Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15295

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
3,425,294	+				-1.2
3,425,294	+				+1.2
3,425,294	+				-0.1
3,425,294	+				-1.3
3,425,294	+				-2.4
3,425,294	+				+2.3
3,425,294	+				-0.3
3,425,294	+				-1.9
3,425,294	+				+2.7
3,425,294	+				+2.2
3,425,295	-				-0.3
3,425,295	-				+2.0
3,425,295	-				+0.5
3,425,295	-				+0.6
3,425,295	-				-0.8
3,425,304	-				-0.6
3,425,323	-				-1.9
3,425,382	+				-0.7
3,425,383	-				+1.5
3,425,383	-				-2.6
3,425,472	+		PFLU_RS15290	0.19	-3.5
3,425,472	+		PFLU_RS15290	0.19	+0.3
3,425,472	+		PFLU_RS15290	0.19	+1.8
3,425,472	+		PFLU_RS15290	0.19	-2.3
3,425,472	+		PFLU_RS15290	0.19	-2.6
3,425,472	+		PFLU_RS15290	0.19	+0.5
3,425,472	+		PFLU_RS15290	0.19	+0.5
3,425,472	+		PFLU_RS15290	0.19	+1.0
3,425,472	+		PFLU_RS15290	0.19	-2.1
3,425,472	+		PFLU_RS15290	0.19	+2.4
3,425,472	+		PFLU_RS15290	0.19	-2.1
3,425,472	+		PFLU_RS15290	0.19	-1.6
3,425,472	+		PFLU_RS15290	0.19	-1.7
3,425,472	+		PFLU_RS15290	0.19	+1.1
3,425,472	+		PFLU_RS15290	0.19	-1.3
3,425,472	+		PFLU_RS15290	0.19	-0.2
3,425,472	+		PFLU_RS15290	0.19	+1.2
3,425,473	-		PFLU_RS15290	0.19	+1.7
3,425,473	-		PFLU_RS15290	0.19	-1.1
3,425,473	-		PFLU_RS15290	0.19	-0.6
3,425,473	-		PFLU_RS15290	0.19	+1.2
3,425,486	+		PFLU_RS15290	0.20	-1.2
3,425,553	+		PFLU_RS15290	0.27	+1.4
3,425,553	+		PFLU_RS15290	0.27	+0.2
3,425,553	+		PFLU_RS15290	0.27	-0.9
3,425,553	+		PFLU_RS15290	0.27	+1.7
3,425,553	+		PFLU_RS15290	0.27	+0.4
3,425,553	+		PFLU_RS15290	0.27	+0.8
3,425,554	-		PFLU_RS15290	0.27	-1.5
3,425,554	-		PFLU_RS15290	0.27	+0.3
3,425,554	-		PFLU_RS15290	0.27	+1.3
3,425,554	-		PFLU_RS15290	0.27	+0.2
3,425,554	-		PFLU_RS15290	0.27	-0.7
3,425,554	-		PFLU_RS15290	0.27	-1.6
3,425,636	+		PFLU_RS15290	0.36	-1.0
3,425,637	-		PFLU_RS15290	0.36	+0.7
3,425,637	-		PFLU_RS15290	0.36	-2.1
3,425,637	-		PFLU_RS15290	0.36	-1.5
3,425,898	+		PFLU_RS15290	0.63	-1.1
3,425,899	-		PFLU_RS15290	0.64	+2.6
3,425,899	-		PFLU_RS15290	0.64	-0.8
3,425,943	+		PFLU_RS15290	0.68	+2.6
3,425,943	+		PFLU_RS15290	0.68	+0.5
3,425,944	-		PFLU_RS15290	0.68	-0.7
3,425,944	-		PFLU_RS15290	0.68	-1.0
3,425,944	-		PFLU_RS15290	0.68	+1.0
3,425,944	-		PFLU_RS15290	0.68	-0.7
3,425,956	-		PFLU_RS15290	0.70	+0.9
3,426,035	+		PFLU_RS15290	0.78	+1.4
3,426,078	+		PFLU_RS15290	0.82	+2.1
3,426,079	-		PFLU_RS15290	0.82	-0.8
3,426,129	+		PFLU_RS15290	0.88	-2.6
3,426,129	+		PFLU_RS15290	0.88	-2.0
3,426,129	+		PFLU_RS15290	0.88	-2.7
3,426,129	+		PFLU_RS15290	0.88	-1.1
3,426,129	+		PFLU_RS15290	0.88	+4.4
3,426,129	+		PFLU_RS15290	0.88	-2.1
3,426,130	-		PFLU_RS15290	0.88	-0.6
3,426,131	+		PFLU_RS15290	0.88	+0.1
3,426,132	-		PFLU_RS15290	0.88	+0.4
3,426,167	+				-1.9
3,426,168	-				+3.4
3,426,168	-				+1.0
3,426,217	+				+1.7
3,426,228	+				-1.7
3,426,228	+				-0.2
3,426,228	+				-1.3
3,426,243	+				+2.3
3,426,244	-				+2.1
3,426,244	-				+4.3
3,426,244	-				+1.1
3,426,244	-				+0.8
3,426,263	+				-0.8
3,426,263	+				+3.7
3,426,546	+		PFLU_RS15295	0.32	+1.6
3,426,546	+		PFLU_RS15295	0.32	+0.4
3,426,546	+		PFLU_RS15295	0.32	-1.4
3,426,547	-		PFLU_RS15295	0.32	-1.6
3,426,547	-		PFLU_RS15295	0.32	+0.2
3,426,547	-		PFLU_RS15295	0.32	-1.7
3,426,676	+		PFLU_RS15295	0.46	+2.1
3,426,676	+		PFLU_RS15295	0.46	+1.9
3,426,677	-		PFLU_RS15295	0.46	-1.5
3,426,677	-		PFLU_RS15295	0.46	-2.5
3,426,730	-		PFLU_RS15295	0.52	+3.0
3,426,730	-		PFLU_RS15295	0.52	+1.3
3,426,738	+		PFLU_RS15295	0.53	-2.4
3,426,738	+		PFLU_RS15295	0.53	+1.4
3,426,738	+		PFLU_RS15295	0.53	+0.2
3,426,738	+		PFLU_RS15295	0.53	+1.8
3,426,738	+		PFLU_RS15295	0.53	-2.0
3,426,738	+		PFLU_RS15295	0.53	-1.3
3,426,738	+		PFLU_RS15295	0.53	-1.9
3,426,738	+		PFLU_RS15295	0.53	-1.5
3,426,739	-		PFLU_RS15295	0.53	-0.1
3,426,739	-		PFLU_RS15295	0.53	-2.1
3,426,739	-		PFLU_RS15295	0.53	+1.0
3,426,739	-		PFLU_RS15295	0.53	+1.1
3,426,739	-		PFLU_RS15295	0.53	-3.3
3,426,739	-		PFLU_RS15295	0.53	+1.7
3,426,739	-		PFLU_RS15295	0.53	-2.3
3,426,739	-		PFLU_RS15295	0.53	+3.6
3,426,739	-		PFLU_RS15295	0.53	-1.8
3,426,739	-		PFLU_RS15295	0.53	+1.8
3,426,739	-		PFLU_RS15295	0.53	-0.3
3,426,739	-		PFLU_RS15295	0.53	+4.2
3,426,739	-		PFLU_RS15295	0.53	-1.5
3,426,757	-		PFLU_RS15295	0.55	+1.3
3,426,966	+		PFLU_RS15295	0.77	+1.6
3,427,146	-				+0.4
3,427,146	-				+1.9
3,427,146	-				+2.2
3,427,153	+				+1.9
3,427,154	-				-2.7
3,427,405	+				-2.4
3,427,411	+				-0.6
3,427,411	+				-2.2
3,427,411	+				-0.7
3,427,411	+				+2.0
3,427,411	+				+2.4
3,427,411	+				-0.2
3,427,411	+				+2.5
3,427,411	+				-1.2
3,427,411	+				-0.1
3,427,411	+				-1.2
3,427,411	+				-1.3
3,427,411	+				+2.9
3,427,411	+				+2.1
3,427,411	+				-1.1
3,427,412	-				-2.1
3,427,412	-				+2.9
3,427,412	-				+0.3
3,427,412	-				+1.3
3,427,412	-				+1.4
3,427,412	-				+3.9
3,427,417	+				-0.7
3,427,417	+				-1.3
3,427,417	+				-2.2
3,427,417	+				-0.2
3,427,417	+				+0.7
3,427,417	+				-2.8
3,427,417	+				+1.8
3,427,418	-				+2.4
3,427,418	-				+0.8
3,427,418	-				-0.9
3,427,418	-				-2.3
3,427,423	+				+3.4
3,427,424	-				-1.3
3,427,424	-				-1.0
3,427,424	-				+0.6
3,427,735	+		PFLU_RS15300	0.21	-1.1
3,427,735	+		PFLU_RS15300	0.21	+0.1
3,427,735	+		PFLU_RS15300	0.21	-0.7
3,427,735	+		PFLU_RS15300	0.21	-2.1
3,427,735	+		PFLU_RS15300	0.21	+2.2
3,427,735	+		PFLU_RS15300	0.21	-1.2
3,427,735	+		PFLU_RS15300	0.21	-1.4
3,427,735	+		PFLU_RS15300	0.21	-1.4
3,427,735	+		PFLU_RS15300	0.21	-0.4
3,427,735	+		PFLU_RS15300	0.21	+3.0
3,427,736	-		PFLU_RS15300	0.21	+0.9
3,427,736	-		PFLU_RS15300	0.21	+1.3
3,427,736	-		PFLU_RS15300	0.21	-0.6
3,427,736	-		PFLU_RS15300	0.21	+0.9
3,427,756	+		PFLU_RS15300	0.22	+1.0
3,427,757	-		PFLU_RS15300	0.22	+3.0
3,427,781	+		PFLU_RS15300	0.23	+0.1
3,427,781	+		PFLU_RS15300	0.23	+1.2
3,427,781	+		PFLU_RS15300	0.23	+0.7
3,427,782	-		PFLU_RS15300	0.23	+1.0
3,427,782	-		PFLU_RS15300	0.23	-1.9
3,427,918	+		PFLU_RS15300	0.29	+0.1
3,427,921	+		PFLU_RS15300	0.29	-0.2
3,427,921	+		PFLU_RS15300	0.29	-1.7
3,427,922	-		PFLU_RS15300	0.29	+3.6
3,427,922	-		PFLU_RS15300	0.29	+3.8
3,427,922	-		PFLU_RS15300	0.29	-0.8
3,428,125	+		PFLU_RS15300	0.38	-1.5
3,428,125	+		PFLU_RS15300	0.38	-0.8
3,428,125	+		PFLU_RS15300	0.38	+0.8
3,428,173	+		PFLU_RS15300	0.40	+0.3
3,428,173	+		PFLU_RS15300	0.40	-1.8
3,428,173	+		PFLU_RS15300	0.40	-0.6