Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05910

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
1,321,980	+				+2.0
1,322,117	+		PFLU_RS05905	0.16	+2.3
1,322,117	+		PFLU_RS05905	0.16	+1.4
1,322,118	-		PFLU_RS05905	0.16	+1.6
1,322,118	-		PFLU_RS05905	0.16	+1.3
1,322,118	-		PFLU_RS05905	0.16	-0.7
1,322,118	-		PFLU_RS05905	0.16	-0.6
1,322,318	+		PFLU_RS05905	0.44	-0.2
1,322,318	+		PFLU_RS05905	0.44	+1.0
1,322,318	+		PFLU_RS05905	0.44	-1.4
1,322,318	+		PFLU_RS05905	0.44	-1.3
1,322,318	+		PFLU_RS05905	0.44	-0.7
1,322,318	+		PFLU_RS05905	0.44	+3.7
1,322,318	+		PFLU_RS05905	0.44	+4.0
1,322,318	+		PFLU_RS05905	0.44	+3.5
1,322,318	+		PFLU_RS05905	0.44	+1.9
1,322,318	+		PFLU_RS05905	0.44	-1.6
1,322,318	+		PFLU_RS05905	0.44	+1.1
1,322,318	+		PFLU_RS05905	0.44	+0.7
1,322,318	+		PFLU_RS05905	0.44	-0.1
1,322,318	+		PFLU_RS05905	0.44	-2.1
1,322,318	+		PFLU_RS05905	0.44	+3.5
1,322,318	+		PFLU_RS05905	0.44	+2.9
1,322,318	+		PFLU_RS05905	0.44	+0.8
1,322,318	+		PFLU_RS05905	0.44	-2.4
1,322,318	+		PFLU_RS05905	0.44	-1.2
1,322,318	+		PFLU_RS05905	0.44	+0.3
1,322,318	+		PFLU_RS05905	0.44	-0.1
1,322,318	+		PFLU_RS05905	0.44	+0.5
1,322,318	+		PFLU_RS05905	0.44	-1.1
1,322,318	+		PFLU_RS05905	0.44	+0.9
1,322,318	+		PFLU_RS05905	0.44	+0.1
1,322,318	+		PFLU_RS05905	0.44	+1.1
1,322,318	+		PFLU_RS05905	0.44	-1.7
1,322,318	+		PFLU_RS05905	0.44	-0.4
1,322,318	+		PFLU_RS05905	0.44	+2.6
1,322,318	+		PFLU_RS05905	0.44	-0.1
1,322,318	+		PFLU_RS05905	0.44	+1.0
1,322,319	-		PFLU_RS05905	0.44	-0.4
1,322,319	-		PFLU_RS05905	0.44	-0.4
1,322,319	-		PFLU_RS05905	0.44	-0.3
1,322,319	-		PFLU_RS05905	0.44	-2.2
1,322,319	-		PFLU_RS05905	0.44	-1.1
1,322,319	-		PFLU_RS05905	0.44	-1.6
1,322,319	-		PFLU_RS05905	0.44	-2.4
1,322,319	-		PFLU_RS05905	0.44	+1.0
1,322,319	-		PFLU_RS05905	0.44	-0.5
1,322,319	-		PFLU_RS05905	0.44	-2.2
1,322,319	-		PFLU_RS05905	0.44	+1.0
1,322,319	-		PFLU_RS05905	0.44	+3.4
1,322,319	-		PFLU_RS05905	0.44	+1.5
1,322,319	-		PFLU_RS05905	0.44	+1.5
1,322,319	-		PFLU_RS05905	0.44	+0.5
1,322,319	-		PFLU_RS05905	0.44	+1.4
1,322,319	-		PFLU_RS05905	0.44	+0.7
1,322,319	-		PFLU_RS05905	0.44	+1.3
1,322,319	-		PFLU_RS05905	0.44	+2.1
1,322,319	-		PFLU_RS05905	0.44	-1.1
1,322,319	-		PFLU_RS05905	0.44	+0.9
1,322,319	-		PFLU_RS05905	0.44	+0.7
1,322,320	+		PFLU_RS05905	0.44	+1.0
1,322,320	+		PFLU_RS05905	0.44	-1.3
1,322,320	+		PFLU_RS05905	0.44	+2.1
1,322,321	-		PFLU_RS05905	0.44	+2.1
1,322,321	-		PFLU_RS05905	0.44	+1.3
1,322,456	+		PFLU_RS05905	0.63	+3.8
1,322,457	-		PFLU_RS05905	0.63	-0.7
1,322,469	+		PFLU_RS05905	0.65	-2.3
1,322,470	-		PFLU_RS05905	0.65	+3.0
1,322,470	-		PFLU_RS05905	0.65	+2.4
1,322,470	-		PFLU_RS05905	0.65	+1.2
1,322,508	-		PFLU_RS05905	0.70	+0.9
1,322,604	+		PFLU_RS05905	0.83	+2.1
1,322,605	-		PFLU_RS05905	0.84	+0.2
1,322,605	-		PFLU_RS05905	0.84	+0.6
1,322,605	-		PFLU_RS05905	0.84	-0.9
1,322,605	-		PFLU_RS05905	0.84	+0.0
1,322,605	-		PFLU_RS05905	0.84	+4.2
1,322,615	+		PFLU_RS05905	0.85	+2.0
1,322,616	-		PFLU_RS05905	0.85	+1.7
1,322,639	+		PFLU_RS05905	0.88	+1.2
1,322,639	+		PFLU_RS05905	0.88	+3.2
1,322,639	+		PFLU_RS05905	0.88	-0.6
1,322,640	-		PFLU_RS05905	0.88	+1.4
1,322,640	-		PFLU_RS05905	0.88	+1.4
1,322,640	-		PFLU_RS05905	0.88	-0.4
1,322,640	-		PFLU_RS05905	0.88	-0.8
1,322,661	+				-1.2
1,322,661	+				+1.3
1,322,662	-				-0.2
1,322,662	-				-1.8
1,322,662	-				+1.4
1,322,689	+				-0.3
1,322,689	+				-0.6
1,322,689	+				+1.0
1,322,705	+				+2.6
1,322,705	+				-1.5
1,322,705	+				+1.8
1,322,706	-				-2.6
1,322,706	-				+1.4
1,322,706	-				+2.3
1,322,706	-				+3.6
1,322,706	-				+5.4
1,322,706	-				+1.2
1,322,706	-				-0.8
1,322,709	+				-0.4
1,322,709	+				+2.2
1,322,709	+				+0.6
1,322,709	+				+0.2
1,322,709	+				-0.2
1,322,710	-				+2.3
1,322,710	-				+3.2
1,322,710	-				-1.0
1,322,710	-				-0.1
1,322,710	-				-1.4
1,322,710	-				-2.0
1,322,718	+				-3.1
1,322,718	+				+3.3
1,322,718	+				+0.6
1,322,718	+				+0.6
1,322,718	+				-0.4
1,322,718	+				+1.6
1,322,719	-				+1.1
1,322,720	+				-1.9
1,322,720	+				-1.0
1,322,720	+				-0.9
1,322,721	-				-1.2
1,322,751	-				+2.3
1,322,751	-				+1.4
1,322,784	-				-2.4
1,322,784	-				-0.6
1,322,784	-				+2.1
1,322,803	+				-0.0
1,322,804	-				+1.9
1,322,804	-				-1.5
1,322,804	-				-2.7
1,322,896	+				+0.5
1,322,896	+				+2.0
1,322,920	+				-2.8
1,322,920	+				-0.4
1,322,921	-				-1.9
1,322,921	-				-1.0
1,322,970	+				-1.6
1,322,970	+				-2.5
1,322,970	+				-2.5
1,322,971	-				+2.6
1,322,971	-				-0.9
1,322,971	-				-1.0
1,322,971	-				+3.2
1,322,971	-				-2.1
1,322,971	-				+1.1
1,322,971	-				-1.2
1,322,985	+				-2.0
1,322,985	+				-0.5
1,322,985	+				-2.1
1,322,985	+				-1.8
1,322,986	-				-1.0
1,322,986	-				-2.9
1,322,986	-				-0.6
1,322,986	-				+1.6
1,322,986	-				-2.0
1,322,986	-				+0.2
1,322,986	-				+1.0
1,322,998	+				-0.8
1,323,204	+		PFLU_RS05910	0.35	+0.2
1,323,223	+		PFLU_RS05910	0.38	-2.4
1,323,223	+		PFLU_RS05910	0.38	-0.6
1,323,223	+		PFLU_RS05910	0.38	-1.2
1,323,569	+				-1.6
1,323,569	+				-2.6
1,323,569	+				-2.4
1,323,569	+				-0.9
1,323,569	+				+1.8
1,323,569	+				+0.1
1,323,569	+				-0.9
1,323,569	+				+2.0
1,323,569	+				+0.5
1,323,569	+				-2.3
1,323,570	-				+2.1
1,323,570	-				-2.2
1,323,570	-				-1.1
1,323,570	-				+0.5
1,323,570	-				-0.8
1,323,570	-				-2.0
1,323,570	-				-1.4
1,323,575	+				-0.8
1,323,575	+				-0.5
1,323,576	-				-1.7
1,323,576	-				-1.2
1,323,624	+				-0.6
1,323,624	+				-0.8
1,323,624	+				+1.1
1,323,625	-				+4.7
1,323,625	-				-0.1
1,323,625	-				-0.2
1,323,665	+				-2.8
1,323,665	+				-0.3
1,323,665	+				-0.2
1,323,665	+				-1.5
1,323,665	+				-1.5
1,323,665	+				-1.4
1,323,665	+				-0.7
1,323,666	-				-0.9
1,323,666	-				+3.1
1,323,666	-				+1.4
1,323,666	-				-0.5
1,323,666	-				+0.5
1,323,666	-				-1.6
1,323,666	-				-1.6
1,323,666	-				+0.2
1,323,666	-				-0.8
1,323,666	-				-0.2
1,323,666	-				-0.5
1,323,695	+				+0.4
1,323,695	+				-0.6
1,323,695	+				-2.8
1,323,696	-				+0.5
1,323,696	-				+0.2
1,323,696	-				-1.9
1,323,701	+				+0.7
1,323,701	+				+2.6
1,323,701	+				-0.1
1,323,701	+				-1.3
1,323,701	+				-0.1
1,323,701	+				+1.3
1,323,701	+				+1.6
1,323,701	+				+2.5
1,323,701	+				+0.9
1,323,701	+				-0.4
1,323,701	+				+1.3
1,323,701	+				+1.9
1,323,701	+				-1.6
1,323,701	+				+2.2
1,323,701	+				+1.4
1,323,701	+				-0.4
1,323,701	+				+4.0
1,323,701	+				-1.0
1,323,701	+				+2.9
1,323,701	+				-2.4
1,323,701	+				-2.5
1,323,701	+				-1.9
1,323,701	+				-0.4
1,323,701	+				+3.6
1,323,701	+				-0.9
1,323,701	+				+1.6
1,323,701	+				-0.4
1,323,701	+				-0.4
1,323,702	-				-0.1
1,323,702	-				+2.3
1,323,702	-				-1.1
1,323,702	-				+0.3
1,323,702	-				+0.6
1,323,702	-				+1.2
1,323,702	-				-1.3
1,323,702	-				+0.4
1,323,702	-				+0.4
1,323,702	-				+1.1
1,323,702	-				-1.0
1,323,702	-				-2.4
1,323,702	-				+0.1
1,323,702	-				+0.5
1,323,702	-				+3.2
1,323,702	-				+1.5
1,323,702	-				+1.7
1,323,702	-				-1.5
1,323,702	-				+1.5
1,323,702	-				+0.1
1,323,702	-				+2.4
1,323,702	-				-0.9
1,323,702	-				-0.8
1,323,702	-				+0.8
1,323,702	-				-0.1
1,323,702	-				-1.1
1,323,702	-				-1.0
1,323,702	-				-1.6
1,323,702	-				-0.7
1,323,702	-				+1.8
1,323,702	-				+2.7
1,323,702	-				+1.0
1,323,702	-				+2.9
1,323,737	+				-0.5
1,323,923	+		PFLU_RS05915	0.61	+0.1
1,323,923	+		PFLU_RS05915	0.61	-0.6
1,323,923	+		PFLU_RS05915	0.61	+0.8
1,323,924	-		PFLU_RS05915	0.61	+0.6
1,323,924	-		PFLU_RS05915	0.61	+1.3
1,323,924	-		PFLU_RS05915	0.61	+0.8
1,323,924	-		PFLU_RS05915	0.61	+1.0
1,323,924	-		PFLU_RS05915	0.61	-1.6
1,324,034	+				-1.6
1,324,034	+				-0.3
1,324,034	+				+1.1
1,324,034	+				+1.5
1,324,034	+				+0.9
1,324,034	+				-0.7
1,324,034	+				-1.3
1,324,034	+				+0.6
1,324,034	+				-2.0
1,324,034	+				-1.7
1,324,035	-				-0.7
1,324,035	-				-0.4
1,324,035	-				+0.6
1,324,035	-				+1.1
1,324,035	-				+4.0
1,324,035	-				-1.9
1,324,035	-				+1.0
1,324,035	-				+1.5
1,324,035	-				-2.2
1,324,035	-				-2.0
1,324,035	-				+2.1
1,324,165	+				+1.3
1,324,165	+				-1.7
1,324,165	+				-1.4
1,324,166	-				+2.2
1,324,189	+		PFLU_RS05920	0.12	-2.2
1,324,189	+		PFLU_RS05920	0.12	+2.9
1,324,189	+		PFLU_RS05920	0.12	+1.1
1,324,189	+		PFLU_RS05920	0.12	+1.8
1,324,189	+		PFLU_RS05920	0.12	-0.6
1,324,189	+		PFLU_RS05920	0.12	-2.2
1,324,190	-		PFLU_RS05920	0.12	-2.3
1,324,190	-		PFLU_RS05920	0.12	+2.2
1,324,190	-		PFLU_RS05920	0.12	-2.3
1,324,190	-		PFLU_RS05920	0.12	+2.6
1,324,190	-		PFLU_RS05920	0.12	+0.4
1,324,346	+		PFLU_RS05920	0.28	+0.2
1,324,346	+		PFLU_RS05920	0.28	-1.0
1,324,347	-		PFLU_RS05920	0.28	+0.3
1,324,347	-		PFLU_RS05920	0.28	-0.3
1,324,347	-		PFLU_RS05920	0.28	+2.1
1,324,347	-		PFLU_RS05920	0.28	-1.9
1,324,347	-		PFLU_RS05920	0.28	+3.3
1,324,560	+		PFLU_RS05920	0.50	-1.7
1,324,560	+		PFLU_RS05920	0.50	+0.5
1,324,561	-		PFLU_RS05920	0.50	+3.3
1,324,580	-		PFLU_RS05920	0.52	-2.0
1,324,580	-		PFLU_RS05920	0.52	-1.9
1,324,602	-		PFLU_RS05920	0.54	+0.2
1,324,602	-		PFLU_RS05920	0.54	-0.5
1,324,602	-		PFLU_RS05920	0.54	+0.3