Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15380

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
3,446,674	+		PFLU_RS15375	0.11	-1.0
3,446,674	+		PFLU_RS15375	0.11	+1.2
3,446,674	+		PFLU_RS15375	0.11	-1.6
3,446,674	+		PFLU_RS15375	0.11	-1.5
3,446,675	-		PFLU_RS15375	0.11	-1.2
3,446,675	-		PFLU_RS15375	0.11	+1.2
3,446,789	-		PFLU_RS15375	0.25	-1.8
3,446,789	-		PFLU_RS15375	0.25	-1.3
3,446,794	+		PFLU_RS15375	0.26	+2.7
3,446,794	+		PFLU_RS15375	0.26	-1.4
3,446,795	-		PFLU_RS15375	0.26	-1.7
3,446,795	-		PFLU_RS15375	0.26	-1.8
3,446,795	-		PFLU_RS15375	0.26	+0.2
3,446,795	-		PFLU_RS15375	0.26	+0.0
3,446,795	-		PFLU_RS15375	0.26	-3.2
3,446,795	-		PFLU_RS15375	0.26	+2.4
3,446,795	-		PFLU_RS15375	0.26	+0.1
3,446,827	+		PFLU_RS15375	0.30	-1.6
3,446,828	-		PFLU_RS15375	0.30	+3.2
3,446,828	-		PFLU_RS15375	0.30	-0.3
3,446,848	+		PFLU_RS15375	0.32	-1.2
3,446,849	-		PFLU_RS15375	0.32	-1.0
3,446,897	-		PFLU_RS15375	0.38	-1.9
3,446,897	-		PFLU_RS15375	0.38	-2.1
3,446,917	+		PFLU_RS15375	0.41	+2.8
3,446,918	-		PFLU_RS15375	0.41	-0.7
3,446,939	+		PFLU_RS15375	0.44	-1.1
3,446,939	+		PFLU_RS15375	0.44	-2.5
3,446,939	+		PFLU_RS15375	0.44	+3.1
3,446,939	+		PFLU_RS15375	0.44	+0.4
3,446,940	-		PFLU_RS15375	0.44	+1.1
3,446,940	-		PFLU_RS15375	0.44	+1.8
3,446,940	-		PFLU_RS15375	0.44	-0.5
3,446,940	-		PFLU_RS15375	0.44	+2.0
3,447,025	+		PFLU_RS15375	0.54	-2.4
3,447,025	+		PFLU_RS15375	0.54	+2.2
3,447,026	-		PFLU_RS15375	0.54	+1.5
3,447,077	+		PFLU_RS15375	0.61	-1.8
3,447,077	+		PFLU_RS15375	0.61	+0.3
3,447,113	+		PFLU_RS15375	0.65	-1.2
3,447,113	+		PFLU_RS15375	0.65	-2.0
3,447,113	+		PFLU_RS15375	0.65	-0.3
3,447,113	+		PFLU_RS15375	0.65	-0.6
3,447,113	+		PFLU_RS15375	0.65	+0.1
3,447,114	-		PFLU_RS15375	0.65	-1.2
3,447,114	-		PFLU_RS15375	0.65	-1.8
3,447,114	-		PFLU_RS15375	0.65	+2.1
3,447,114	-		PFLU_RS15375	0.65	+0.4
3,447,114	-		PFLU_RS15375	0.65	+5.2
3,447,211	+		PFLU_RS15375	0.77	-2.1
3,447,212	-		PFLU_RS15375	0.77	-1.5
3,447,212	-		PFLU_RS15375	0.77	-2.2
3,447,263	-		PFLU_RS15375	0.84	-2.6
3,447,280	+		PFLU_RS15375	0.86	+2.1
3,447,280	+		PFLU_RS15375	0.86	-0.6
3,447,280	+		PFLU_RS15375	0.86	+1.4
3,447,280	+		PFLU_RS15375	0.86	-1.9
3,447,280	+		PFLU_RS15375	0.86	-0.6
3,447,280	+		PFLU_RS15375	0.86	+3.8
3,447,280	+		PFLU_RS15375	0.86	-2.0
3,447,281	-		PFLU_RS15375	0.86	-1.2
3,447,281	-		PFLU_RS15375	0.86	+0.0
3,447,281	-		PFLU_RS15375	0.86	+0.1
3,447,281	-		PFLU_RS15375	0.86	+0.1
3,447,283	+		PFLU_RS15375	0.86	+4.0
3,447,283	+		PFLU_RS15375	0.86	-1.5
3,447,283	+		PFLU_RS15375	0.86	-1.8
3,447,283	+		PFLU_RS15375	0.86	-0.8
3,447,283	+		PFLU_RS15375	0.86	-0.5
3,447,283	+		PFLU_RS15375	0.86	-0.6
3,447,284	-		PFLU_RS15375	0.86	+2.7
3,447,284	-		PFLU_RS15375	0.86	-1.8
3,447,284	-		PFLU_RS15375	0.86	+1.5
3,447,461	+				-1.1
3,447,462	-				-1.5
3,447,462	-				-0.6
3,447,462	-				+4.1
3,447,499	+				-1.0
3,447,586	-				+0.7
3,447,586	-				-1.1
3,447,591	+				-1.9
3,447,592	-				-0.7
3,447,642	+				+2.2
3,447,642	+				+1.3
3,447,642	+				+2.6
3,447,643	-				-2.7
3,447,643	-				-2.6
3,447,767	+		PFLU_RS15380	0.40	-2.5
3,447,767	+		PFLU_RS15380	0.40	-3.7
3,447,767	+		PFLU_RS15380	0.40	-2.7
3,447,768	-		PFLU_RS15380	0.41	+0.5
3,447,859	+		PFLU_RS15380	0.74	-2.5
3,447,859	+		PFLU_RS15380	0.74	-2.5
3,447,860	-		PFLU_RS15380	0.74	-0.4
3,447,860	-		PFLU_RS15380	0.74	-3.0
3,447,869	+		PFLU_RS15380	0.78	-2.8
3,447,870	-		PFLU_RS15380	0.78	-0.7
3,447,905	-				-0.9
3,447,952	+				-0.2
3,447,952	+				+2.4
3,447,952	+				-0.6
3,447,952	+				-2.4
3,447,952	+				-0.4
3,447,952	+				+0.9
3,447,952	+				+1.9
3,447,952	+				-0.5
3,447,952	+				-2.2
3,447,952	+				+0.1
3,447,952	+				-0.8
3,447,952	+				+1.8
3,447,952	+				+2.5
3,447,952	+				-1.8
3,447,952	+				-0.7
3,447,953	-				-2.4
3,447,953	-				+0.9
3,447,953	-				+2.7
3,447,953	-				+1.8
3,447,953	-				+0.3
3,447,953	-				-0.4
3,447,953	-				+1.1
3,447,953	-				-2.7
3,447,953	-				-0.6
3,447,953	-				-1.8
3,447,953	-				-1.4
3,447,953	-				-2.1
3,447,953	-				+3.7
3,447,953	-				-1.9
3,447,953	-				+0.6
3,447,953	-				-0.9
3,447,953	-				-1.6
3,447,953	-				+1.1
3,447,953	-				-0.6
3,448,102	+				-0.6
3,448,102	+				+0.7
3,448,102	+				-1.4
3,448,102	+				+1.5
3,448,102	+				+2.0
3,448,102	+				-2.8
3,448,102	+				-1.3
3,448,102	+				+2.0
3,448,102	+				-0.8
3,448,102	+				+0.7
3,448,103	-				+0.8
3,448,103	-				-1.2
3,448,103	-				-0.4
3,448,103	-				+1.5
3,448,103	-				+1.4
3,448,103	-				+0.8
3,448,103	-				-1.3
3,448,103	-				-1.3
3,448,103	-				+1.8
3,448,103	-				+3.1
3,448,103	-				+1.2
3,448,103	-				-2.2
3,448,108	+				-1.6
3,448,108	+				+0.3
3,448,109	-				+2.1
3,448,109	-				+0.4
3,448,141	+				-2.1
3,448,141	+				+3.6
3,448,141	+				+1.5
3,448,141	+				-1.7
3,448,141	+				-0.7
3,448,142	-				+1.6
3,448,142	-				-0.9
3,448,142	-				-1.2
3,448,180	+				-0.0
3,448,181	-				-0.5
3,448,222	+				-1.6
3,448,222	+				+0.6
3,448,223	-				+3.1
3,448,312	+		PFLU_RS15385	0.12	+0.9
3,448,312	+		PFLU_RS15385	0.12	-0.7
3,448,312	+		PFLU_RS15385	0.12	+2.9
3,448,312	+		PFLU_RS15385	0.12	-0.9
3,448,313	-		PFLU_RS15385	0.12	+1.9
3,448,313	-		PFLU_RS15385	0.12	-1.3
3,448,313	-		PFLU_RS15385	0.12	-0.3
3,448,313	-		PFLU_RS15385	0.12	-2.1
3,448,365	-		PFLU_RS15385	0.15	+1.5
3,448,425	+		PFLU_RS15385	0.17	+2.4
3,448,495	-		PFLU_RS15385	0.20	+1.0
3,448,495	-		PFLU_RS15385	0.20	+4.2
3,448,495	-		PFLU_RS15385	0.20	+2.5
3,448,612	+		PFLU_RS15385	0.25	-1.3
3,448,612	+		PFLU_RS15385	0.25	+0.1
3,448,612	+		PFLU_RS15385	0.25	-0.5
3,448,613	-		PFLU_RS15385	0.25	-2.1
3,448,613	-		PFLU_RS15385	0.25	-2.2
3,448,678	+		PFLU_RS15385	0.27	+3.0
3,448,678	+		PFLU_RS15385	0.27	-0.1
3,448,678	+		PFLU_RS15385	0.27	+1.0
3,448,679	-		PFLU_RS15385	0.27	-1.5
3,448,679	-		PFLU_RS15385	0.27	+0.2
3,448,679	-		PFLU_RS15385	0.27	+1.8
3,448,705	+		PFLU_RS15385	0.28	+0.8
3,448,705	+		PFLU_RS15385	0.28	-0.9
3,448,705	+		PFLU_RS15385	0.28	+3.1
3,448,705	+		PFLU_RS15385	0.28	+0.5
3,448,705	+		PFLU_RS15385	0.28	-0.7
3,448,705	+		PFLU_RS15385	0.28	+0.6
3,448,705	+		PFLU_RS15385	0.28	-0.7
3,448,705	+		PFLU_RS15385	0.28	+1.5
3,448,705	+		PFLU_RS15385	0.28	+0.8
3,448,705	+		PFLU_RS15385	0.28	-0.6
3,448,706	-		PFLU_RS15385	0.29	+1.9
3,448,706	-		PFLU_RS15385	0.29	+2.4
3,448,706	-		PFLU_RS15385	0.29	+3.5
3,448,706	-		PFLU_RS15385	0.29	-0.4
3,448,706	-		PFLU_RS15385	0.29	-1.2
3,448,706	-		PFLU_RS15385	0.29	+0.8
3,448,706	-		PFLU_RS15385	0.29	-0.4