Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25730

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
5,741,552	-		PFLU_RS25720	0.22	-2.1
5,741,605	+		PFLU_RS25720	0.28	+0.4
5,741,605	+		PFLU_RS25720	0.28	+1.1
5,741,606	-		PFLU_RS25720	0.28	+1.6
5,741,625	+		PFLU_RS25720	0.31	+1.9
5,741,625	+		PFLU_RS25720	0.31	+0.8
5,741,625	+		PFLU_RS25720	0.31	-2.0
5,741,625	+		PFLU_RS25720	0.31	+1.4
5,741,625	+		PFLU_RS25720	0.31	-0.3
5,741,625	+		PFLU_RS25720	0.31	-0.7
5,741,625	+		PFLU_RS25720	0.31	+1.5
5,741,625	+		PFLU_RS25720	0.31	+1.3
5,741,625	+		PFLU_RS25720	0.31	+4.0
5,741,625	+		PFLU_RS25720	0.31	-0.8
5,741,625	+		PFLU_RS25720	0.31	+2.0
5,741,625	+		PFLU_RS25720	0.31	-0.2
5,741,625	+		PFLU_RS25720	0.31	-0.2
5,741,626	-		PFLU_RS25720	0.31	-2.8
5,741,626	-		PFLU_RS25720	0.31	-1.6
5,741,626	-		PFLU_RS25720	0.31	-1.9
5,741,626	-		PFLU_RS25720	0.31	-2.4
5,741,626	-		PFLU_RS25720	0.31	-2.7
5,741,626	-		PFLU_RS25720	0.31	-1.8
5,741,626	-		PFLU_RS25720	0.31	-1.1
5,741,647	+		PFLU_RS25720	0.33	+0.4
5,741,647	+		PFLU_RS25720	0.33	+0.3
5,741,647	+		PFLU_RS25720	0.33	+1.2
5,741,647	+		PFLU_RS25720	0.33	+1.2
5,741,647	+		PFLU_RS25720	0.33	-1.8
5,741,667	+		PFLU_RS25720	0.35	-2.0
5,741,667	+		PFLU_RS25720	0.35	-1.9
5,741,667	+		PFLU_RS25720	0.35	-1.9
5,741,667	+		PFLU_RS25720	0.35	+1.9
5,741,683	+		PFLU_RS25720	0.37	-0.9
5,741,684	-		PFLU_RS25720	0.37	+1.4
5,741,684	-		PFLU_RS25720	0.37	-1.3
5,741,684	-		PFLU_RS25720	0.37	-2.1
5,741,684	-		PFLU_RS25720	0.37	-1.9
5,741,684	-		PFLU_RS25720	0.37	+0.9
5,741,684	-		PFLU_RS25720	0.37	-1.9
5,741,684	-		PFLU_RS25720	0.37	-2.7
5,741,684	-		PFLU_RS25720	0.37	+3.7
5,741,691	+		PFLU_RS25720	0.38	+3.1
5,741,691	+		PFLU_RS25720	0.38	+0.8
5,741,691	+		PFLU_RS25720	0.38	+0.4
5,741,691	+		PFLU_RS25720	0.38	-1.6
5,741,691	+		PFLU_RS25720	0.38	-1.4
5,741,691	+		PFLU_RS25720	0.38	-1.3
5,741,692	-		PFLU_RS25720	0.38	-2.1
5,741,692	-		PFLU_RS25720	0.38	-0.9
5,741,692	-		PFLU_RS25720	0.38	+1.7
5,741,692	-		PFLU_RS25720	0.38	-1.4
5,741,692	-		PFLU_RS25720	0.38	-1.4
5,741,695	+		PFLU_RS25720	0.39	+0.1
5,741,695	+		PFLU_RS25720	0.39	+4.3
5,741,695	+		PFLU_RS25720	0.39	+2.4
5,741,695	+		PFLU_RS25720	0.39	-1.0
5,741,695	+		PFLU_RS25720	0.39	-1.0
5,741,695	+		PFLU_RS25720	0.39	-1.2
5,741,695	+		PFLU_RS25720	0.39	+0.8
5,741,696	-		PFLU_RS25720	0.39	-1.9
5,741,696	-		PFLU_RS25720	0.39	-0.2
5,741,696	-		PFLU_RS25720	0.39	-2.2
5,741,696	-		PFLU_RS25720	0.39	-3.2
5,741,696	-		PFLU_RS25720	0.39	-1.3
5,741,696	-		PFLU_RS25720	0.39	+0.5
5,741,696	-		PFLU_RS25720	0.39	+1.4
5,741,744	+		PFLU_RS25720	0.44	-0.4
5,741,745	-		PFLU_RS25720	0.44	-2.7
5,741,745	-		PFLU_RS25720	0.44	-0.9
5,741,745	-		PFLU_RS25720	0.44	+2.4
5,741,770	+		PFLU_RS25720	0.47	-1.4
5,741,771	-		PFLU_RS25720	0.47	-2.2
5,741,771	-		PFLU_RS25720	0.47	-0.0
5,741,771	-		PFLU_RS25720	0.47	+1.6
5,741,778	+		PFLU_RS25720	0.48	-1.1
5,741,778	+		PFLU_RS25720	0.48	-0.4
5,741,825	+		PFLU_RS25720	0.53	-1.8
5,741,825	+		PFLU_RS25720	0.53	+0.8
5,741,826	-		PFLU_RS25720	0.53	-1.6
5,741,826	-		PFLU_RS25720	0.53	+1.8
5,741,860	+		PFLU_RS25720	0.57	+0.1
5,741,860	+		PFLU_RS25720	0.57	+2.5
5,741,860	+		PFLU_RS25720	0.57	+0.4
5,741,860	+		PFLU_RS25720	0.57	-1.7
5,741,860	+		PFLU_RS25720	0.57	-0.2
5,741,860	+		PFLU_RS25720	0.57	+1.6
5,741,860	+		PFLU_RS25720	0.57	-2.0
5,741,861	-		PFLU_RS25720	0.57	-1.1
5,741,861	-		PFLU_RS25720	0.57	-1.2
5,741,861	-		PFLU_RS25720	0.57	-2.0
5,741,861	-		PFLU_RS25720	0.57	-2.0
5,741,861	-		PFLU_RS25720	0.57	-1.4
5,741,861	-		PFLU_RS25720	0.57	-0.1
5,741,866	+		PFLU_RS25720	0.58	+0.6
5,741,866	+		PFLU_RS25720	0.58	-1.6
5,741,867	-		PFLU_RS25720	0.58	-1.0
5,741,867	-		PFLU_RS25720	0.58	-0.9
5,741,867	-		PFLU_RS25720	0.58	-1.9
5,741,959	+		PFLU_RS25720	0.68	-1.2
5,741,959	+		PFLU_RS25720	0.68	-0.0
5,741,960	-		PFLU_RS25720	0.68	-0.6
5,741,960	-		PFLU_RS25720	0.68	-1.8
5,741,960	-		PFLU_RS25720	0.68	+1.2
5,741,960	-		PFLU_RS25720	0.68	-2.3
5,742,049	+		PFLU_RS25720	0.78	-1.5
5,742,093	-		PFLU_RS25720	0.83	-0.8
5,742,093	-		PFLU_RS25720	0.83	+1.5
5,742,093	-		PFLU_RS25720	0.83	-2.0
5,742,093	-		PFLU_RS25720	0.83	-1.1
5,742,093	-		PFLU_RS25720	0.83	-1.8
5,742,200	+				+2.1
5,742,200	+				+4.4
5,742,201	-				-2.1
5,742,269	+				+1.0
5,742,270	-				+0.8
5,742,306	+				-1.1
5,742,306	+				-1.2
5,742,306	+				+0.6
5,742,306	+				-1.4
5,742,306	+				-2.2
5,742,306	+				-1.8
5,742,306	+				-2.3
5,742,306	+				-1.2
5,742,306	+				-0.1
5,742,306	+				-0.8
5,742,306	+				-0.9
5,742,306	+				-1.7
5,742,306	+				-0.6
5,742,306	+				-1.3
5,742,306	+				+1.1
5,742,306	+				-0.0
5,742,306	+				-2.0
5,742,306	+				-1.3
5,742,306	+				-0.4
5,742,306	+				+0.3
5,742,306	+				-1.7
5,742,306	+				-0.8
5,742,306	+				-1.7
5,742,306	+				-1.8
5,742,306	+				+0.6
5,742,306	+				-0.5
5,742,306	+				+0.9
5,742,306	+				-1.2
5,742,306	+				-1.7
5,742,306	+				-3.1
5,742,306	+				-1.3
5,742,306	+				-0.1
5,742,306	+				+0.9
5,742,306	+				-2.4
5,742,306	+				+2.7
5,742,306	+				+2.1
5,742,306	+				+0.8
5,742,306	+				+0.5
5,742,306	+				-1.6
5,742,306	+				+2.5
5,742,306	+				-1.8
5,742,306	+				-2.1
5,742,306	+				-1.0
5,742,306	+				+0.9
5,742,306	+				-2.1
5,742,306	+				-1.1
5,742,306	+				-0.5
5,742,306	+				+4.3
5,742,306	+				-2.4
5,742,306	+				+3.2
5,742,306	+				+0.5
5,742,306	+				-2.4
5,742,306	+				+2.3
5,742,306	+				-0.8
5,742,306	+				+0.2
5,742,306	+				-1.4
5,742,306	+				-1.3
5,742,306	+				-2.1
5,742,306	+				-1.8
5,742,306	+				-1.4
5,742,306	+				-1.6
5,742,306	+				-0.9
5,742,306	+				-2.1
5,742,306	+				-1.9
5,742,306	+				-1.0
5,742,306	+				-0.8
5,742,306	+				-0.1
5,742,306	+				-1.6
5,742,306	+				+3.1
5,742,306	+				-1.6
5,742,306	+				-0.3
5,742,306	+				-1.6
5,742,306	+				+0.6
5,742,306	+				-0.6
5,742,306	+				-1.0
5,742,306	+				-1.1
5,742,306	+				+1.2
5,742,306	+				-1.8
5,742,306	+				-1.2
5,742,306	+				-0.8
5,742,306	+				+0.5
5,742,306	+				-0.6
5,742,306	+				-1.6
5,742,306	+				+0.5
5,742,306	+				-1.7
5,742,306	+				-1.5
5,742,306	+				-2.5
5,742,306	+				-1.3
5,742,306	+				-1.5
5,742,306	+				-0.4
5,742,306	+				-0.6
5,742,307	-				-0.9
5,742,307	-				-1.1
5,742,307	-				+0.1
5,742,307	-				-1.8
5,742,307	-				-0.6
5,742,307	-				+0.8
5,742,307	-				+0.1
5,742,307	-				-1.3
5,742,307	-				-1.5
5,742,307	-				-1.2
5,742,307	-				-2.6
5,742,307	-				-0.3
5,742,307	-				-2.2
5,742,307	-				-1.9
5,742,307	-				-2.2
5,742,307	-				-3.5
5,742,307	-				-1.8
5,742,307	-				-2.3
5,742,307	-				-0.8
5,742,307	-				-0.6
5,742,307	-				-2.1
5,742,307	-				+0.2
5,742,307	-				-2.1
5,742,307	-				-1.2
5,742,307	-				-1.8
5,742,307	-				+1.0
5,742,307	-				+1.4
5,742,307	-				-1.5
5,742,307	-				-1.4
5,742,307	-				-1.9
5,742,307	-				-2.1
5,742,307	-				-1.5
5,742,307	-				-0.9
5,742,307	-				-1.0
5,742,307	-				-2.1
5,742,307	-				-1.9
5,742,307	-				-1.9
5,742,307	-				-2.0
5,742,307	-				-0.2
5,742,307	-				-1.7
5,742,307	-				-1.5
5,742,307	-				-0.4
5,742,307	-				-1.6
5,742,307	-				-0.8
5,742,307	-				-1.0
5,742,307	-				-2.0
5,742,307	-				-2.2
5,742,307	-				-2.3
5,742,307	-				-1.2
5,742,307	-				-1.8
5,742,307	-				-0.3
5,742,307	-				-0.6
5,742,307	-				+2.8
5,742,307	-				-2.4
5,742,307	-				-2.5
5,742,307	-				-1.1
5,742,307	-				-2.1
5,742,307	-				-1.1
5,742,307	-				-2.1
5,742,307	-				-2.2
5,742,307	-				-1.0
5,742,307	-				-3.3
5,742,307	-				-2.4
5,742,307	-				-2.0
5,742,307	-				+0.8
5,742,307	-				-2.5
5,742,307	-				-1.3
5,742,307	-				-2.1
5,742,307	-				-1.9
5,742,307	-				-0.6
5,742,307	-				-0.2
5,742,307	-				-0.9
5,742,307	-				-3.0
5,742,307	-				-0.1
5,742,307	-				-1.2
5,742,307	-				+0.0
5,742,307	-				-2.2
5,742,307	-				-1.1
5,742,307	-				-1.5
5,742,307	-				+0.0
5,742,307	-				-0.9
5,742,307	-				-1.4
5,742,307	-				+0.1
5,742,307	-				-2.1
5,742,307	-				-1.1
5,742,307	-				-1.5
5,742,307	-				-0.4
5,742,307	-				-0.1
5,742,307	-				-0.9
5,742,307	-				-1.8
5,742,307	-				-1.9
5,742,307	-				-2.1
5,742,307	-				-2.1
5,742,307	-				-1.1
5,742,307	-				-1.5
5,742,307	-				-2.0
5,742,307	-				-2.1
5,742,307	-				-0.6
5,742,307	-				-1.9
5,742,307	-				-0.3
5,742,307	-				-2.0
5,742,307	-				-1.6
5,742,307	-				-1.7
5,742,307	-				-0.5
5,742,307	-				+0.3
5,742,307	-				-1.5
5,742,307	-				-1.8
5,742,307	-				-0.8
5,742,307	-				-2.1
5,742,307	-				-0.3
5,742,307	-				+3.0
5,742,307	-				-0.2
5,742,307	-				-2.3
5,742,307	-				+0.3
5,742,312	+				-1.6
5,742,312	+				-2.1
5,742,312	+				-2.1
5,742,312	+				-1.1
5,742,312	+				-1.2
5,742,312	+				-0.8
5,742,312	+				-0.7
5,742,312	+				-0.6
5,742,312	+				-1.5
5,742,312	+				-1.5
5,742,312	+				-2.6
5,742,312	+				+0.6
5,742,313	-				+0.5
5,742,313	-				-2.6
5,742,313	-				-2.1
5,742,313	-				-1.6
5,742,345	+		PFLU_RS31330	0.24	+0.8
5,742,345	+		PFLU_RS31330	0.24	+0.8
5,742,345	+		PFLU_RS31330	0.24	-1.6
5,742,345	+		PFLU_RS31330	0.24	-0.5
5,742,346	-		PFLU_RS31330	0.24	-0.3
5,742,346	-		PFLU_RS31330	0.24	-2.5
5,742,346	-		PFLU_RS31330	0.24	-1.5
5,742,346	-		PFLU_RS31330	0.24	-0.9
5,742,346	-		PFLU_RS31330	0.24	-1.9
5,742,346	-		PFLU_RS31330	0.24	-1.2
5,742,346	-		PFLU_RS31330	0.24	-2.1
5,742,346	-		PFLU_RS31330	0.24	-0.8
5,742,346	-		PFLU_RS31330	0.24	-1.1
5,742,346	-		PFLU_RS31330	0.24	-1.1
5,742,346	-		PFLU_RS31330	0.24	-2.5
5,742,408	+		PFLU_RS31330	0.59	-2.5
5,742,408	+		PFLU_RS31330	0.59	+0.7
5,742,409	-		PFLU_RS31330	0.60	-0.2
5,742,477	+				+0.9
5,742,477	+				-0.5
5,742,477	+				-0.7
5,742,478	-				-1.1
5,742,478	-				-1.0
5,742,512	-				-0.2
5,742,592	+				-0.7
5,742,592	+				+0.1
5,742,592	+				-0.7
5,742,592	+				-0.3
5,742,592	+				+0.1
5,742,592	+				+0.0
5,742,592	+				-0.1
5,742,592	+				-0.1
5,742,592	+				+0.4
5,742,593	-				-1.5
5,742,593	-				-1.2
5,742,593	-				+0.1
5,742,593	-				-1.1
5,742,593	-				-0.9
5,742,593	-				+0.4
5,742,613	+				-1.5
5,742,613	+				-1.1
5,742,613	+				+0.6
5,742,613	+				-0.4
5,742,614	-				-0.5
5,742,614	-				-1.2
5,742,614	-				-0.5
5,742,634	+				-0.4
5,742,634	+				-2.3
5,742,634	+				-0.7
5,742,635	-				-0.7
5,742,635	-				-0.7
5,742,635	-				-1.0
5,742,635	-				-0.5
5,742,635	-				-0.2
5,742,655	+				-1.6
5,742,655	+				-0.2
5,742,655	+				-0.6
5,742,655	+				+0.5
5,742,661	+				+0.1
5,742,662	-				-1.4
5,742,662	-				-0.5
5,742,685	+				-1.4
5,742,686	-				-1.5
5,742,686	-				-0.7
5,742,730	+				+0.2
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5,743,441	+		PFLU_RS25730	0.33	+1.1
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5,744,119	+		PFLU_RS25730	0.56	-0.2
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5,744,120	-		PFLU_RS25730	0.56	-0.1
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5,744,120	-		PFLU_RS25730	0.56	-1.1
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5,744,242	+		PFLU_RS25730	0.60	-1.1
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5,744,242	+		PFLU_RS25730	0.60	-0.3
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5,744,243	-		PFLU_RS25730	0.60	-1.1
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5,744,263	+		PFLU_RS25730	0.61	-2.9
5,744,263	+		PFLU_RS25730	0.61	-1.7
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5,744,308	+		PFLU_RS25730	0.62	-1.0
5,744,308	+		PFLU_RS25730	0.62	+0.1
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5,744,496	+		PFLU_RS25730	0.69	-1.4
5,744,496	+		PFLU_RS25730	0.69	-1.0
5,744,496	+		PFLU_RS25730	0.69	-0.9
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5,744,497	-		PFLU_RS25730	0.69	+0.9
5,744,497	-		PFLU_RS25730	0.69	+0.1
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