Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS00535

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
109,087	+				-0.6
109,443	+		PFLU_RS00530	0.89	-1.3
109,443	+		PFLU_RS00530	0.89	+2.2
109,443	+		PFLU_RS00530	0.89	+0.9
109,492	+				+0.5
109,492	+				+0.5
109,492	+				-1.6
109,492	+				-0.3
109,492	+				+3.3
109,492	+				+2.9
109,492	+				+3.1
109,492	+				+3.3
109,492	+				-1.1
109,492	+				-0.4
109,492	+				-1.1
109,492	+				-0.7
109,493	-				+0.1
109,493	-				-1.5
109,493	-				-0.8
109,493	-				+0.6
109,493	-				-1.3
109,493	-				+1.2
109,493	-				+2.2
109,493	-				+2.0
109,493	-				-1.4
109,493	-				+0.4
109,504	+				+1.5
109,543	+				+2.4
109,543	+				+1.2
109,543	+				+1.6
109,543	+				-0.9
109,543	+				+0.3
109,543	+				-1.9
109,543	+				-0.0
109,543	+				+1.1
109,543	+				+3.4
109,543	+				+0.2
109,544	-				+3.8
109,544	-				+1.9
109,544	-				+1.4
109,544	-				-1.3
109,544	-				-1.5
109,544	-				-1.4
109,573	+				+1.0
109,574	-				+0.0
109,576	+				+0.1
109,576	+				+0.2
109,577	-				+0.1
109,577	-				-1.5
109,577	-				+2.3
109,616	+				-0.6
109,616	+				+0.2
109,616	+				-1.2
109,616	+				+1.3
109,617	-				-0.4
109,617	-				-0.2
109,722	-		PFLU_RS30320	0.58	-2.2
109,722	-		PFLU_RS30320	0.58	-0.2
109,722	-		PFLU_RS30320	0.58	+1.6
109,722	-		PFLU_RS30320	0.58	-0.3
109,722	-		PFLU_RS30320	0.58	-2.8
109,740	+		PFLU_RS30320	0.67	+0.1
109,740	+		PFLU_RS30320	0.67	+0.1
109,740	+		PFLU_RS30320	0.67	+1.1
109,740	+		PFLU_RS30320	0.67	+2.6
109,740	+		PFLU_RS30320	0.67	+0.4
109,741	-		PFLU_RS30320	0.68	-0.5
109,741	-		PFLU_RS30320	0.68	+0.6
109,741	-		PFLU_RS30320	0.68	+0.6
109,741	-		PFLU_RS30320	0.68	-0.5
109,776	+		PFLU_RS30320	0.87	+2.3
109,776	+		PFLU_RS30320	0.87	+0.6
109,776	+		PFLU_RS30320	0.87	-0.7
109,776	+		PFLU_RS30320	0.87	+1.3
109,776	+		PFLU_RS30320	0.87	-2.7
109,776	+		PFLU_RS30320	0.87	+3.8
109,776	+		PFLU_RS30320	0.87	-2.3
109,777	-		PFLU_RS30320	0.87	+2.1
109,777	-		PFLU_RS30320	0.87	-0.5
109,778	+		PFLU_RS30320	0.88	+0.1
109,778	+		PFLU_RS30320	0.88	-2.5
109,778	+		PFLU_RS30320	0.88	+0.5
109,778	+		PFLU_RS30320	0.88	+2.7
109,778	+		PFLU_RS30320	0.88	-1.9
109,778	+		PFLU_RS30320	0.88	+0.8
109,778	+		PFLU_RS30320	0.88	-1.0
109,778	+		PFLU_RS30320	0.88	+0.7
109,779	-		PFLU_RS30320	0.88	+0.6
109,779	-		PFLU_RS30320	0.88	-0.5
109,779	-		PFLU_RS30320	0.88	+1.3
109,779	-		PFLU_RS30320	0.88	+0.1
109,779	-		PFLU_RS30320	0.88	+0.7
109,779	-		PFLU_RS30320	0.88	+1.9
109,779	-		PFLU_RS30320	0.88	-0.8
109,779	-		PFLU_RS30320	0.88	-0.4
109,779	-		PFLU_RS30320	0.88	+1.5
109,794	+				-0.6
109,795	-				-2.0
109,795	-				-1.1
109,807	+				-1.4
109,807	+				-2.0
109,864	+				+2.7
109,865	-				+1.4
109,865	-				+2.2
109,882	+				-1.2
109,883	-				-1.2
109,904	-				+0.2
109,904	-				+0.5
109,907	-				+0.2
109,912	+				-0.2
109,941	+				+0.2
109,942	-				+0.3
110,061	-				+0.1
110,095	+		PFLU_RS00535	0.14	-0.5
110,095	+		PFLU_RS00535	0.14	+1.3
110,095	+		PFLU_RS00535	0.14	-1.3
110,233	-		PFLU_RS00535	0.78	+1.5
110,233	-		PFLU_RS00535	0.78	-1.6
110,233	-		PFLU_RS00535	0.78	-1.5
110,270	+				+2.8
110,270	+				-0.7
110,270	+				-0.1
110,270	+				+0.8
110,270	+				+2.0
110,271	-				+0.6
110,271	-				-2.0
110,271	-				-0.8
110,271	-				-1.0
110,271	-				+2.4
110,271	-				-1.0
110,271	-				+1.4
110,308	+				-0.9
110,308	+				+2.3
110,308	+				+2.1
110,308	+				-0.7
110,312	+				-0.4
110,312	+				-1.3
110,313	-				-1.2
110,313	-				+0.4
110,313	-				-0.9
110,313	-				-1.9
110,313	-				-0.4
110,321	-				-2.9
110,321	-				-1.2
110,360	-				+1.7
110,360	-				+2.2
110,360	-				+0.4
110,363	+				-1.3
110,363	+				+1.2
110,364	-				+3.0
110,393	+				-0.7
110,403	+				-0.1
110,437	-				-2.3
110,450	+				-2.2
110,450	+				+2.4
110,451	-				-2.7
110,451	-				-2.7
110,451	-				+0.8
110,451	-				-1.8
110,454	+				+1.0
110,454	+				+0.8
110,455	-				-0.2
110,491	+				+2.3
110,492	-				-1.2
110,570	+				-0.9
110,570	+				+0.0
110,570	+				+1.6
110,570	+				-0.5
110,570	+				-0.7
110,570	+				-1.9
110,570	+				+1.3
110,571	-				+1.5
110,571	-				-0.8
110,571	-				+2.3
110,571	-				+2.3
110,571	-				+0.0
110,571	-				-1.0
110,592	+				-0.7
110,592	+				+3.0
110,592	+				+1.9
110,592	+				-2.1
110,593	-				+3.1
110,593	-				+1.8
110,633	+				-2.2
110,633	+				-1.5
110,634	-				+0.1
110,634	-				-0.9
110,672	+				-0.2
110,672	+				+0.6
110,673	-				-1.8
110,704	+				+3.1
110,704	+				+0.6
110,704	+				-0.3
110,704	+				+0.4
110,704	+				+1.9
110,704	+				-0.4
110,705	-				-1.5
110,705	-				+1.2
110,705	-				-0.3
110,705	-				+0.6
110,705	-				-1.8
110,705	-				-2.3
110,725	+				-1.5
110,736	+				-1.8
110,736	+				-2.4
110,736	+				+0.3
110,736	+				-1.0
110,736	+				+0.3
110,736	+				+5.0
110,736	+				+1.8
110,736	+				+0.6
110,736	+				-0.8
110,736	+				-0.9
110,736	+				-2.1
110,737	-				+0.3
110,737	-				-0.5
110,737	-				-1.1
110,737	-				+0.3
110,737	-				+1.8
110,737	-				+0.0
110,737	-				-0.7
110,865	+		PFLU_RS00540	0.18	-0.7
110,865	+		PFLU_RS00540	0.18	+0.6
110,865	+		PFLU_RS00540	0.18	-0.7
110,865	+		PFLU_RS00540	0.18	+1.0
110,865	+		PFLU_RS00540	0.18	-0.5
110,865	+		PFLU_RS00540	0.18	-1.8
110,865	+		PFLU_RS00540	0.18	-0.1
110,865	+		PFLU_RS00540	0.18	-1.9
110,866	-		PFLU_RS00540	0.18	-0.8
110,866	-		PFLU_RS00540	0.18	+0.2
111,004	+		PFLU_RS00540	0.27	+2.6
111,004	+		PFLU_RS00540	0.27	-0.7
111,004	+		PFLU_RS00540	0.27	-0.2
111,004	+		PFLU_RS00540	0.27	+0.7
111,005	-		PFLU_RS00540	0.27	-1.8
111,005	-		PFLU_RS00540	0.27	-2.1
111,005	-		PFLU_RS00540	0.27	-0.9
111,005	-		PFLU_RS00540	0.27	-1.1
111,005	-		PFLU_RS00540	0.27	+0.0
111,005	-		PFLU_RS00540	0.27	+0.1
111,093	+		PFLU_RS00540	0.33	-1.7
111,093	+		PFLU_RS00540	0.33	+0.1
111,094	-		PFLU_RS00540	0.33	-1.1
111,094	-		PFLU_RS00540	0.33	-1.2
111,094	-		PFLU_RS00540	0.33	-0.9
111,094	-		PFLU_RS00540	0.33	-2.6
111,109	+		PFLU_RS00540	0.34	-0.8
111,109	+		PFLU_RS00540	0.34	+0.5
111,109	+		PFLU_RS00540	0.34	+1.7
111,109	+		PFLU_RS00540	0.34	-0.5
111,109	+		PFLU_RS00540	0.34	+1.8
111,110	-		PFLU_RS00540	0.34	-3.0
111,110	-		PFLU_RS00540	0.34	-0.9
111,110	-		PFLU_RS00540	0.34	+0.1
111,110	-		PFLU_RS00540	0.34	-0.5
111,235	+		PFLU_RS00540	0.43	+2.0
111,235	+		PFLU_RS00540	0.43	-0.3
111,235	+		PFLU_RS00540	0.43	-1.8
111,235	+		PFLU_RS00540	0.43	-0.9
111,235	+		PFLU_RS00540	0.43	+0.0
111,235	+		PFLU_RS00540	0.43	-1.3
111,235	+		PFLU_RS00540	0.43	+2.1
111,236	-		PFLU_RS00540	0.43	-0.9
111,236	-		PFLU_RS00540	0.43	+0.8
111,236	-		PFLU_RS00540	0.43	-1.6
111,236	-		PFLU_RS00540	0.43	+3.7
111,236	-		PFLU_RS00540	0.43	+0.1
111,236	-		PFLU_RS00540	0.43	-1.6
111,236	-		PFLU_RS00540	0.43	-0.4
111,236	-		PFLU_RS00540	0.43	-0.9
111,236	-		PFLU_RS00540	0.43	-1.1
111,236	-		PFLU_RS00540	0.43	-0.5
111,236	-		PFLU_RS00540	0.43	-0.9
111,236	-		PFLU_RS00540	0.43	-1.4
111,236	-		PFLU_RS00540	0.43	-1.9