2E2_5793 0.52 -0.2 6,611,816 + Pf6N2E2_5793 0.75 +0.7 6,611,816 + Pf6N2E2_5793 0.75 -1.3 6,611,984 + Pf6N2E2_5793 0.88 -0.4 6,611,984 + Pf6N2E2_5793 0.88 +0.1 6,611,984 + Pf6N2E2_5793 0.88 -1.3 6,611,985 - Pf6N2E2_5793 0.88 -1.3 6,611,985 - Pf6N2E2_5793 0.88 -0.9 6,611,985 - Pf6N2E2_5793 0.88 +0.5 6,611,987 + Pf6N2E2_5793 0.88 -0.3 6,612,038 + -0.3 6,612,038 + -0.9 6,612,141 + -2.1 6,612,173 + +0.7 6,612,211 + -0.8 6,612,211 + -1.1 6,612,211 + +0.7 6,612,211 + +0.7 6,612,212 - -1.9 6,612,212 - -1.1 6,612,212 - -0.3 6,612,212 - -0.4 6,612,346 + -0.4 6,612,346 + -2.1 6,612,347 - +0.7 6,612,381 + +0.8 6,612,381 + -1.1 6,612,381 + +0.5 6,612,381 + -0.9 6,612,381 + +0.5 6,612,382 - +0.1 6,612,750 + Pf6N2E2_5794 0.58 -2.9 6,612,750 + Pf6N2E2_5794 0.58 -0.3 6,612,750 + Pf6N2E2_5794 0.58 +0.7
Or see this region's nucleotide sequence